The potential of interleukin 12 receptor beta 2 (IL12RB2) and tumor necrosis factor receptor superfamily member 8 (TNFRSF8) gene as diagnostic biomarkers of oral lichen planus (OLP)
AbstractObjective. This study evaluated the potential of interleukin 12 receptor beta 2 and tumor necrosis factor receptor superfamily member 8 as diagnostic biomarkers of oral lichen planus (OLP). Materials and methods. The mRNA expression of IL12RB2 and TNFRSF8 in FFPE OLP samples (OLP group, n =...
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Veröffentlicht in: | Acta odontologica Scandinavica 2015-01, Vol.73 (8), p.588-594 |
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description | AbstractObjective. This study evaluated the potential of interleukin 12 receptor beta 2 and tumor necrosis factor receptor superfamily member 8 as diagnostic biomarkers of oral lichen planus (OLP). Materials and methods. The mRNA expression of IL12RB2 and TNFRSF8 in FFPE OLP samples (OLP group, n = 38) were investigated with quantitative reverse transcriptase-polymerase chain reaction (qRT-PCR) analysis and compared to those of chronic non-specific mucositis (Non-OLP group, n = 25) and normal mucosa (Normal group, n = 18). Predictive modeling of the expression of IL12RB2 and TNFRSF8 was constructed using support vector machine (SVM), random forest (RF), linear discriminant analysis (LDA), neural network (NN) and naive Bayes (NB) methods. Results. Normalized expression of IL12RB2 in the OLP group (3.78 ± 1.67) was significantly higher than the Normal group (1.97 ± 1.12), but lower than the Non-OLP group (6.86 ± 1.67). TNFRSF8 gene expression in the OLP group (7.46 ± 1.51) was significantly higher than the Normal group (2.90 ± 1.61), but no significant difference was found between the OLP and Non-OLP groups. The ratio of IL12RB2/TNFRSF8 in the OLP group (0.52 ± 0.23) was significantly lower than the Normal group (0.74 ± 0.39) and the Non-OLP group (1.07 ± 0.38). In the predictive modeling, the area under receiver operating characteristic (ROC) curves (AUC) ranged from 0.83-0.92 and their accuracy was higher than 0.75 in all methods. Conclusions. The IL12RB2/TNFRSF8 ratio can be a useful diagnostic tool for OLP. |
doi_str_mv | 10.3109/00016357.2014.967719 |
format | Article |
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This study evaluated the potential of interleukin 12 receptor beta 2 and tumor necrosis factor receptor superfamily member 8 as diagnostic biomarkers of oral lichen planus (OLP). Materials and methods. The mRNA expression of IL12RB2 and TNFRSF8 in FFPE OLP samples (OLP group, n = 38) were investigated with quantitative reverse transcriptase-polymerase chain reaction (qRT-PCR) analysis and compared to those of chronic non-specific mucositis (Non-OLP group, n = 25) and normal mucosa (Normal group, n = 18). Predictive modeling of the expression of IL12RB2 and TNFRSF8 was constructed using support vector machine (SVM), random forest (RF), linear discriminant analysis (LDA), neural network (NN) and naive Bayes (NB) methods. Results. Normalized expression of IL12RB2 in the OLP group (3.78 ± 1.67) was significantly higher than the Normal group (1.97 ± 1.12), but lower than the Non-OLP group (6.86 ± 1.67). TNFRSF8 gene expression in the OLP group (7.46 ± 1.51) was significantly higher than the Normal group (2.90 ± 1.61), but no significant difference was found between the OLP and Non-OLP groups. The ratio of IL12RB2/TNFRSF8 in the OLP group (0.52 ± 0.23) was significantly lower than the Normal group (0.74 ± 0.39) and the Non-OLP group (1.07 ± 0.38). In the predictive modeling, the area under receiver operating characteristic (ROC) curves (AUC) ranged from 0.83-0.92 and their accuracy was higher than 0.75 in all methods. Conclusions. The IL12RB2/TNFRSF8 ratio can be a useful diagnostic tool for OLP.