Fully Integrated Lab-on-a-Disc for Nucleic Acid Analysis of Food-Borne Pathogens
This paper describes a micro total analysis system for molecular analysis of Salmonella, a major food-borne pathogen. We developed a centrifugal microfluidic device, which integrated the three main steps of pathogen detection, DNA extraction, isothermal recombinase polymerase amplification (RPA), an...
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Veröffentlicht in: | Analytical chemistry (Washington) 2014-04, Vol.86 (8), p.3841-3848 |
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description | This paper describes a micro total analysis system for molecular analysis of Salmonella, a major food-borne pathogen. We developed a centrifugal microfluidic device, which integrated the three main steps of pathogen detection, DNA extraction, isothermal recombinase polymerase amplification (RPA), and detection, onto a single disc. A single laser diode was utilized for wireless control of valve actuation, cell lysis, and noncontact heating in the isothermal amplification step, thereby yielding a compact and miniaturized system. To achieve high detection sensitivity, rare cells in large volumes of phosphate-buffered saline (PBS) and milk samples were enriched before loading onto the disc by using antibody-coated magnetic beads. The entire procedure, from DNA extraction through to detection, was completed within 30 min in a fully automated fashion. The final detection was carried out using lateral flow strips by direct visual observation; detection limit was 10 cfu/mL and 102 cfu/mL in PBS and milk, respectively. Our device allows rapid molecular diagnostic analysis and does not require specially trained personnel or expensive equipment. Thus, we expect that it would have an array of potential applications, including in the detection of food-borne pathogens, environmental monitoring, and molecular diagnostics in resource-limited settings. |
doi_str_mv | 10.1021/ac403971h |
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We developed a centrifugal microfluidic device, which integrated the three main steps of pathogen detection, DNA extraction, isothermal recombinase polymerase amplification (RPA), and detection, onto a single disc. A single laser diode was utilized for wireless control of valve actuation, cell lysis, and noncontact heating in the isothermal amplification step, thereby yielding a compact and miniaturized system. To achieve high detection sensitivity, rare cells in large volumes of phosphate-buffered saline (PBS) and milk samples were enriched before loading onto the disc by using antibody-coated magnetic beads. The entire procedure, from DNA extraction through to detection, was completed within 30 min in a fully automated fashion. The final detection was carried out using lateral flow strips by direct visual observation; detection limit was 10 cfu/mL and 102 cfu/mL in PBS and milk, respectively. Our device allows rapid molecular diagnostic analysis and does not require specially trained personnel or expensive equipment. Thus, we expect that it would have an array of potential applications, including in the detection of food-borne pathogens, environmental monitoring, and molecular diagnostics in resource-limited settings.</description><identifier>ISSN: 0003-2700</identifier><identifier>EISSN: 1520-6882</identifier><identifier>DOI: 10.1021/ac403971h</identifier><identifier>PMID: 24635032</identifier><identifier>CODEN: ANCHAM</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Amplification ; Analytical chemistry ; Animals ; Antibodies - chemistry ; Colony Count, Microbial ; Deoxyribonucleic acid ; Devices ; Diagnostic software ; Discs ; Disks ; DNA ; DNA, Bacterial - chemistry ; DNA, Bacterial - isolation & purification ; Extraction ; Food Microbiology - methods ; Heating ; Lab-On-A-Chip Devices ; Magnetics ; Milk ; Milk - microbiology ; Molecules ; Nucleic Acid Amplification Techniques - methods ; Nucleic Acids - analysis ; Pathogens ; Salmonella ; Salmonella - chemistry</subject><ispartof>Analytical chemistry (Washington), 2014-04, Vol.86 (8), p.3841-3848</ispartof><rights>Copyright © 2014 American Chemical Society</rights><rights>Copyright American Chemical Society Apr 15, 