Effects of osmolytes on arginine kinase from Euphausia superba: A study on thermal denaturation and aggregation
•Arginine kinase (AK) thermal folding mechanisms.•ORF sequence of AK from E. superba probing by RACE and computational simulations by using its gene sequence.•Comparisons between conformational changes and catalytic functions of AK during thermal denaturation.•Osmolytes roles for preventing AK aggre...
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Veröffentlicht in: | Process biochemistry (1991) 2014-06, Vol.49 (6), p.936-947 |
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container_title | Process biochemistry (1991) |
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creator | Fang, Nai-Yun Lee, Jinhyuk Yin, Shang-Jun Wang, Wei Wang, Zhi-Jiang Yang, Jun-Mo Qian, Guo-Ying Si, Yue-Xiu Park, Yong-Doo |
description | •Arginine kinase (AK) thermal folding mechanisms.•ORF sequence of AK from E. superba probing by RACE and computational simulations by using its gene sequence.•Comparisons between conformational changes and catalytic functions of AK during thermal denaturation.•Osmolytes roles for preventing AK aggregation and binding mechanisms predicted by docking simulations.
Investigations of energy-related enzymatic properties may provide valuable information about the mechanisms that are involved in the adaptation to extreme climatic environments. The protective effects of osmolytes on the thermal denaturation and aggregation of arginine kinase from E. superba (ESAK) was investigated. When the concentration of glycine, proline and glycerol increased, the relative activation was significantly enhanced, while the aggregation of ESAK during thermal denaturation was decreased. Spectrofluorometry results showed that the presence of these three osmolytes significantly decreased the tertiary structural changes of ESAK and that thermal denaturation directly induced ESAK aggregation. The results demonstrated that glycine, proline and glycerol not only prevented ESAK from inactivation and unfolding but also inhibited aggregation by stabilizing the ESAK conformation. We measured the ORF gene sequence of ESAK by RACE, and built the 3D structure of ESAK and osmolytes by homology models. The results showed that the docking energy was relatively low and that the clustering groups were spread to the surface of ESAK, indicating that osmolytes directly protect the surface of the protein. Our study provides important insight into the protective effects of osmolytes on ESAK folding. |
doi_str_mv | 10.1016/j.procbio.2014.03.019 |
format | Article |
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Investigations of energy-related enzymatic properties may provide valuable information about the mechanisms that are involved in the adaptation to extreme climatic environments. The protective effects of osmolytes on the thermal denaturation and aggregation of arginine kinase from E. superba (ESAK) was investigated. When the concentration of glycine, proline and glycerol increased, the relative activation was significantly enhanced, while the aggregation of ESAK during thermal denaturation was decreased. Spectrofluorometry results showed that the presence of these three osmolytes significantly decreased the tertiary structural changes of ESAK and that thermal denaturation directly induced ESAK aggregation. The results demonstrated that glycine, proline and glycerol not only prevented ESAK from inactivation and unfolding but also inhibited aggregation by stabilizing the ESAK conformation. We measured the ORF gene sequence of ESAK by RACE, and built the 3D structure of ESAK and osmolytes by homology models. The results showed that the docking energy was relatively low and that the clustering groups were spread to the surface of ESAK, indicating that osmolytes directly protect the surface of the protein. Our study provides important insight into the protective effects of osmolytes on ESAK folding.</description><identifier>ISSN: 1359-5113</identifier><identifier>EISSN: 1873-3298</identifier><identifier>DOI: 10.1016/j.procbio.2014.03.019</identifier><language>eng</language><publisher>Elsevier Ltd</publisher><subject>Agglomeration ; Arginine kinase ; Docking simulations ; Euphausia superba ; Glycerols ; Glycine ; Kinases ; Osmolytes ; Proline ; Protective ; RACE ; Thermal denaturation ; Three dimensional</subject><ispartof>Process biochemistry (1991), 2014-06, Vol.49 (6), p.936-947</ispartof><rights>2014 Elsevier Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c412t-cc79533246d05475c9c1c6966aa04dbf3720b66fdd4e01585b047f4776893b393</citedby><cites>FETCH-LOGICAL-c412t-cc79533246d05475c9c1c6966aa04dbf3720b66fdd4e01585b047f4776893b393</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.procbio.2014.03.019$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,777,781,3537,27905,27906,45976</link.rule.ids></links><search><creatorcontrib>Fang, Nai-Yun</creatorcontrib><creatorcontrib>Lee, Jinhyuk</creatorcontrib><creatorcontrib>Yin, Shang-Jun</creatorcontrib><creatorcontrib>Wang, Wei</creatorcontrib><creatorcontrib>Wang, Zhi-Jiang</creatorcontrib><creatorcontrib>Yang, Jun-Mo</creatorcontrib><creatorcontrib>Qian, Guo-Ying</creatorcontrib><creatorcontrib>Si, Yue-Xiu</creatorcontrib><creatorcontrib>Park, Yong-Doo</creatorcontrib><title>Effects of osmolytes on arginine kinase from Euphausia superba: A study on thermal denaturation and aggregation</title><title>Process biochemistry (1991)</title><description>•Arginine kinase (AK) thermal folding mechanisms.•ORF sequence of AK from E. superba probing by RACE and computational simulations by using its gene sequence.•Comparisons between conformational changes and catalytic functions of AK during thermal denaturation.•Osmolytes roles for preventing AK aggregation and binding mechanisms predicted by docking simulations.
