Comparison of early transcriptome responses to copper and cadmium in rice roots

The phytotoxic effects of copper (Cu) and cadmium (Cd) on plant growth are well documented. However, Cu and Cd toxicity targets and the cellular systems contributing to acquisition of tolerance are not fully understood at the molecular level. We aimed to identify genes and pathways that discriminate...

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Veröffentlicht in:Plant molecular biology 2013-03, Vol.81 (4-5), p.507-522
Hauptverfasser: Lin, Chung-Yi, Trinh, Ngoc Nam, Fu, Shih-Feng, Hsiung, Yu-Chyuan, Chia, Li-Chiao, Lin, Chung-Wen, Huang, Hao-Jen
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container_end_page 522
container_issue 4-5
container_start_page 507
container_title Plant molecular biology
container_volume 81
creator Lin, Chung-Yi
Trinh, Ngoc Nam
Fu, Shih-Feng
Hsiung, Yu-Chyuan
Chia, Li-Chiao
Lin, Chung-Wen
Huang, Hao-Jen
description The phytotoxic effects of copper (Cu) and cadmium (Cd) on plant growth are well documented. However, Cu and Cd toxicity targets and the cellular systems contributing to acquisition of tolerance are not fully understood at the molecular level. We aimed to identify genes and pathways that discriminate the actions of Cu and Cd in rice roots ( Oryza sativa L. cv. TN67). The transcripts of 1,450 and 1,172 genes were regulated after Cu and Cd treatments, respectively. We identified 882 genes specifically respond to Cu treatment, and 604 unique genes as Cd-responsive by comparison of expression profiles of these two regulated gene groups. Gene ontology analysis for 538 genes involved in primary metabolism, oxidation reduction and response to stimulus was changed in response to both metals. In the individual aspect, Cu specifically altered levels of genes involved in vesicle trafficking transport, fatty acid metabolism and cellular component biogenesis. Cd-regulated genes related to unfolded protein binding and sulfate assimilation. To further characterize the functions of vesicle trafficking transport under Cu stress, interference of excytosis in root tissues was conducted by inhibitors and silencing of Exo70 genes. It was demonstrated that vesicle-trafficking is required for mediation of Cu-induced reactive oxygen species (ROS) production in root tissues. These results may provide new insights into understanding the molecular basis of the early metal stress response in plants.
doi_str_mv 10.1007/s11103-013-0020-9
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To further characterize the functions of vesicle trafficking transport under Cu stress, interference of excytosis in root tissues was conducted by inhibitors and silencing of Exo70 genes. It was demonstrated that vesicle-trafficking is required for mediation of Cu-induced reactive oxygen species (ROS) production in root tissues. 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subjects Biochemistry
Biomedical and Life Sciences
Cadmium
Cadmium - toxicity
Copper
Copper - toxicity
Gene Expression Profiling
Gene Expression Regulation, Plant - drug effects
Gene Silencing - drug effects
Genes, Plant - genetics
Life Sciences
Molecular biology
Molecular Sequence Annotation
Nicotiana - drug effects
Nicotiana - genetics
Nicotiana - virology
Oligonucleotide Array Sequence Analysis
Oryza - drug effects
Oryza - genetics
Oryza - growth & development
Oryza sativa
Plant biology
Plant growth
Plant Pathology
Plant Proteins - genetics
Plant Proteins - metabolism
Plant Roots - drug effects
Plant Roots - genetics
Plant Roots - growth & development
Plant Sciences
Plant tissues
Plant Viruses - drug effects
Plant Viruses - genetics
Reactive Oxygen Species - metabolism
Reproducibility of Results
Reverse Transcriptase Polymerase Chain Reaction
Rice
Roots
Seedlings - drug effects
Seedlings - genetics
Seedlings - growth & development
Stress, Physiological - drug effects
Stress, Physiological - genetics
Transcriptome - drug effects
Transcriptome - genetics
Transport Vesicles - drug effects
Transport Vesicles - metabolism
title Comparison of early transcriptome responses to copper and cadmium in rice roots
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