2014</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a446t-949bd7c8ee628b7d70cef2bd202c435eb9e23fb72a6c549923628230eccbf0ed3</citedby><cites>FETCH-LOGICAL-a446t-949bd7c8ee628b7d70cef2bd202c435eb9e23fb72a6c549923628230eccbf0ed3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/ac403971h$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/ac403971h$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>314,776,780,2751,27055,27903,27904,56716,56766</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24635032$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kim, Tae-Hyeong</creatorcontrib><creatorcontrib>Park, Juhee</creatorcontrib><creatorcontrib>Kim, Chi-Ju</creatorcontrib><creatorcontrib>Cho, Yoon-Kyoung</creatorcontrib><title>Fully Integrated Lab-on-a-Disc for Nucleic Acid Analysis of Food-Borne Pathogens</title><title>Analytical chemistry (Washington)</title><addtitle>Anal. Chem</addtitle><description>This paper describes a micro total analysis system for molecular analysis of Salmonella, a major food-borne pathogen. We developed a centrifugal microfluidic device, which integrated the three main steps of pathogen detection, DNA extraction, isothermal recombinase polymerase amplification (RPA), and detection, onto a single disc. A single laser diode was utilized for wireless control of valve actuation, cell lysis, and noncontact heating in the isothermal amplification step, thereby yielding a compact and miniaturized system. To achieve high detection sensitivity, rare cells in large volumes of phosphate-buffered saline (PBS) and milk samples were enriched before loading onto the disc by using antibody-coated magnetic beads. The entire procedure, from DNA extraction through to detection, was completed within 30 min in a fully automated fashion. The final detection was carried out using lateral flow strips by direct visual observation; detection limit was 10 cfu/mL and 102 cfu/mL in PBS and milk, respectively. Our device allows rapid molecular diagnostic analysis and does not require specially trained personnel or expensive equipment. Thus, we expect that it would have an array of potential applications, including in the detection of food-borne pathogens, environmental monitoring, and molecular diagnostics in resource-limited settings.</description><subject>Amplification</subject><subject>Analytical chemistry</subject><subject>Animals</subject><subject>Antibodies - chemistry</subject><subject>Colony Count, Microbial</subject><subject>Deoxyribonucleic acid</subject><subject>Devices</subject><subject>Diagnostic software</subject><subject>Discs</subject><subject>Disks</subject><subject>DNA</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - isolation & purification</subject><subject>Extraction</subject><subject>Food Microbiology - methods</subject><subject>Heating</subject><subject>Lab-On-A-Chip Devices</subject><subject>Magnetics</subject><subject>Milk</subject><subject>Milk - microbiology</subject><subject>Molecules</subject><subject>Nucleic Acid Amplification Techniques - methods</subject><subject>Nucleic Acids - analysis</subject><subject>Pathogens</subject><subject>Salmonella</subject><subject>Salmonella - chemistry</subject><issn>0003-2700</issn><issn>1520-6882</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqN0U1PGzEQBmALFZFAOfQPVJaqSnAwHY-9X8fwEUCKWg7teeX1zpJFmzW1dw_593UIRAgO5eTL43dG8zL2RcKZBJQ_jNWgikwu99hUJggizXP8xKYAoARmABN2GMIDgJQg0wM2QZ2qBBRO2d187Lo1v-0HuvdmoJovTCVcL4y4bIPljfP852g7ai2f2bbms95069AG7ho-d64W5873xO_MsHT31IfPbL8xXaDj5_eI_Zlf_b64EYtf17cXs4UwWqeDKHRR1ZnNiVLMq6zOwFKDVY2AVquEqoJQNVWGJrWJLgpU0aECsrZqgGp1xE62uY_e_R0pDOUq7ktdZ3pyYyhlGv8AYA7_p4nSeYKYZh-gMqp4RIz02xv64EYfr_OkCo2ySDazT7fKeheCp6Z89O3K-HUpodyUV-7Ki_brc-JYrajeyZe2Ivi-BcaGV9PeBf0DpZCcsw</recordid><startdate>20140415</startdate><enddate>20140415</enddate><creator>Kim, Tae-Hyeong</creator><creator>Park, Juhee</creator><creator>Kim, Chi-Ju</creator><creator>Cho, Yoon-Kyoung</creator><general>American Chemical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7TM</scope><scope>7U5</scope><scope>7U7</scope><scope>7U9</scope><scope>8BQ</scope><scope>8FD</scope><scope>C1K</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>H8G</scope><scope>H94</scope><scope>JG9</scope><scope>JQ2</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><scope>7X8</scope></search><sort><creationdate>20140415</creationdate><title>Fully