Recent progresses in the exploration of machine learning methods as in-silico ADME prediction tools
In-silico methods have been explored as potential tools for assessing ADME and ADME regulatory properties particularly in early drug discovery stages. Machine learning methods, with their ability in classifying diverse structures and complex mechanisms, are well suited for predicting ADME and ADME r...
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Veröffentlicht in: | Advanced drug delivery reviews 2015-06, Vol.86, p.83-100 |
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creator | Tao, L. Zhang, P. Qin, C. Chen, S.Y. Zhang, C. Chen, Z. Zhu, F. Yang, S.Y. Wei, Y.Q. Chen, Y.Z. |
description | In-silico methods have been explored as potential tools for assessing ADME and ADME regulatory properties particularly in early drug discovery stages. Machine learning methods, with their ability in classifying diverse structures and complex mechanisms, are well suited for predicting ADME and ADME regulatory properties. Recent efforts have been directed at the broadening of application scopes and the improvement of predictive performance with particular focuses on the coverage of ADME properties, and exploration of more diversified training data, appropriate molecular features, and consensus modeling. Moreover, several online machine learning ADME prediction servers have emerged. Here we review these progresses and discuss the performances, application prospects and challenges of exploring machine learning methods as useful tools in predicting ADME and ADME regulatory properties.
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doi_str_mv | 10.1016/j.addr.2015.03.014 |
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[Display omitted]</description><identifier>ISSN: 0169-409X</identifier><identifier>EISSN: 1872-8294</identifier><identifier>DOI: 10.1016/j.addr.2015.03.014</identifier><identifier>PMID: 26037068</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Absorption ; ADME ; Computer Simulation ; Distribution ; Drug discovery ; Excretion ; Humans ; Machine Learning ; Metabolism ; Models, Biological ; Molecular descriptors ; Pharmaceutical Preparations - metabolism ; Pharmacokinetics ; QSAR</subject><ispartof>Advanced drug delivery reviews, 2015-06, Vol.86, p.83-100</ispartof><rights>2015</rights><rights>Copyright © 2015. Published by Elsevier B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c426t-b15b6c68cae490bf88755fe6006c40436bb1d7bf75c9b2580777e6a47d097c963</citedby><cites>FETCH-LOGICAL-c426t-b15b6c68cae490bf88755fe6006c40436bb1d7bf75c9b2580777e6a47d097c963</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0169409X15000496$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65534</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26037068$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tao, L.</creatorcontrib><creatorcontrib>Zhang, P.</creatorcontrib><creatorcontrib>Qin, C.</creatorcontrib><creatorcontrib>Chen, S.Y.</creatorcontrib><creatorcontrib>Zhang, C.</creatorcontrib><creatorcontrib>Chen, Z.</creatorcontrib><creatorcontrib>Zhu, F.</creatorcontrib><creatorcontrib>Yang, S.Y.</creatorcontrib><creatorcontrib>Wei, Y.Q.</creatorcontrib><creatorcontrib>Chen, Y.Z.</creatorcontrib><title>Recent progresses in the exploration of machine learning methods as in-silico ADME prediction tools</title><title>Advanced drug delivery reviews</title><addtitle>Adv Drug Deliv Rev</addtitle><description>In-silico methods have been explored as potential tools for assessing ADME and ADME regulatory properties particularly in early drug discovery stages. Machine learning methods, with their ability in classifying diverse structures and complex mechanisms, are well suited for predicting ADME and ADME regulatory properties. Recent efforts have been directed at the broadening of application scopes and the improvement of predictive performance with particular focuses on the coverage of ADME properties, and exploration of more diversified training data, appropriate molecular features, and consensus modeling. Moreover, several online machine learning ADME prediction servers have emerged. Here we review these progresses and discuss the performances, application prospects and challenges of exploring machine learning methods as useful tools in predicting ADME and ADME regulatory properties.