Investigations of energy-related enzymatic properties may provide valuable information about the mechanisms that are involved in the adaptation to extreme climatic environments. The protective effects of osmolytes on the thermal denaturation and aggregation of arginine kinase from E. superba (ESAK) was investigated. When the concentration of glycine, proline and glycerol increased, the relative activation was significantly enhanced, while the aggregation of ESAK during thermal denaturation was decreased. Spectrofluorometry results showed that the presence of these three osmolytes significantly decreased the tertiary structural changes of ESAK and that thermal denaturation directly induced ESAK aggregation. The results demonstrated that glycine, proline and glycerol not only prevented ESAK from inactivation and unfolding but also inhibited aggregation by stabilizing the ESAK conformation. We measured the ORF gene sequence of ESAK by RACE, and built the 3D structure of ESAK and osmolytes by homology models. The results showed that the docking energy was relatively low and that the clustering groups were spread to the surface of ESAK, indicating that osmolytes directly protect the surface of the protein. Our study provides important insight into the protective effects of osmolytes on ESAK folding.</description><subject>Agglomeration</subject><subject>Arginine kinase</subject><subject>Docking simulations</subject><subject>Euphausia superba</subject><subject>Glycerols</subject><subject>Glycine</subject><subject>Kinases</subject><subject>Osmolytes</subject><subject>Proline</subject><subject>Protective</subject><subject>RACE</subject><subject>Thermal denaturation</subject><subject>Three dimensional</subject><issn>1359-5113</issn><issn>1873-3298</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><recordid>eNqFkU9r3DAQxU1ooWnaj1DQsRe7GuvfqpcQwrYNBHJJzkKWRhttbGsr2YH99tV2c89pZuC9B_N-TfMNaAcU5I99d8jJDTF1PQXeUdZR0BfNJWwUa1mvNx_qzoRuBQD71HwuZU8pAwB62aRtCOiWQlIgqUxpPC5Yj5nYvItznJG8xNkWJCGniWzXw7NdS7SkrAfMg_1JbkhZVn88WZZnzJMdicfZLmu2SzzlzJ7Y3S7j7v_9pfkY7Fjw69u8ap5-bR9v_7T3D7_vbm_uW8ehX1rnlBaM9Vx6KrgSTjtwUktpLeV-CEz1dJAyeM-RgtiIgXIVuFJyo9nANLtqvp9zazV_VyyLmWJxOI52xrQWA1IprTitRbwrFZICSNCsSsVZ6nIqJWMwhxwnm48GqDmxMHvzxsKcWBjKTGVRfddnH9aXXyNmU1zE2aGPubZvfIrvJPwDIhaVhw</recordid><startdate>20140601</startdate><enddate>20140601</enddate><creator>Fang, Nai-Yun</creator><creator>Lee, Jinhyuk</creator><creator>Yin, Shang-Jun</creator><creator>Wang, Wei</creator><creator>Wang, Zhi-Jiang</creator><creator>Yang, Jun-Mo</creator><creator>Qian, Guo-Ying</creator><creator>Si, Yue-Xiu</creator><creator>Park, Yong-Doo</creator><general>Elsevier Ltd</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>7SU</scope><scope>7U5</scope><scope>C1K</scope><scope>F28</scope><scope>L7M</scope></search><sort><creationdate>20140601</creationdate><title>Effects of osmolytes on arginine kinase from Euphausia superba: A study on thermal denaturation and aggregation</title><author>Fang, Nai-Yun ; Lee, Jinhyuk ; Yin, Shang-Jun ; Wang, Wei ; Wang, Zhi-Jiang ; Yang, Jun-Mo ; Qian, Guo-Ying ; Si, Yue-Xiu ; Park, Yong-Doo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c412t-cc79533246d05475c9c1c6966aa04dbf3720b66fdd4e01585b047f4776893b393</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Agglomeration</topic><topic>Arginine kinase</topic><topic>Docking simulations</topic><topic>Euphausia superba</topic><topic>Glycerols</topic><topic>Glycine</topic><topic>Kinases</topic><topic>Osmolytes</topic><topic>Proline</topic><topic>Protective</topic><topic>RACE</topic><topic>Thermal