Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.)
Key message Potential novel and known QTL for race-specific all-stage and adult plant resistance to stripe rust were identified by genome-wide association mapping in the US PNW winter wheat accessions. Stripe rust ( Puccinia striiformis F. sp. tritici ; also known as yellow rust) is a globally devas...
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| Veröffentlicht in: | Theoretical and applied genetics 2015-06, Vol.128 (6), p.1083-1101 |
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| creator | Naruoka, Y. Garland-Campbell, K. A. Carter, A. H. |
| description | Key message
Potential novel and known QTL for race-specific all-stage and adult plant resistance to stripe rust were identified by genome-wide association mapping in the US PNW winter wheat accessions.
Stripe rust (
Puccinia striiformis
F. sp.
tritici
; also known as yellow rust) is a globally devastating disease of wheat (
Triticum aestivum
L.) and a major threat to wheat production in the US Pacific Northwest (PNW), therefore both adult plant and all-stage resistance have been introduced into the winter wheat breeding programs in the PNW. The goal of this study was to identify quantitative trait loci (QTL) and molecular markers for these resistances through genome-wide association (GWAS) mapping in winter wheat accessions adapted to the PNW. Stripe rust response for adult plants was evaluated in naturally occurring epidemics in a total of nine environments in Washington State, USA. Seedling response was evaluated with three races under artificial inoculation in the greenhouse. The panel was genotyped with the 9K Illumina Wheat single nucleotide polymorphism (SNP) array and additional markers linked to previously reported genes and QTL for stripe rust resistance. The population was grouped into three sub-populations. Markers linked to
Yr17
and previously reported QTL for stripe rust resistance were identified on chromosomes 1B, 2A, and 2B. Potentially novel QTL associated with race-specific seedling response were identified on chromosomes 1B and 1D. Potentially novel QTL associated with adult plant response were located on chromosomes 2A, 2B, 3B, 4A, and 4B. Stripe rust was reduced when multiple alleles for resistance were present. The resistant allele frequencies were different among sub-populations in the panel. This information provides breeders with germplasm and closely linked markers for stripe rust resistance to facilitate the transfer of multiple loci for durable stripe rust resistance into wheat breeding lines and cultivars. |
| doi_str_mv | 10.1007/s00122-015-2492-2 |
| format | Article |
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Potential novel and known QTL for race-specific all-stage and adult plant resistance to stripe rust were identified by genome-wide association mapping in the US PNW winter wheat accessions.
Stripe rust (
Puccinia striiformis
F. sp.
tritici
; also known as yellow rust) is a globally devastating disease of wheat (
Triticum aestivum
L.) and a major threat to wheat production in the US Pacific Northwest (PNW), therefore both adult plant and all-stage resistance have been introduced into the winter wheat breeding programs in the PNW. The goal of this study was to identify quantitative trait loci (QTL) and molecular markers for these resistances through genome-wide association (GWAS) mapping in winter wheat accessions adapted to the PNW. Stripe rust response for adult plants was evaluated in naturally occurring epidemics in a total of nine environments in Washington State, USA. Seedling response was evaluated with three races under artificial inoculation in the greenhouse. The panel was genotyped with the 9K Illumina Wheat single nucleotide polymorphism (SNP) array and additional markers linked to previously reported genes and QTL for stripe rust resistance. The population was grouped into three sub-populations. Markers linked to
Yr17
and previously reported QTL for stripe rust resistance were identified on chromosomes 1B, 2A, and 2B. Potentially novel QTL associated with race-specific seedling response were identified on chromosomes 1B and 1D. Potentially novel QTL associated with adult plant response were located on chromosomes 2A, 2B, 3B, 4A, and 4B. Stripe rust was reduced when multiple alleles for resistance were present. The resistant allele frequencies were different among sub-populations in the panel. This information provides breeders with germplasm and closely linked markers for stripe rust resistance to facilitate the transfer of multiple loci for durable stripe rust resistance into wheat breeding lines and cultivars.