A fully automatic 2D segmentation method for uterine fibroid in MRgFUS treatment evaluation
Abstract Purpose Magnetic Resonance guided Focused UltraSound (MRgFUS) represents a non-invasive surgical approach that uses thermal ablation to treat uterine fibroids. After the MRgFUS treatment, an operator must manually segment the treated fibroid areas to evaluate the NonPerfused Volume (NPV). T...
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description | Abstract Purpose Magnetic Resonance guided Focused UltraSound (MRgFUS) represents a non-invasive surgical approach that uses thermal ablation to treat uterine fibroids. After the MRgFUS treatment, an operator must manually segment the treated fibroid areas to evaluate the NonPerfused Volume (NPV). This manual approach is operator-dependent, introducing issues of result reproducibility, which could lead to errors in the subsequent follow-up phase. Moreover, manual segmentation is time-consuming, and can have a negative impact on the optimization of both machine-time and operator-time. Method To address these issues, in this paper a novel fully automatic method based on the unsupervised Fuzzy C-Means clustering and iterative optimal threshold selection algorithms for uterus and fibroid segmentation is proposed. The developed method could be used to enhance the current manual methodology performed by healthcare operators for post-operative NPV evaluation in uterine fibroid MRgFUS treatments. Results The proposed method was tested on 15 MR datasets of 15 different patients with uterine fibroids and evaluated using area-based and distance-based metrics. A comparison of extracted volume was also performed. Average values for fibroid (ROT) segmentation are SDI=88.67%, JI=80.70%, SE=89.79%, SP=88.73%, MAD=2.200 [pixels], MAXD=6.233 [pixels] and HD=2.988 [pixels]. Moreover, to make a quantitative evaluation of this method, our experimental results were compared with similar literature approaches. Conclusions The proposed method provides a practical approach for the automatic evaluation of the boundary and volume of ablated fibroid regions, without any external user input. The achieved segmentation results show the validity and the effectiveness of the proposed solution. |
doi_str_mv | 10.1016/j.compbiomed.2015.04.030 |
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After the MRgFUS treatment, an operator must manually segment the treated fibroid areas to evaluate the NonPerfused Volume (NPV). This manual approach is operator-dependent, introducing issues of result reproducibility, which could lead to errors in the subsequent follow-up phase. Moreover, manual segmentation is time-consuming, and can have a negative impact on the optimization of both machine-time and operator-time. Method To address these issues, in this paper a novel fully automatic method based on the unsupervised Fuzzy C-Means clustering and iterative optimal threshold selection algorithms for uterus and fibroid segmentation is proposed. The developed method could be used to enhance the current manual methodology performed by healthcare operators for post-operative NPV evaluation in uterine fibroid MRgFUS treatments. Results The proposed method was tested on 15 MR datasets of 15 different patients with uterine fibroids and evaluated using area-based and distance-based metrics. A comparison of extracted volume was also performed. Average values for fibroid (ROT) segmentation are SDI=88.67%, JI=80.70%, SE=89.79%, SP=88.73%, MAD=2.200 [pixels], MAXD=6.233 [pixels] and HD=2.988 [pixels]. Moreover, to make a quantitative evaluation of this method, our experimental results were compared with similar literature approaches. Conclusions The proposed method provides a practical approach for the automatic evaluation of the boundary and volume of ablated fibroid regions, without any external user input. The achieved segmentation results show the validity and the effectiveness of the proposed solution.</description><identifier>ISSN: 0010-4825</identifier><identifier>EISSN: 1879-0534</identifier><identifier>DOI: 10.1016/j.compbiomed.2015.04.030</identifier><identifier>PMID: 25966922</identifier><identifier>CODEN: CBMDAW</identifier><language>eng</language><publisher>United States: Elsevier Ltd</publisher><subject>Adaptive thresholding ; Algorithms ; Automatic segmentation ; Automation ; Databases, Factual ; Datasets ; Female ; Fibroids ; Fuzzy C-Means clustering ; Humans ; Hysterectomy ; Image Processing, Computer-Assisted - methods ; Internal Medicine ; Leiomyoma - diagnostic imaging ; Leiomyoma - therapy ; Magnetic Resonance Imaging ; Methods ; Morphology ; MRgFUS treatment ; Nuclear polyhedrosis virus ; Other ; Radiography ; Standard deviation ; Ultrasonography, Interventional ; Uterine fibroids ; Women</subject><ispartof>Computers in biology and medicine, 2015-07, Vol.62, p.277-292</ispartof><rights>Elsevier Ltd</rights><rights>2015 Elsevier Ltd</rights><rights>Copyright © 2015 Elsevier Ltd. All rights reserved.