RNA-Binding Protein Musashi1 Is a Central Regulator of Adhesion Pathways in Glioblastoma
The conserved RNA-binding protein Musashi1 (MSI1) has emerged as a key oncogenic factor in numerous solid tumors, including glioblastoma. However, its mechanism of action has not yet been established comprehensively. To identify its target genes comprehensively and determine the main routes by which...
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creator | Uren, Philip J. Vo, Dat T. de Araujo, Patricia Rosa Pötschke, Rebecca Burns, Suzanne C. Bahrami-Samani, Emad Qiao, Mei de Sousa Abreu, Raquel Nakaya, Helder I. Correa, Bruna R. Kühnöl, Caspar Ule, Jernej Martindale, Jennifer L. Abdelmohsen, Kotb Gorospe, Myriam Smith, Andrew D. Penalva, Luiz O. F. |
description | The conserved RNA-binding protein Musashi1 (MSI1) has emerged as a key oncogenic factor in numerous solid tumors, including glioblastoma. However, its mechanism of action has not yet been established comprehensively. To identify its target genes comprehensively and determine the main routes by which it influences glioblastoma phenotypes, we conducted individual-nucleotide resolution cross-linking and immunoprecipitation (iCLIP) experiments. We confirmed that MSI1 has a preference for UAG sequences contained in a particular structural context, especially in 3′ untranslated regions. Although numerous binding sites were also identified in intronic sequences, our RNA transcriptome sequencing analysis does not favor the idea that MSI1 is a major regulator of splicing in glioblastoma cells. MSI1 target mRNAs encode proteins that function in multiple pathways of cell proliferation and cell adhesion. Since these associations indicate potentially new roles for MSI1, we investigated its impact on glioblastoma cell adhesion, morphology, migration, and invasion. These processes are known to underpin the spread and relapse of glioblastoma, in contrast to other tumors where metastasis is the main driver of recurrence and progression. |
doi_str_mv | 10.1128/MCB.00410-15 |
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F.</creator><creatorcontrib>Uren, Philip J. ; Vo, Dat T. ; de Araujo, Patricia Rosa ; Pötschke, Rebecca ; Burns, Suzanne C. ; Bahrami-Samani, Emad ; Qiao, Mei ; de Sousa Abreu, Raquel ; Nakaya, Helder I. ; Correa, Bruna R. ; Kühnöl, Caspar ; Ule, Jernej ; Martindale, Jennifer L. ; Abdelmohsen, Kotb ; Gorospe, Myriam ; Smith, Andrew D. ; Penalva, Luiz O. F.</creatorcontrib><description>The conserved RNA-binding protein Musashi1 (MSI1) has emerged as a key oncogenic factor in numerous solid tumors, including glioblastoma. However, its mechanism of action has not yet been established comprehensively. To identify its target genes comprehensively and determine the main routes by which it influences glioblastoma phenotypes, we conducted individual-nucleotide resolution cross-linking and immunoprecipitation (iCLIP) experiments. We confirmed that MSI1 has a preference for UAG sequences contained in a particular structural context, especially in 3′ untranslated regions. Although numerous binding sites were also identified in intronic sequences, our RNA transcriptome sequencing analysis does not favor the idea that MSI1 is a major regulator of splicing in glioblastoma cells. MSI1 target mRNAs encode proteins that function in multiple pathways of cell proliferation and cell adhesion. Since these associations indicate potentially new roles for MSI1, we investigated its impact on glioblastoma cell adhesion, morphology, migration, and invasion. These processes are known to underpin the spread and relapse of glioblastoma, in contrast to other tumors where metastasis is the main driver of recurrence and progression.</description><identifier>ISSN: 1098-5549</identifier><identifier>ISSN: 0270-7306</identifier><identifier>EISSN: 1098-5549</identifier><identifier>DOI: 10.1128/MCB.00410-15</identifier><identifier>PMID: 26100017</identifier><language>eng</language><publisher>United States: Taylor & Francis</publisher><subject>3' Untranslated Regions - genetics ; Alternative Splicing - genetics ; Base Sequence ; Binding Sites - genetics ; Cell Adhesion - genetics ; Cell Line, Tumor ; Cell Movement - genetics ; Cell Proliferation - genetics ; Cell Survival - genetics ; Glioblastoma - genetics ; Glioblastoma - pathology ; Humans ; Neoplasm Invasiveness - genetics ; Neoplasm Invasiveness - pathology ; Nerve Tissue Proteins - biosynthesis ; Nerve Tissue Proteins - genetics ; RNA Interference ; RNA, Small Interfering ; RNA-Binding Proteins - biosynthesis ; RNA-Binding Proteins - genetics ; Sequence Analysis, RNA</subject><ispartof>Molecular and cellular biology, 2015-09, Vol.35 (17), p.2965-2978</ispartof><rights>Copyright © 2015, American Society for Microbiology 2015</rights><rights>Copyright © 2015, American Society for Microbiology. All Rights Reserved.</rights><rights>Copyright © 2015, American Society for Microbiology. 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F.