The Peptaibiotics Database - A Comprehensive Online Resource
In this work, we present the ‘Peptaibiotics Database’ (PDB), a comprehensive online resource, which intends to cover all Aib‐containing non‐ribosomal fungal peptides currently described in scientific literature. This database shall extend and update the recently published ‘Comprehensive Peptaibiotic...
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| Veröffentlicht in: | Chemistry & biodiversity 2015-05, Vol.12 (5), p.743-751 |
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| container_title | Chemistry & biodiversity |
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| creator | Neumann, Nora K. N. Stoppacher, Norbert Zeilinger, Susanne Degenkolb, Thomas Brückner, Hans Schuhmacher, Rainer |
| description | In this work, we present the ‘Peptaibiotics Database’ (PDB), a comprehensive online resource, which intends to cover all Aib‐containing non‐ribosomal fungal peptides currently described in scientific literature. This database shall extend and update the recently published ‘Comprehensive Peptaibiotics Database’ and currently consists of 1,297 peptaibiotic sequences. In a literature survey, a total of 235 peptaibiotic sequences published between January 2013 and June 2014 have been compiled, and added to the list of 1,062 peptides in the recently published ‘Comprehensive Peptaibiotics Database’.
The presented database is intended as a public resource freely accessible to the scientific community at peptaibiotics‐database.boku.ac.at. The search options of the previously published repository and the presentation of sequence motif searches have been extended significantly. All of the available search options can be combined to create complex database queries. As a public repository, the presented database enables the easy upload of new peptaibiotic sequences or the correction of existing informations. In addition, an administrative interface for maintenance of the content of the database has been implemented, and the design of the database can be easily extended to store additional information to accommodate future needs of the ‘peptaibiomics community’. |
| doi_str_mv | 10.1002/cbdv.201400393 |
| format | Article |
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The presented database is intended as a public resource freely accessible to the scientific community at peptaibiotics‐database.boku.ac.at. The search options of the previously published repository and the presentation of sequence motif searches have been extended significantly. All of the available search options can be combined to create complex database queries. As a public repository, the presented database enables the easy upload of new peptaibiotic sequences or the correction of existing informations. In addition, an administrative interface for maintenance of the content of the database has been implemented, and the design of the database can be easily extended to store additional information to accommodate future needs of the ‘peptaibiomics community’.</description><identifier>ISSN: 1612-1872</identifier><identifier>EISSN: 1612-1880</identifier><identifier>DOI: 10.1002/cbdv.201400393</identifier><identifier>PMID: 26010663</identifier><language>eng</language><publisher>Zürich: WILEY-VCH Verlag</publisher><subject>Anti-Bacterial Agents - chemistry ; Databases, Factual ; Internet ; Internet resources ; Non-ribosomal peptides ; Online databases ; Peptaibols ; Peptide antibiotics ; Peptides ; Peptides - chemistry</subject><ispartof>Chemistry & biodiversity, 2015-05, Vol.12 (5), p.743-751</ispartof><rights>Copyright © 2015 Verlag Helvetica Chimica Acta AG, Zürich</rights><rights>Copyright © 2015 Verlag Helvetica Chimica Acta AG, Zürich.</rights><rights>Copyright © 2015 Verlag Helvetica Chimica Acta AG, Zurich</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4113-19a30ecd114435b1cadb621afdb3e4031b689e66675067f113e0d90f1f09b84c3</citedby><cites>FETCH-LOGICAL-c4113-19a30ecd114435b1cadb621afdb3e4031b689e66675067f113e0d90f1f09b84c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fcbdv.201400393$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fcbdv.201400393$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26010663$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Neumann, Nora K. N.</creatorcontrib><creatorcontrib>Stoppacher, Norbert</creatorcontrib><creatorcontrib>Zeilinger, Susanne</creatorcontrib><creatorcontrib>Degenkolb, Thomas</creatorcontrib><creatorcontrib>Brückner, Hans</creatorcontrib><creatorcontrib>Schuhmacher, Rainer</creatorcontrib><title>The Peptaibiotics Database - A Comprehensive Online Resource</title><title>Chemistry & biodiversity</title><addtitle>Chemistry & Biodiversity</addtitle><description>In this work, we present the ‘Peptaibiotics Database’ (PDB), a comprehensive online resource, which intends to cover all Aib‐containing non‐ribosomal fungal peptides currently described in scientific literature. This database shall extend and update the recently published ‘Comprehensive Peptaibiotics Database’ and currently consists of 1,297 peptaibiotic sequences. In a literature survey, a total of 235 peptaibiotic sequences published between January 2013 and June 2014 have been compiled, and added to the list of 1,062 peptides in the recently published ‘Comprehensive Peptaibiotics Database’.
The presented database is intended as a public resource freely accessible to the scientific community at peptaibiotics‐database.boku.ac.at. The search options of the previously published repository and the presentation of sequence motif searches have been extended significantly. All of the available search options can be combined to create complex database queries. As a public repository, the presented database enables the easy upload of new peptaibiotic sequences or the correction of existing informations. 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N.</creatorcontrib><creatorcontrib>Stoppacher, Norbert</creatorcontrib><creatorcontrib>Zeilinger, Susanne</creatorcontrib><creatorcontrib>Degenkolb, Thomas</creatorcontrib><creatorcontrib>Brückner, Hans</creatorcontrib><creatorcontrib>Schuhmacher, Rainer</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Chemistry & biodiversity</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Neumann, Nora K. N.</au><au>Stoppacher, Norbert</au><au>Zeilinger, Susanne</au><au>Degenkolb, Thomas</au><au>Brückner, Hans</au><au>Schuhmacher, Rainer</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The Peptaibiotics Database - A Comprehensive Online Resource</atitle><jtitle>Chemistry & biodiversity</jtitle><addtitle>Chemistry & Biodiversity</addtitle><date>2015-05</date><risdate>2015</risdate><volume>12</volume><issue>5</issue><spage>743</spage><epage>751</epage><pages>743-751</pages><issn>1612-1872</issn><eissn>1612-1880</eissn><abstract>In this work, we present the ‘Peptaibiotics Database’ (PDB), a comprehensive online resource, which intends to cover all Aib‐containing non‐ribosomal fungal peptides currently described in scientific literature. This database shall extend and update the recently published ‘Comprehensive Peptaibiotics Database’ and currently consists of 1,297 peptaibiotic sequences. In a literature survey, a total of 235 peptaibiotic sequences published between January 2013 and June 2014 have been compiled, and added to the list of 1,062 peptides in the recently published ‘Comprehensive Peptaibiotics Database’.
The presented database is intended as a public resource freely accessible to the scientific community at peptaibiotics‐database.boku.ac.at. The search options of the previously published repository and the presentation of sequence motif searches have been extended significantly. All of the available search options can be combined to create complex database queries. As a public repository, the presented database enables the easy upload of new peptaibiotic sequences or the correction of existing informations. In addition, an administrative interface for maintenance of the content of the database has been implemented, and the design of the database can be easily extended to store additional information to accommodate future needs of the ‘peptaibiomics community’.</abstract><cop>Zürich</cop><pub>WILEY-VCH Verlag</pub><pmid>26010663</pmid><doi>10.1002/cbdv.201400393</doi><tpages>9</tpages></addata></record> |
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| source | MEDLINE; Wiley Online Library Journals Frontfile Complete |
| subjects | Anti-Bacterial Agents - chemistry Databases, Factual Internet Internet resources Non-ribosomal peptides Online databases Peptaibols Peptide antibiotics Peptides Peptides - chemistry |
| title | The Peptaibiotics Database - A Comprehensive Online Resource |
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