</description><identifier>ISSN: 0001-6357</identifier><identifier>EISSN: 1502-3850</identifier><identifier>DOI: 10.3109/00016357.2014.967719</identifier><identifier>PMID: 25915578</identifier><language>eng</language><publisher>England: Informa Healthcare</publisher><subject>Adolescent ; Adult ; Aged ; Aged, 80 and over ; Area Under Curve ; Bayes Theorem ; biomarker ; Biomarkers - analysis ; Dentistry ; Discriminant Analysis ; Female ; Forecasting ; formalin-fixed ; Humans ; IL12RB2 ; Ki-1 Antigen - analysis ; Lichen Planus, Oral - metabolism ; Lichen Planus, Oral - pathology ; Linear Models ; Male ; Middle Aged ; Mouth Mucosa - chemistry ; Mouth Mucosa - pathology ; Neural Networks (Computer) ; oral lichen planus (OLP) ; paraffin-embedded (FFPE) ; predictive modeling ; Receptors, Interleukin-12 - analysis ; Reverse Transcriptase Polymerase Chain Reaction - methods ; ROC Curve ; Stomatitis - metabolism ; Stomatitis - pathology ; TNFRSF8 ; Young Adult</subject><ispartof>Acta odontologica Scandinavica, 2015-01, Vol.73 (8), p.588-594</ispartof><rights>Informa Healthcare 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c418t-4e2c1552568e3aff27eaaa7dcaa55aa59c54d1ba26f28b03ef61d0ea3f1bcca3</citedby><cites>FETCH-LOGICAL-c418t-4e2c1552568e3aff27eaaa7dcaa55aa59c54d1ba26f28b03ef61d0ea3f1bcca3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25915578$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Jeon, Seung-Ho</creatorcontrib><creatorcontrib>Jeon, Eun-Hyoung</creatorcontrib><creatorcontrib>Lee, Jin-Yong</creatorcontrib><creatorcontrib>Kim, Yeon-Sun</creatorcontrib><creatorcontrib>Yoon, Hye-Jung</creatorcontrib><creatorcontrib>Hong, Sam-Pyo</creatorcontrib><creatorcontrib>Lee, Jong-Ho</creatorcontrib><title>The potential of interleukin 12 receptor beta 2 (IL12RB2) and tumor necrosis factor receptor superfamily member 8 (TNFRSF8) gene as diagnostic biomarkers of oral lichen planus (OLP)</title><title>Acta odontologica Scandinavica</title><addtitle>Acta Odontol Scand</addtitle><description>AbstractObjective. This study evaluated the potential of interleukin 12 receptor beta 2 and tumor necrosis factor receptor superfamily member 8 as diagnostic biomarkers of oral lichen planus (OLP). Materials and methods. The mRNA expression of IL12RB2 and TNFRSF8 in FFPE OLP samples (OLP group, n = 38) were investigated with quantitative reverse transcriptase-polymerase chain reaction (qRT-PCR) analysis and compared to those of chronic non-specific mucositis (Non-OLP group, n = 25) and normal mucosa (Normal group, n = 18). Predictive modeling of the expression of IL12RB2 and TNFRSF8 was constructed using support vector machine (SVM), random forest (RF), linear discriminant analysis (LDA), neural network (NN) and naive Bayes (NB) methods. Results. Normalized expression of IL12RB2 in the OLP group (3.78 ± 1.67) was significantly higher than the Normal group (1.97 ± 1.12), but lower than the Non-OLP group (6.86 ± 1.67). TNFRSF8 gene expression in the OLP group (7.46 ± 1.51) was significantly higher than the Normal group (2.90 ± 1.61), but no significant difference was found between the OLP and Non-OLP groups. The ratio of IL12RB2/TNFRSF8 in the OLP group (0.52 ± 0.23) was significantly lower than the Normal group (0.74 ± 0.39) and the Non-OLP group (1.07 ± 0.38). In the predictive modeling, the area under receiver operating characteristic (ROC) curves (AUC) ranged from 0.83-0.92 and their accuracy was higher than 0.75 in all methods. Conclusions. The IL12RB2/TNFRSF8 ratio can be a useful diagnostic tool for OLP.