</creatorcontrib><title>RNA-Binding Protein Musashi1 Is a Central Regulator of Adhesion Pathways in Glioblastoma</title><title>Molecular and cellular biology</title><addtitle>Mol Cell Biol</addtitle><description>The conserved RNA-binding protein Musashi1 (MSI1) has emerged as a key oncogenic factor in numerous solid tumors, including glioblastoma. However, its mechanism of action has not yet been established comprehensively. To identify its target genes comprehensively and determine the main routes by which it influences glioblastoma phenotypes, we conducted individual-nucleotide resolution cross-linking and immunoprecipitation (iCLIP) experiments. We confirmed that MSI1 has a preference for UAG sequences contained in a particular structural context, especially in 3′ untranslated regions. Although numerous binding sites were also identified in intronic sequences, our RNA transcriptome sequencing analysis does not favor the idea that MSI1 is a major regulator of splicing in glioblastoma cells. MSI1 target mRNAs encode proteins that function in multiple pathways of cell proliferation and cell adhesion. Since these associations indicate potentially new roles for MSI1, we investigated its impact on glioblastoma cell adhesion, morphology, migration, and invasion. These processes are known to underpin the spread and relapse of glioblastoma, in contrast to other tumors where metastasis is the main driver of recurrence and progression.</description><subject>3' Untranslated Regions - genetics</subject><subject>Alternative Splicing - genetics</subject><subject>Base Sequence</subject><subject>Binding Sites - genetics</subject><subject>Cell Adhesion - genetics</subject><subject>Cell Line, Tumor</subject><subject>Cell Movement - genetics</subject><subject>Cell Proliferation - genetics</subject><subject>Cell Survival - genetics</subject><subject>Glioblastoma - genetics</subject><subject>Glioblastoma - pathology</subject><subject>Humans</subject><subject>Neoplasm Invasiveness - genetics</subject><subject>Neoplasm Invasiveness - pathology</subject><subject>Nerve Tissue Proteins - biosynthesis</subject><subject>Nerve Tissue Proteins - genetics</subject><subject>RNA Interference</subject><subject>RNA, Small Interfering</subject><subject>RNA-Binding Proteins - biosynthesis</subject><subject>RNA-Binding Proteins - genetics</subject><subject>Sequence Analysis, RNA</subject><issn>1098-5549</issn><issn>0270-7306</issn><issn>1098-5549</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNptkU1PHDEMhiPUCij0xhnl2AMD-ZzJXCotK6BIUBBqpd4ib5LZTZVJIJkB7b_v0AVEpZ5sy49fW34ROqDkmFKmTq7np8eECEoqKrfQLiWtqqQU7Yd3-Q76VMpvQkjdEr6NdlhNp4I2u-jX3fdZdeqj9XGJb3ManI_4eixQVp7iy4IBz10cMgR855ZjgCFlnDo8sytXfIr4FobVE6wLnuYugk-LAGVIPeyjjx2E4j6_xD308_zsx_xbdXVzcTmfXVVGcDZUreKNYI5RIiUoYUxdK2NALBpuTdNQKWjbKgnGOmOtItJ01rAJYAooB8730NeN7v246J01m2P1ffY95LVO4PW_nehXepketZBMckYngS8vAjk9jK4MuvfFuBAgujQWTRvCiKqFekaPNqjJqZTsurc1lOhnM_Rkhv5rhqZywg_fn_YGv35_ApoN4GOXcg9PKQerB1iHlLsM0fii-X-l_wAA5pdp</recordid><startdate>20150901</startdate><enddate>20150901</enddate><creator>Uren, Philip J.</creator><creator>Vo, Dat T.</creator><creator>de Araujo, Patricia Rosa</creator><creator>Pötschke, Rebecca</creator><creator>Burns, Suzanne C.</creator><creator>Bahrami-Samani, Emad</creator><creator>Qiao, Mei</creator><creator>de Sousa Abreu, Raquel</creator><creator>Nakaya, Helder I.</creator><creator>Correa, Bruna R.</creator><creator>Kühnöl, Caspar</creator><creator>Ule, Jernej</creator><creator>Martindale, Jennifer L.</creator><creator>Abdelmohsen, Kotb</creator><creator>Gorospe, Myriam</creator><creator>Smith, Andrew D.</creator><creator>Penalva, Luiz O. 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F.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>RNA-Binding Protein Musashi1 Is a Central Regulator of Adhesion Pathways in Glioblastoma</atitle><jtitle>Molecular and cellular biology</jtitle><addtitle>Mol Cell Biol</addtitle><date>2015-09-01</date><risdate>2015</risdate><volume>35</volume><issue>17</issue><spage>2965</spage><epage>2978</epage><pages>2965-2978</pages><issn>1098-5549</issn><issn>0270-7306</issn><eissn>1098-5549</eissn><abstract>The conserved RNA-binding protein Musashi1 (MSI1) has emerged as a key oncogenic factor in numerous solid tumors, including glioblastoma. However, its mechanism of action has not yet been established comprehensively. To identify its target genes comprehensively and determine the main routes by which it influences glioblastoma phenotypes, we conducted individual-nucleotide resolution cross-linking and immunoprecipitation (iCLIP) experiments. 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subjects | 3' Untranslated Regions - genetics Alternative Splicing - genetics Base Sequence Binding Sites - genetics Cell Adhesion - genetics Cell Line, Tumor Cell Movement - genetics Cell Proliferation - genetics Cell Survival - genetics Glioblastoma - genetics Glioblastoma - pathology Humans Neoplasm Invasiveness - genetics Neoplasm Invasiveness - pathology Nerve Tissue Proteins - biosynthesis Nerve Tissue Proteins - genetics RNA Interference RNA, Small Interfering RNA-Binding Proteins - biosynthesis RNA-Binding Proteins - genetics Sequence Analysis, RNA |
title | RNA-Binding Protein Musashi1 Is a Central Regulator of Adhesion Pathways in Glioblastoma |
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