Prediction of transcribed PIWI-interacting RNAs from CHO RNAseq data

•We found 25,626 piRNAs and 540 piRNA clusters in CHO cells.•We show that the piRNA expression pattern is influenced by the presence or the absence of serum in the medium.•Sequence data were submitted to Genbank. Chinese hamster ovary (CHO) cells are currently the most important mammalian host for t...

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Veröffentlicht in:	Journal of biotechnology 2013-06, Vol.166 (1-2), p.51-57
Hauptverfasser:	Gerstl, Matthias Peter, Hackl, Matthias, Graf, Alexandra Bettina, Borth, Nicole, Grillari, Johannes
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms animal ovaries Animals biopharmaceuticals Biotechnology Chinese hamster ovary cells Chinese hamsters CHO Cells Computational Biology - methods Cricetinae Cricetulus data collection Data Interpretation, Statistical Databases, Genetic Derivatives engineering Forecasting Gene sequencing Genetics genome Genomes Integrity manufacturing non-coding RNA Piwi interacting RNA (piRNA) prediction Recombinant Repressing Ribonucleic acids RNA interference RNA, Small Interfering - genetics Sequence Analysis, RNA - methods Transcription, Genetic - physiology transposons
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