</rights><rights>Copyright Elsevier Limited Jul 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c556t-29dc62f3b835a2384ec5ad0f96b67e21ad3a6a685c1797510c04f09657d188373</citedby><cites>FETCH-LOGICAL-c556t-29dc62f3b835a2384ec5ad0f96b67e21ad3a6a685c1797510c04f09657d188373</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0010482515001481$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27903,27904,65309</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25966922$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Militello, Carmelo</creatorcontrib><creatorcontrib>Vitabile, Salvatore</creatorcontrib><creatorcontrib>Rundo, Leonardo</creatorcontrib><creatorcontrib>Russo, Giorgio</creatorcontrib><creatorcontrib>Midiri, Massimo</creatorcontrib><creatorcontrib>Gilardi, Maria Carla</creatorcontrib><title>A fully automatic 2D segmentation method for uterine fibroid in MRgFUS treatment evaluation</title><title>Computers in biology and medicine</title><addtitle>Comput Biol Med</addtitle><description>Abstract Purpose Magnetic Resonance guided Focused UltraSound (MRgFUS) represents a non-invasive surgical approach that uses thermal ablation to treat uterine fibroids. After the MRgFUS treatment, an operator must manually segment the treated fibroid areas to evaluate the NonPerfused Volume (NPV). This manual approach is operator-dependent, introducing issues of result reproducibility, which could lead to errors in the subsequent follow-up phase. Moreover, manual segmentation is time-consuming, and can have a negative impact on the optimization of both machine-time and operator-time. Method To address these issues, in this paper a novel fully automatic method based on the unsupervised Fuzzy C-Means clustering and iterative optimal threshold selection algorithms for uterus and fibroid segmentation is proposed. The developed method could be used to enhance the current manual methodology performed by healthcare operators for post-operative NPV evaluation in uterine fibroid MRgFUS treatments. Results The proposed method was tested on 15 MR datasets of 15 different patients with uterine fibroids and evaluated using area-based and distance-based metrics. A comparison of extracted volume was also performed. Average values for fibroid (ROT) segmentation are SDI=88.67%, JI=80.70%, SE=89.79%, SP=88.73%, MAD=2.200 [pixels], MAXD=6.233 [pixels] and HD=2.988 [pixels]. Moreover, to make a quantitative evaluation of this method, our experimental results were compared with similar literature approaches. Conclusions The proposed method provides a practical approach for the automatic evaluation of the boundary and volume of ablated fibroid regions, without any external user input. The achieved segmentation results show the validity and the effectiveness of the proposed solution.</description><subject>Adaptive thresholding</subject><subject>Algorithms</subject><subject>Automatic segmentation</subject><subject>Automation</subject><subject>Databases, Factual</subject><subject>Datasets</subject><subject>Female</subject><subject>Fibroids</subject><subject>Fuzzy C-Means clustering</subject><subject>Humans</subject><subject>Hysterectomy</subject><subject>Image Processing, Computer-Assisted - methods</subject><subject>Internal Medicine</subject><subject>Leiomyoma - diagnostic imaging</subject><subject>Leiomyoma - therapy</subject><subject>Magnetic Resonance Imaging</subject><subject>Methods</subject><subject>Morphology</subject><subject>MRgFUS treatment</subject><subject>Nuclear polyhedrosis virus</subject><subject>Other</subject><subject>Radiography</subject><subject>Standard deviation</subject><subject>Ultrasonography, Interventional</subject><subject>Uterine fibroids</subject><subject>Women</subject><issn>0010-4825</issn><issn>1879-0534</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqNksFu1DAQhi0EotvCKyBLXLgkjO3YcS5IpdCCVIRE6YmD5TiT4iWJFzuptG-Pw7aq1AucPJa_f8Yz_xBCGZQMmHq7LV0Yd60PI3YlByZLqEoQ8IRsmK6bAqSonpINAIOi0lwekeOUtgBQZeg5OeKyUarhfEN-nNJ-GYY9tcscRjt7R_kHmvBmxGnO1zDREeefoaN9iHSZMfoJae_bGHxH_US_fLs5v76ic0Q7rxqKt3ZY_ipfkGe9HRK-vDtPyPX5x-9nn4rLrxefz04vCyelmgvedE7xXrRaSMuFrtBJ20HfqFbVyJnthFVWaelY3dSSgYOqh0bJumNai1qckDeHvLsYfi-YZjP65HAY7IRhSYbVwKpGV6D_jSqtAZTgPKOvH6HbsMQpN7JS-Ts1CJEpfaBcDClF7M0u-tHGvWFgVq_M1jx4ZVavDFQm25Clr-4KLO36di-8NycD7w8A5uHdeowmOY-Tw85HdLPpgv-fKu8eJXGDn7yzwy_cY3roySRuwFytO7OuDJM5qjQTfwBOvr0n</recordid><startdate>20150701</startdate><enddate>20150701</enddate><creator>Militello, Carmelo</creator><creator>Vitabile, Salvatore</creator><creator>Rundo, Leonardo</creator><creator>Russo, Giorgio</creator><creator>Midiri, Massimo</creator><creator>Gilardi, Maria Carla</creator><general>Elsevier Ltd</general><general>Elsevier Limited</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7RV</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AL</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>JQ2</scope><scope>K7-</scope><scope>K9.