denaturation</topic><topic>Three dimensional</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fang, Nai-Yun</creatorcontrib><creatorcontrib>Lee, Jinhyuk</creatorcontrib><creatorcontrib>Yin, Shang-Jun</creatorcontrib><creatorcontrib>Wang, Wei</creatorcontrib><creatorcontrib>Wang, Zhi-Jiang</creatorcontrib><creatorcontrib>Yang, Jun-Mo</creatorcontrib><creatorcontrib>Qian, Guo-Ying</creatorcontrib><creatorcontrib>Si, Yue-Xiu</creatorcontrib><creatorcontrib>Park, Yong-Doo</creatorcontrib><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Advanced Technologies Database with Aerospace</collection><jtitle>Process biochemistry (1991)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fang, Nai-Yun</au><au>Lee, Jinhyuk</au><au>Yin, Shang-Jun</au><au>Wang, Wei</au><au>Wang, Zhi-Jiang</au><au>Yang, Jun-Mo</au><au>Qian, Guo-Ying</au><au>Si, Yue-Xiu</au><au>Park, Yong-Doo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Effects of osmolytes on arginine kinase from Euphausia superba: A study on thermal denaturation and aggregation</atitle><jtitle>Process biochemistry (1991)</jtitle><date>2014-06-01</date><risdate>2014</risdate><volume>49</volume><issue>6</issue><spage>936</spage><epage>947</epage><pages>936-947</pages><issn>1359-5113</issn><eissn>1873-3298</eissn><abstract>•Arginine kinase (AK) thermal folding mechanisms.•ORF sequence of AK from E. superba probing by RACE and computational simulations by using its gene sequence.•Comparisons between conformational changes and catalytic functions of AK during thermal denaturation.•Osmolytes roles for preventing AK aggregation and binding mechanisms predicted by docking simulations.
Investigations of energy-related enzymatic properties may provide valuable information about the mechanisms that are involved in the adaptation to extreme climatic environments. The protective effects of osmolytes on the thermal denaturation and aggregation of arginine kinase from E. superba (ESAK) was investigated. When the concentration of glycine, proline and glycerol increased, the relative activation was significantly enhanced, while the aggregation of ESAK during thermal denaturation was decreased. Spectrofluorometry results showed that the presence of these three osmolytes significantly decreased the tertiary structural changes of ESAK and that thermal denaturation directly induced ESAK aggregation. The results demonstrated that glycine, proline and glycerol not only prevented ESAK from inactivation and unfolding but also inhibited aggregation by stabilizing the ESAK conformation. We measured the ORF gene sequence of ESAK by RACE, and built the 3D structure of ESAK and osmolytes by homology models. The results showed that the docking energy was relatively low and that the clustering groups were spread to the surface of ESAK, indicating that osmolytes directly protect the surface of the protein. Our study provides important insight into the protective effects of osmolytes on ESAK folding.</abstract><pub>Elsevier Ltd</pub><doi>10.1016/j.procbio.2014.03.019</doi><tpages>12</tpages></addata></record> |
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subjects | Agglomeration Arginine kinase Docking simulations Euphausia superba Glycerols Glycine Kinases Osmolytes Proline Protective RACE Thermal denaturation Three dimensional |
title | Effects of osmolytes on arginine kinase from Euphausia superba: A study on thermal denaturation and aggregation |
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