Ocean plankton. Structure and function of the global ocean microbiome
Microbes are dominant drivers of biogeochemical processes, yet drawing a global picture of functional diversity, microbial community structure, and their ecological determinants remains a grand challenge. We analyzed 7.2 terabases of metagenomic data from 243 Tara Oceans samples from 68 locations in...
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| Veröffentlicht in: | Science (American Association for the Advancement of Science) 2015-05, Vol.348 (6237), p.1261359-1261359 |
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| creator | Sunagawa, Shinichi Coelho, Luis Pedro Chaffron, Samuel Kultima, Jens Roat Labadie, Karine Salazar, Guillem Djahanschiri, Bardya Zeller, Georg Mende, Daniel R Alberti, Adriana Cornejo-Castillo, Francisco M Costea, Paul I Cruaud, Corinne d'Ovidio, Francesco Engelen, Stefan Ferrera, Isabel Gasol, Josep M Guidi, Lionel Hildebrand, Falk Kokoszka, Florian Lepoivre, Cyrille Lima-Mendez, Gipsi Poulain, Julie Poulos, Bonnie T Royo-Llonch, Marta Sarmento, Hugo Vieira-Silva, Sara Dimier, Céline Picheral, Marc Searson, Sarah Kandels-Lewis, Stefanie Bowler, Chris de Vargas, Colomban Gorsky, Gabriel Grimsley, Nigel Hingamp, Pascal Iudicone, Daniele Jaillon, Olivier Not, Fabrice Ogata, Hiroyuki Pesant, Stephane Speich, Sabrina Stemmann, Lars Sullivan, Matthew B Weissenbach, Jean Wincker, Patrick Karsenti, Eric Raes, Jeroen Acinas, Silvia G Bork, Peer |
| description | Microbes are dominant drivers of biogeochemical processes, yet drawing a global picture of functional diversity, microbial community structure, and their ecological determinants remains a grand challenge. We analyzed 7.2 terabases of metagenomic data from 243 Tara Oceans samples from 68 locations in epipelagic and mesopelagic waters across the globe to generate an ocean microbial reference gene catalog with >40 million nonredundant, mostly novel sequences from viruses, prokaryotes, and picoeukaryotes. Using 139 prokaryote-enriched samples, containing >35,000 species, we show vertical stratification with epipelagic community composition mostly driven by temperature rather than other environmental factors or geography. We identify ocean microbial core functionality and reveal that >73% of its abundance is shared with the human gut microbiome despite the physicochemical differences between these two ecosystems. |
| doi_str_mv | 10.1126/science.1261359 |
| format | Article |
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We identify ocean microbial core functionality and reveal that >73% of its abundance is shared with the human gut microbiome despite the physicochemical differences between these two ecosystems.</description><subject>Databases, Genetic</subject><subject>Ecosystem</subject><subject>Gastrointestinal Tract - microbiology</subject><subject>Genetic Variation</subject><subject>Humans</subject><subject>Metagenome</subject><subject>Microbiota - genetics</subject><subject>Oceans and Seas</subject><subject>Plankton - classification</subject><subject>Plankton - genetics</subject><subject>Plankton - isolation & purification</subject><subject>Seawater - microbiology</subject><issn>1095-9203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo1Tz1PwzAUtJAQLYWZDXlkSbHj2PUbUVU-pEodyh459jMEEjvYycC_J4Iy3Z10d7oj5IazNeelus-2xWBxPXMuJJyRJWcgCyiZWJDLnD8YmzWIC7IoJQBILpZkd7BoAh06Ez7HGNb0OKbJjlNCaoKjfgp2bGOg0dPxHelbFxvT0fgb6lubYtPGHq_IuTddxusTrsjxcfe6fS72h6eX7cO-GKQShQNumo0ueaWYM04rVvlGCCtReaycRe0rZ6yCTePReKMUt5JZhqwCsCBW5O6vdUjxa8I81n2bLXbzdoxTrrnSpQauuZ6ttyfr1PTo6iG1vUnf9f9x8QPH-1oj</recordid><startdate>20150522</startdate><enddate>20150522</enddate><creator>Sunagawa, Shinichi</creator><creator>Coelho, Luis Pedro</creator><creator>Chaffron, Samuel</creator><creator>Kultima, Jens Roat</creator><creator>Labadie, Karine</creator><creator>Salazar, Guillem</creator><creator>Djahanschiri, Bardya</creator><creator>Zeller, Georg</creator><creator>Mende, Daniel R</creator><creator>Alberti, Adriana</creator><creator>Cornejo-Castillo, Francisco M</creator><creator>Costea, Paul I</creator><creator>Cruaud, Corinne</creator><creator>d'Ovidio, Francesco</creator><creator>Engelen, Stefan</creator><creator>Ferrera, Isabel</creator><creator>Gasol, Josep M</creator><creator>Guidi, Lionel</creator><creator>Hildebrand, Falk</creator><creator>Kokoszka, Florian</creator><creator>Lepoivre, Cyrille</creator><creator>Lima-Mendez, Gipsi</creator><creator>Poulain, Julie</creator><creator>Poulos, Bonnie T</creator><creator>Royo-Llonch, Marta</creator><creator>Sarmento, Hugo</creator><creator>Vieira-Silva, Sara</creator><creator>Dimier, Céline</creator><creator>Picheral, Marc</creator><creator>Searson, Sarah</creator><creator>Kandels-Lewis, Stefanie</creator><creator>Bowler, Chris</creator><creator>de Vargas, Colomban</creator><creator>Gorsky, Gabriel</creator><creator>Grimsley, Nigel</creator><creator>Hingamp, Pascal</creator><creator>Iudicone, Daniele</creator><creator>Jaillon, Olivier</creator><creator>Not, Fabrice</creator><creator>Ogata, Hiroyuki</creator><creator>Pesant, Stephane</creator><creator>Speich, Sabrina</creator><creator>Stemmann, Lars</creator><creator>Sullivan, Matthew B</creator><creator>Weissenbach, Jean</creator><creator>Wincker, Patrick</creator><creator>Karsenti, Eric</creator><creator>Raes, Jeroen</creator><creator>Acinas, Silvia G</creator><creator>Bork, Peer</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope></search><sort><creationdate>20150522</creationdate><title>Ocean plankton. 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| subjects | Databases, Genetic Ecosystem Gastrointestinal Tract - microbiology Genetic Variation Humans Metagenome Microbiota - genetics Oceans and Seas Plankton - classification Plankton - genetics Plankton - isolation & purification Seawater - microbiology |
| title | Ocean plankton. Structure and function of the global ocean microbiome |
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