</scope><scope>KB0</scope><scope>LK8</scope><scope>M0N</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7P</scope><scope>M7Z</scope><scope>MBDVC</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>7QO</scope></search><sort><creationdate>20150701</creationdate><title>A fully automatic 2D segmentation method for uterine fibroid in MRgFUS treatment evaluation</title><author>Militello, Carmelo ; Vitabile, Salvatore ; Rundo, Leonardo ; Russo, Giorgio ; Midiri, Massimo ; Gilardi, Maria Carla</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c556t-29dc62f3b835a2384ec5ad0f96b67e21ad3a6a685c1797510c04f09657d188373</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Adaptive thresholding</topic><topic>Algorithms</topic><topic>Automatic segmentation</topic><topic>Automation</topic><topic>Databases, Factual</topic><topic>Datasets</topic><topic>Female</topic><topic>Fibroids</topic><topic>Fuzzy C-Means clustering</topic><topic>Humans</topic><topic>Hysterectomy</topic><topic>Image Processing, Computer-Assisted - methods</topic><topic>Internal Medicine</topic><topic>Leiomyoma - diagnostic imaging</topic><topic>Leiomyoma - therapy</topic><topic>Magnetic Resonance Imaging</topic><topic>Methods</topic><topic>Morphology</topic><topic>MRgFUS treatment</topic><topic>Nuclear polyhedrosis virus</topic><topic>Other</topic><topic>Radiography</topic><topic>Standard deviation</topic><topic>Ultrasonography, Interventional</topic><topic>Uterine fibroids</topic><topic>Women</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Militello, Carmelo</creatorcontrib><creatorcontrib>Vitabile, Salvatore</creatorcontrib><creatorcontrib>Rundo, Leonardo</creatorcontrib><creatorcontrib>Russo, Giorgio</creatorcontrib><creatorcontrib>Midiri, Massimo</creatorcontrib><creatorcontrib>Gilardi, Maria Carla</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nursing & Allied Health Database</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Computing Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Computer Science Collection</collection><collection>Computer Science Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>ProQuest Biological Science Collection</collection><collection>Computing Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Biological Science Database</collection><collection>Biochemistry Abstracts 1</collection><collection>Research Library (Corporate)</collection><collection>Nursing & Allied Health Premium</collection><collection>Advanced Technologies & Aerospace Database</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>Biotechnology Research Abstracts</collection><jtitle>Computers in biology and medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Militello, Carmelo</au><au>Vitabile, Salvatore</au><au>Rundo, Leonardo</au><au>Russo, Giorgio</au><au>Midiri, Massimo</au><au>Gilardi, Maria Carla</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A fully automatic 2D segmentation method for uterine fibroid in MRgFUS treatment evaluation</atitle><jtitle>Computers in biology and medicine</jtitle><addtitle>Comput Biol Med</addtitle><date>2015-07-01</date><risdate>2015</risdate><volume>62</volume><spage>277</spage><epage>292</epage><pages>277-292</pages><issn>0010-4825</issn><eissn>1879-0534</eissn><coden>CBMDAW</coden><abstract>Abstract Purpose Magnetic Resonance guided Focused UltraSound (MRgFUS) represents a non-invasive surgical approach that uses thermal ablation to treat uterine fibroids. After the MRgFUS treatment, an operator must manually segment the treated fibroid areas to evaluate the NonPerfused Volume (NPV). This manual approach is operator-dependent, introducing issues of result reproducibility, which could lead to errors in the subsequent follow-up phase. Moreover, manual segmentation is time-consuming, and can have a negative impact on the optimization of both machine-time and operator-time. Method To address these issues, in this paper a novel fully automatic method based on the unsupervised Fuzzy C-Means clustering and iterative optimal threshold selection algorithms for uterus and fibroid segmentation is proposed. The developed method could be used to enhance the current manual methodology performed by healthcare operators for post-operative NPV evaluation in uterine fibroid MRgFUS treatments. Results The proposed method was tested on 15 MR datasets of 15 different patients with uterine fibroids and evaluated using area-based and distance-based metrics. A comparison of extracted volume was also performed. Average values for fibroid (ROT) segmentation are SDI=88.67%, JI=80.70%, SE=89.79%, SP=88.73%, MAD=2.200 [pixels], MAXD=6.233 [pixels] and HD=2.988 [pixels]. Moreover, to make a quantitative evaluation of this method, our experimental results were compared with similar literature approaches. Conclusions The proposed method provides a practical approach for the automatic evaluation of the boundary and volume of ablated fibroid regions, without any external user input. The achieved segmentation results show the validity and the effectiveness of the proposed solution.</abstract><cop>United States</cop><pub>Elsevier Ltd</pub><pmid>25966922</pmid><doi>10.1016/j.compbiomed.2015.04.030</doi><tpages>16</tpages></addata></record> |
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subjects | Adaptive thresholding Algorithms Automatic segmentation Automation Databases, Factual Datasets Female Fibroids Fuzzy C-Means clustering Humans Hysterectomy Image Processing, Computer-Assisted - methods Internal Medicine Leiomyoma - diagnostic imaging Leiomyoma - therapy Magnetic Resonance Imaging Methods Morphology MRgFUS treatment Nuclear polyhedrosis virus Other Radiography Standard deviation Ultrasonography, Interventional Uterine fibroids Women |
title | A fully automatic 2D segmentation method for uterine fibroid in MRgFUS treatment evaluation |
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