Integrated Lab-on-a-Disc for Nucleic Acid Analysis of Food-Borne Pathogens</title><author>Kim, Tae-Hyeong ; Park, Juhee ; Kim, Chi-Ju ; Cho, Yoon-Kyoung</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a446t-949bd7c8ee628b7d70cef2bd202c435eb9e23fb72a6c549923628230eccbf0ed3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Amplification</topic><topic>Analytical chemistry</topic><topic>Animals</topic><topic>Antibodies - chemistry</topic><topic>Colony Count, Microbial</topic><topic>Deoxyribonucleic acid</topic><topic>Devices</topic><topic>Diagnostic software</topic><topic>Discs</topic><topic>Disks</topic><topic>DNA</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - isolation & purification</topic><topic>Extraction</topic><topic>Food Microbiology - methods</topic><topic>Heating</topic><topic>Lab-On-A-Chip Devices</topic><topic>Magnetics</topic><topic>Milk</topic><topic>Milk - microbiology</topic><topic>Molecules</topic><topic>Nucleic Acid Amplification Techniques - methods</topic><topic>Nucleic Acids - analysis</topic><topic>Pathogens</topic><topic>Salmonella</topic><topic>Salmonella - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kim, Tae-Hyeong</creatorcontrib><creatorcontrib>Park, Juhee</creatorcontrib><creatorcontrib>Kim, Chi-Ju</creatorcontrib><creatorcontrib>Cho, Yoon-Kyoung</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Toxicology Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Copper Technical Reference Library</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Analytical chemistry (Washington)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kim, Tae-Hyeong</au><au>Park, Juhee</au><au>Kim, Chi-Ju</au><au>Cho, Yoon-Kyoung</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Fully Integrated Lab-on-a-Disc for Nucleic Acid Analysis of Food-Borne Pathogens</atitle><jtitle>Analytical chemistry (Washington)</jtitle><addtitle>Anal. Chem</addtitle><date>2014-04-15</date><risdate>2014</risdate><volume>86</volume><issue>8</issue><spage>3841</spage><epage>3848</epage><pages>3841-3848</pages><issn>0003-2700</issn><eissn>1520-6882</eissn><coden>ANCHAM</coden><abstract>This paper describes a micro total analysis system for molecular analysis of Salmonella, a major food-borne pathogen. We developed a centrifugal microfluidic device, which integrated the three main steps of pathogen detection, DNA extraction, isothermal recombinase polymerase amplification (RPA), and detection, onto a single disc. A single laser diode was utilized for wireless control of valve actuation, cell lysis, and noncontact heating in the isothermal amplification step, thereby yielding a compact and miniaturized system. To achieve high detection sensitivity, rare cells in large volumes of phosphate-buffered saline (PBS) and milk samples were enriched before loading onto the disc by using antibody-coated magnetic beads. The entire procedure, from DNA extraction through to detection, was completed within 30 min in a fully automated fashion. The final detection was carried out using lateral flow strips by direct visual observation; detection limit was 10 cfu/mL and 102 cfu/mL in PBS and milk, respectively. Our device allows rapid molecular diagnostic analysis and does not require specially trained personnel or expensive equipment. Thus, we expect that it would have an array of potential applications, including in the detection of food-borne pathogens, environmental monitoring, and molecular diagnostics in resource-limited settings.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>24635032</pmid><doi>10.1021/ac403971h</doi><tpages>8</tpages></addata></record> |
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subjects | Amplification Analytical chemistry Animals Antibodies - chemistry Colony Count, Microbial Deoxyribonucleic acid Devices Diagnostic software Discs Disks DNA DNA, Bacterial - chemistry DNA, Bacterial - isolation & purification Extraction Food Microbiology - methods Heating Lab-On-A-Chip Devices Magnetics Milk Milk - microbiology Molecules Nucleic Acid Amplification Techniques - methods Nucleic Acids - analysis Pathogens Salmonella Salmonella - chemistry |
title | Fully Integrated Lab-on-a-Disc for Nucleic Acid Analysis of Food-Borne Pathogens |
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