</description><subject>Adolescent</subject><subject>Adult</subject><subject>Aged</subject><subject>Aged, 80 and over</subject><subject>Area Under Curve</subject><subject>Bayes Theorem</subject><subject>biomarker</subject><subject>Biomarkers - analysis</subject><subject>Dentistry</subject><subject>Discriminant Analysis</subject><subject>Female</subject><subject>Forecasting</subject><subject>formalin-fixed</subject><subject>Humans</subject><subject>IL12RB2</subject><subject>Ki-1 Antigen - analysis</subject><subject>Lichen Planus, Oral - metabolism</subject><subject>Lichen Planus, Oral - pathology</subject><subject>Linear Models</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Mouth Mucosa - chemistry</subject><subject>Mouth Mucosa - pathology</subject><subject>Neural Networks (Computer)</subject><subject>oral lichen planus (OLP)</subject><subject>paraffin-embedded (FFPE)</subject><subject>predictive modeling</subject><subject>Receptors, Interleukin-12 - analysis</subject><subject>Reverse Transcriptase Polymerase Chain Reaction - methods</subject><subject>ROC Curve</subject><subject>Stomatitis - metabolism</subject><subject>Stomatitis - pathology</subject><subject>TNFRSF8</subject><subject>Young Adult</subject><issn>0001-6357</issn><issn>1502-3850</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kcFu1DAQhiMEokvhDRDycfewi-3EiXMBQcVCpRVFZe_RxBl33SZ2ajtC-2C8H462rcSlB8uy_P0z_8yfZe8Z3eSM1h8ppazMRbXhlBWbuqwqVr_IFkxQvs6loC-zxYysZ-YsexPCbXoWtaxfZ2dc1EyISi6yv_sDktFFtNFAT5wmxkb0PU53xhLGiUeFY3SetBiBcLK83DF-_ZWvCNiOxGlIXxaVd8EEokHN6JMmTCN6DYPpj2TAoUVPJFnuf26vf2_litygRQKBdAZurAvRKNIaN4C_Qx9mL84nT71RB7Rk7MFOgSyvdr9Wb7NXGvqA7x7u82y__ba_-LHeXX2_vPiyW6uCybgukKs0JxelxBy05hUCQNUpACHSqZUoOtYCLzWXLc1Rl6yjCLlmrVKQn2fLU9nRu_sJQ2wGExT2yQm6KTSsrAWrSi5lQosTOm8ieNTN6E2a5Ngw2sx5NY95NXNezSmvJPvw0GFqB-yeRI8BJeDzCTBWOz_AH-f7rolw7J3XHqwyYS7_bItP_1U4IPTxoMBjc-smb9P-nvf4D0aouU0</recordid><startdate>20150101</startdate><enddate>20150101</enddate><creator>Jeon, Seung-Ho</creator><creator>Jeon, Eun-Hyoung</creator><creator>Lee, Jin-Yong</creator><creator>Kim, Yeon-Sun</creator><creator>Yoon, Hye-Jung</creator><creator>Hong, Sam-Pyo</creator><creator>Lee, Jong-Ho</creator><general>Informa Healthcare</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20150101</creationdate><title>The potential of interleukin 12 receptor beta 2 (IL12RB2) and tumor necrosis factor receptor superfamily member 8 (TNFRSF8) gene as diagnostic biomarkers of oral lichen planus (OLP)</title><author>Jeon, Seung-Ho ; Jeon, Eun-Hyoung ; Lee, Jin-Yong ; Kim, Yeon-Sun ; Yoon, Hye-Jung ; Hong, Sam-Pyo ; Lee, Jong-Ho</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c418t-4e2c1552568e3aff27eaaa7dcaa55aa59c54d1ba26f28b03ef61d0ea3f1bcca3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Adolescent</topic><topic>Adult</topic><topic>Aged</topic><topic>Aged, 80 and over</topic><topic>Area Under Curve</topic><topic>Bayes Theorem</topic><topic>biomarker</topic><topic>Biomarkers - analysis</topic><topic>Dentistry</topic><topic>Discriminant Analysis</topic><topic>Female</topic><topic>Forecasting</topic><topic>formalin-fixed</topic><topic>Humans</topic><topic>IL12RB2</topic><topic>Ki-1 Antigen - analysis</topic><topic>Lichen Planus, Oral - metabolism</topic><topic>Lichen Planus, Oral - pathology</topic><topic>Linear Models</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Mouth Mucosa - chemistry</topic><topic>Mouth Mucosa - pathology</topic><topic>Neural Networks (Computer)</topic><topic>oral lichen planus (OLP)</topic><topic>paraffin-embedded (FFPE)</topic><topic>predictive modeling</topic><topic>Receptors, Interleukin-12 - analysis</topic><topic>Reverse Transcriptase Polymerase Chain Reaction - methods</topic><topic>ROC Curve</topic><topic>Stomatitis - metabolism</topic><topic>Stomatitis - pathology</topic><topic>TNFRSF8</topic><topic>Young