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-015-2492-2</identifier><identifier>PMID: 25754424</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Agriculture ; Basidiomycota ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Breeding ; Chromosome Mapping ; Chromosomes ; Chromosomes, Plant - genetics ; Cultivars ; Disease Resistance - genetics ; Gene Frequency ; Genes ; Genetic Association Studies ; Genetic Markers ; Genomes ; Genotype ; Germplasm ; Infections ; Life Sciences ; Linkage Disequilibrium ; Original Paper ; Pathogens ; Physiology ; Plant Biochemistry ; Plant Breeding/Biotechnology ; Plant Diseases - genetics ; Plant Genetics and Genomics ; Plant resistance ; Polymorphism, Single Nucleotide ; Quantitative Trait Loci ; Soil sciences ; Triticum - genetics ; Triticum - microbiology ; Washington ; Wheat</subject><ispartof>Theoretical and applied genetics, 2015-06, Vol.128 (6), p.1083-1101</ispartof><rights>Springer-Verlag Berlin Heidelberg 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c442t-20db180e8d31cc81e835f3d812af35bfea7a9a54134b52db18b856dc9f1283073</citedby><cites>FETCH-LOGICAL-c442t-20db180e8d31cc81e835f3d812af35bfea7a9a54134b52db18b856dc9f1283073</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00122-015-2492-2$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00122-015-2492-2$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25754424$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Naruoka, Y.</creatorcontrib><creatorcontrib>Garland-Campbell, K. A.</creatorcontrib><creatorcontrib>Carter, A. H.</creatorcontrib><title>Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.)</title><title>Theoretical and applied genetics</title><addtitle>Theor Appl Genet</addtitle><addtitle>Theor Appl Genet</addtitle><description>Key message
Potential novel and known QTL for race-specific all-stage and adult plant resistance to stripe rust were identified by genome-wide association mapping in the US PNW winter wheat accessions.
Stripe rust (
Puccinia striiformis
F. sp.
tritici
; also known as yellow rust) is a globally devastating disease of wheat (
Triticum aestivum
L.) and a major threat to wheat production in the US Pacific Northwest (PNW), therefore both adult plant and all-stage resistance have been introduced into the winter wheat breeding programs in the PNW. The goal of this study was to identify quantitative trait loci (QTL) and molecular markers for these resistances through genome-wide association (GWAS) mapping in winter wheat accessions adapted to the PNW. Stripe rust response for adult plants was evaluated in naturally occurring epidemics in a total of nine environments in Washington State, USA. Seedling response was evaluated with three races under artificial inoculation in the greenhouse. The panel was genotyped with the 9K Illumina Wheat single nucleotide polymorphism (SNP) array and additional markers linked to previously reported genes and QTL for stripe rust resistance. The population was grouped into three sub-populations. Markers linked to
Yr17
and previously reported QTL for stripe rust resistance were identified on chromosomes 1B, 2A, and 2B. Potentially novel QTL associated with race-specific seedling response were identified on chromosomes 1B and 1D. Potentially novel QTL associated with adult plant response were located on chromosomes 2A, 2B, 3B, 4A, and 4B. Stripe rust was reduced when multiple alleles for resistance were present. The resistant allele frequencies were different among sub-populations in the panel. This information provides breeders with germplasm and closely linked markers for stripe rust resistance to facilitate the transfer of multiple loci for durable stripe rust resistance into wheat breeding lines and cultivars.</description><subject>Agriculture</subject><subject>Basidiomycota</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Breeding</subject><subject>Chromosome Mapping</subject><subject>Chromosomes</subject><subject>Chromosomes, Plant - genetics</subject><subject>Cultivars</subject><subject>Disease Resistance - genetics</subject><subject>Gene Frequency</subject><subject>Genes</subject><subject>Genetic Association Studies</subject><subject>Genetic Markers</subject><subject>Genomes</subject><subject>Genotype</subject><subject>Germplasm</subject><subject>Infections</subject><subject>Life Sciences</subject><subject>Linkage Disequilibrium</subject><subject>Original Paper</subject><subject>Pathogens</subject><subject>Physiology</subject><subject>Plant Biochemistry</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Diseases - genetics</subject><subject>Plant Genetics and Genomics</subject><subject>Plant resistance</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Quantitative Trait Loci</subject><subject>Soil sciences</subject><subject>Triticum - genetics</subject><subject>Triticum - microbiology</subject><subject>Washington</subject><subject>Wheat</subject><issn>0040-5752</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp1kcFuEzEQhi1ERUPhAbggS1zawwZ7bCebI6poQYpoJdqz5fV626my9mLvEvUx-sZMkoIQEieP5v_mn7F-xt5JMZdCLD8WISRAJaSpQK-gghdsJrWiAjS8ZDMhtKjM0sAxe13KgxACjFCv2DFQU2vQM_Z0GWLqQ7XFNnBXSvLoRkyR924YMN7xLmVexoxD4HkqIz-9nrzHiG7fRZJ7LPxizssw59QZ0eMZx8hvv_Nr57FDz7-lPN5vA01vMY4h8-19cGR1s8ennjvS8CcV6_nZG3bUuU0Jb5_fE3Z78fnm_Eu1vrr8ev5pXXm6fKxAtI2sRahbJb2vZaiV6VRbS3CdMk0X3NKtnNFS6cbAjm1qs2j9qpNQK7FUJ-z04Dvk9GOiAyx9xIfNxsWQpmLlopYruZCwQz_8gz6kKUe6bk-BMQtQRMkD5XMqJYfODhl7lx-tFHaXlz3kZSkvu8vLAs28f3aemj60fyZ-B0QAHIBCUrwL-a_V_3X9BVE9oDQ</recordid><startdate>20150601</startdate><enddate>20150601</enddate><creator>Naruoka, Y.</creator><creator>Garland-Campbell, K. A.</creator><creator>Carter, A. H.</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20150601</creationdate><title>Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.)</title><author>Naruoka, Y. ; Garland-Campbell, K. A. ; Carter, A. 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A.</creatorcontrib><creatorcontrib>Carter, A. 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A.</au><au>Carter, A. H.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.)</atitle><jtitle>Theoretical and applied genetics</jtitle><stitle>Theor Appl Genet</stitle><addtitle>Theor Appl Genet</addtitle><date>2015-06-01</date><risdate>2015</risdate><volume>128</volume><issue>6</issue><spage>1083</spage><epage>1101</epage><pages>1083-1101</pages><issn>0040-5752</issn><eissn>1432-2242</eissn><abstract>Key message
Potential novel and known QTL for race-specific all-stage and adult plant resistance to stripe rust were identified by genome-wide association mapping in the US PNW winter wheat accessions.
Stripe rust (
Puccinia striiformis
F. sp.
tritici
; also known as yellow rust) is a globally devastating disease of wheat (
Triticum aestivum
L.) and a major threat to wheat production in the US Pacific Northwest (PNW), therefore both adult plant and all-stage resistance have been introduced into the winter wheat breeding programs in the PNW. The goal of this study was to identify quantitative trait loci (QTL) and molecular markers for these resistances through genome-wide association (GWAS) mapping in winter wheat accessions adapted to the PNW. Stripe rust response for adult plants was evaluated in naturally occurring epidemics in a total of nine environments in Washington State, USA. Seedling response was evaluated with three races under artificial inoculation in the greenhouse. The panel was genotyped with the 9K Illumina Wheat single nucleotide polymorphism (SNP) array and additional markers linked to previously reported genes and QTL for stripe rust resistance. The population was grouped into three sub-populations. Markers linked to
Yr17
and previously reported QTL for stripe rust resistance were identified on chromosomes 1B, 2A, and 2B. Potentially novel QTL associated with race-specific seedling response were identified on chromosomes 1B and 1D. Potentially novel QTL associated with adult plant response were located on chromosomes 2A, 2B, 3B, 4A, and 4B. Stripe rust was reduced when multiple alleles for resistance were present. The resistant allele frequencies were different among sub-populations in the panel. This information provides breeders with germplasm and closely linked markers for stripe rust resistance to facilitate the transfer of multiple loci for durable stripe rust resistance into wheat breeding lines and cultivars.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>25754424</pmid><doi>10.1007/s00122-015-2492-2</doi><tpages>19</tpages></addata></record> |
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| ispartof | Theoretical and applied genetics, 2015-06, Vol.128 (6), p.1083-1101 |
| issn | 0040-5752 1432-2242 |
| language | eng |
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| source | MEDLINE; Springer Nature - Complete Springer Journals |
| subjects | Agriculture Basidiomycota Biochemistry Biomedical and Life Sciences Biotechnology Breeding Chromosome Mapping Chromosomes Chromosomes, Plant - genetics Cultivars Disease Resistance - genetics Gene Frequency Genes Genetic Association Studies Genetic Markers Genomes Genotype Germplasm Infections Life Sciences Linkage Disequilibrium Original Paper Pathogens Physiology Plant Biochemistry Plant Breeding/Biotechnology Plant Diseases - genetics Plant Genetics and Genomics Plant resistance Polymorphism, Single Nucleotide Quantitative Trait Loci Soil sciences Triticum - genetics Triticum - microbiology Washington Wheat |
| title | Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.) |
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