[Display omitted]</description><subject>Absorption</subject><subject>ADME</subject><subject>Computer Simulation</subject><subject>Distribution</subject><subject>Drug discovery</subject><subject>Excretion</subject><subject>Humans</subject><subject>Machine Learning</subject><subject>Metabolism</subject><subject>Models, Biological</subject><subject>Molecular descriptors</subject><subject>Pharmaceutical Preparations - metabolism</subject><subject>Pharmacokinetics</subject><subject>QSAR</subject><issn>0169-409X</issn><issn>1872-8294</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kEtLxDAUhYMozvj4Ay4kSzetN30kLbgRHR8wIoiCu5Cmt06GthmTjui_N3VGl67O5jsHzkfICYOYAePny1jVtYsTYHkMaQws2yFTVogkKpIy2yXTAJVRBuXrhBx4vwRgieCwTyYJh1QAL6ZEP6HGfqArZ98ceo-emp4OC6T4uWqtU4OxPbUN7ZRemB5pi8r1pn-jHQ4LW3uqxkbkTWu0pZfXD7OwhbXRP8XB2tYfkb1GtR6Pt3lIXm5mz1d30fzx9v7qch7pLOFDVLG84poXWmFWQtUUhcjzBjkA1xlkKa8qVouqEbkuqyQvQAiBXGWihlLokqeH5GyzG868r9EPsjNeY9uqHu3ay2AjvBasGNFkg2pnvXfYyJUznXJfkoEc5cqlHOXKUa6EVAa5oXS63V9XHdZ_lV-bAbjYABhefhh00muDvQ46HOpB1tb8t_8NIw2LUw</recordid><startdate>20150623</startdate><enddate>20150623</enddate><creator>Tao, L.</creator><creator>Zhang, P.</creator><creator>Qin, C.</creator><creator>Chen, S.Y.</creator><creator>Zhang, C.</creator><creator>Chen, Z.</creator><creator>Zhu, F.</creator><creator>Yang, S.Y.</creator><creator>Wei, Y.Q.</creator><creator>Chen, Y.Z.</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20150623</creationdate><title>Recent progresses in the exploration of machine learning methods as in-silico ADME prediction tools</title><author>Tao, L. ; Zhang, P. ; Qin, C. ; Chen, S.Y. ; Zhang, C. ; Chen, Z. ; Zhu, F. ; Yang, S.Y. ; Wei, Y.Q. ; Chen, Y.Z.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c426t-b15b6c68cae490bf88755fe6006c40436bb1d7bf75c9b2580777e6a47d097c963</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Absorption</topic><topic>ADME</topic><topic>Computer Simulation</topic><topic>Distribution</topic><topic>Drug discovery</topic><topic>Excretion</topic><topic>Humans</topic><topic>Machine Learning</topic><topic>Metabolism</topic><topic>Models, Biological</topic><topic>Molecular descriptors</topic><topic>Pharmaceutical Preparations - metabolism</topic><topic>Pharmacokinetics</topic><topic>QSAR</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tao, L.</creatorcontrib><creatorcontrib>Zhang, P.</creatorcontrib><creatorcontrib>Qin, C.</creatorcontrib><creatorcontrib>Chen, S.Y.</creatorcontrib><creatorcontrib>Zhang, C.</creatorcontrib><creatorcontrib>Chen, Z.</creatorcontrib><creatorcontrib>Zhu, F.</creatorcontrib><creatorcontrib>Yang, S.Y.</creatorcontrib><creatorcontrib>Wei, Y.Q.</creatorcontrib><creatorcontrib>Chen, Y.Z.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Advanced drug delivery reviews</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tao, L.</au><au>Zhang, P.</au><au>Qin, C.</au><au>Chen, S.Y.</au><au>Zhang, C.</au><au>Chen, Z.</au><au>Zhu, F.</au><au>Yang, S.Y.</au><au>Wei, Y.Q.</au><au>Chen, Y.Z.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Recent progresses in the exploration of machine learning methods as in-silico ADME prediction tools</atitle><jtitle>Advanced drug delivery reviews</jtitle><addtitle>Adv Drug Deliv Rev</addtitle><date>2015-06-23</date><risdate>2015</risdate><volume>86</volume><spage>83</spage><epage>100</epage><pages>83-100</pages><issn>0169-409X</issn><eissn>1872-8294</eissn><abstract>In-silico methods have been explored as potential tools for assessing ADME and ADME regulatory properties particularly in early drug discovery stages. 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subjects | Absorption ADME Computer Simulation Distribution Drug discovery Excretion Humans Machine Learning Metabolism Models, Biological Molecular descriptors Pharmaceutical Preparations - metabolism Pharmacokinetics QSAR |
title | Recent progresses in the exploration of machine learning methods as in-silico ADME prediction tools |
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