Adult</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jeon, Seung-Ho</creatorcontrib><creatorcontrib>Jeon, Eun-Hyoung</creatorcontrib><creatorcontrib>Lee, Jin-Yong</creatorcontrib><creatorcontrib>Kim, Yeon-Sun</creatorcontrib><creatorcontrib>Yoon, Hye-Jung</creatorcontrib><creatorcontrib>Hong, Sam-Pyo</creatorcontrib><creatorcontrib>Lee, Jong-Ho</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Acta odontologica Scandinavica</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jeon, Seung-Ho</au><au>Jeon, Eun-Hyoung</au><au>Lee, Jin-Yong</au><au>Kim, Yeon-Sun</au><au>Yoon, Hye-Jung</au><au>Hong, Sam-Pyo</au><au>Lee, Jong-Ho</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The potential of interleukin 12 receptor beta 2 (IL12RB2) and tumor necrosis factor receptor superfamily member 8 (TNFRSF8) gene as diagnostic biomarkers of oral lichen planus (OLP)</atitle><jtitle>Acta odontologica Scandinavica</jtitle><addtitle>Acta Odontol Scand</addtitle><date>2015-01-01</date><risdate>2015</risdate><volume>73</volume><issue>8</issue><spage>588</spage><epage>594</epage><pages>588-594</pages><issn>0001-6357</issn><eissn>1502-3850</eissn><abstract>AbstractObjective. This study evaluated the potential of interleukin 12 receptor beta 2 and tumor necrosis factor receptor superfamily member 8 as diagnostic biomarkers of oral lichen planus (OLP). Materials and methods. The mRNA expression of IL12RB2 and TNFRSF8 in FFPE OLP samples (OLP group, n = 38) were investigated with quantitative reverse transcriptase-polymerase chain reaction (qRT-PCR) analysis and compared to those of chronic non-specific mucositis (Non-OLP group, n = 25) and normal mucosa (Normal group, n = 18). Predictive modeling of the expression of IL12RB2 and TNFRSF8 was constructed using support vector machine (SVM), random forest (RF), linear discriminant analysis (LDA), neural network (NN) and naive Bayes (NB) methods. Results. Normalized expression of IL12RB2 in the OLP group (3.78 ± 1.67) was significantly higher than the Normal group (1.97 ± 1.12), but lower than the Non-OLP group (6.86 ± 1.67). TNFRSF8 gene expression in the OLP group (7.46 ± 1.51) was significantly higher than the Normal group (2.90 ± 1.61), but no significant difference was found between the OLP and Non-OLP groups. The ratio of IL12RB2/TNFRSF8 in the OLP group (0.52 ± 0.23) was significantly lower than the Normal group (0.74 ± 0.39) and the Non-OLP group (1.07 ± 0.38). In the predictive modeling, the area under receiver operating characteristic (ROC) curves (AUC) ranged from 0.83-0.92 and their accuracy was higher than 0.75 in all methods. Conclusions. The IL12RB2/TNFRSF8 ratio can be a useful diagnostic tool for OLP.</abstract><cop>England</cop><pub>Informa Healthcare</pub><pmid>25915578</pmid><doi>10.3109/00016357.2014.967719</doi><tpages>7</tpages></addata></record> |
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subjects | Adolescent Adult Aged Aged, 80 and over Area Under Curve Bayes Theorem biomarker Biomarkers - analysis Dentistry Discriminant Analysis Female Forecasting formalin-fixed Humans IL12RB2 Ki-1 Antigen - analysis Lichen Planus, Oral - metabolism Lichen Planus, Oral - pathology Linear Models Male Middle Aged Mouth Mucosa - chemistry Mouth Mucosa - pathology Neural Networks (Computer) oral lichen planus (OLP) paraffin-embedded (FFPE) predictive modeling Receptors, Interleukin-12 - analysis Reverse Transcriptase Polymerase Chain Reaction - methods ROC Curve Stomatitis - metabolism Stomatitis - pathology TNFRSF8 Young Adult |
title | The potential of interleukin 12 receptor beta 2 (IL12RB2) and tumor necrosis factor receptor superfamily member 8 (TNFRSF8) gene as diagnostic biomarkers of oral lichen planus (OLP) |
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