Effects of osmolytes on arginine kinase from Euphausia superba: A study on thermal denaturation and aggregation

•Arginine kinase (AK) thermal folding mechanisms.•ORF sequence of AK from E. superba probing by RACE and computational simulations by using its gene sequence.•Comparisons between conformational changes and catalytic functions of AK during thermal denaturation.•Osmolytes roles for preventing AK aggre...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Process biochemistry (1991) 2014-06, Vol.49 (6), p.936-947
Hauptverfasser: Fang, Nai-Yun, Lee, Jinhyuk, Yin, Shang-Jun, Wang, Wei, Wang, Zhi-Jiang, Yang, Jun-Mo, Qian, Guo-Ying, Si, Yue-Xiu, Park, Yong-Doo
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 947
container_issue 6
container_start_page 936
container_title Process biochemistry (1991)
container_volume 49
creator Fang, Nai-Yun
Lee, Jinhyuk
Yin, Shang-Jun
Wang, Wei
Wang, Zhi-Jiang
Yang, Jun-Mo
Qian, Guo-Ying
Si, Yue-Xiu
Park, Yong-Doo
description •Arginine kinase (AK) thermal folding mechanisms.•ORF sequence of AK from E. superba probing by RACE and computational simulations by using its gene sequence.•Comparisons between conformational changes and catalytic functions of AK during thermal denaturation.•Osmolytes roles for preventing AK aggregation and binding mechanisms predicted by docking simulations. Investigations of energy-related enzymatic properties may provide valuable information about the mechanisms that are involved in the adaptation to extreme climatic environments. The protective effects of osmolytes on the thermal denaturation and aggregation of arginine kinase from E. superba (ESAK) was investigated. When the concentration of glycine, proline and glycerol increased, the relative activation was significantly enhanced, while the aggregation of ESAK during thermal denaturation was decreased. Spectrofluorometry results showed that the presence of these three osmolytes significantly decreased the tertiary structural changes of ESAK and that thermal denaturation directly induced ESAK aggregation. The results demonstrated that glycine, proline and glycerol not only prevented ESAK from inactivation and unfolding but also inhibited aggregation by stabilizing the ESAK conformation. We measured the ORF gene sequence of ESAK by RACE, and built the 3D structure of ESAK and osmolytes by homology models. The results showed that the docking energy was relatively low and that the clustering groups were spread to the surface of ESAK, indicating that osmolytes directly protect the surface of the protein. Our study provides important insight into the protective effects of osmolytes on ESAK folding.
doi_str_mv 10.1016/j.procbio.2014.03.019
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1677974000</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S1359511314001834</els_id><sourcerecordid>1677974000</sourcerecordid><originalsourceid>FETCH-LOGICAL-c412t-cc79533246d05475c9c1c6966aa04dbf3720b66fdd4e01585b047f4776893b393</originalsourceid><addsrcrecordid>eNqFkU9r3DAQxU1ooWnaj1DQsRe7GuvfqpcQwrYNBHJJzkKWRhttbGsr2YH99tV2c89pZuC9B_N-TfMNaAcU5I99d8jJDTF1PQXeUdZR0BfNJWwUa1mvNx_qzoRuBQD71HwuZU8pAwB62aRtCOiWQlIgqUxpPC5Yj5nYvItznJG8xNkWJCGniWzXw7NdS7SkrAfMg_1JbkhZVn88WZZnzJMdicfZLmu2SzzlzJ7Y3S7j7v_9pfkY7Fjw69u8ap5-bR9v_7T3D7_vbm_uW8ehX1rnlBaM9Vx6KrgSTjtwUktpLeV-CEz1dJAyeM-RgtiIgXIVuFJyo9nANLtqvp9zazV_VyyLmWJxOI52xrQWA1IprTitRbwrFZICSNCsSsVZ6nIqJWMwhxwnm48GqDmxMHvzxsKcWBjKTGVRfddnH9aXXyNmU1zE2aGPubZvfIrvJPwDIhaVhw</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1560116193</pqid></control><display><type>article</type><title>Effects of osmolytes on arginine kinase from Euphausia superba: A study on thermal denaturation and aggregation</title><source>Elsevier ScienceDirect Journals</source><creator>Fang, Nai-Yun ; Lee, Jinhyuk ; Yin, Shang-Jun ; Wang, Wei ; Wang, Zhi-Jiang ; Yang, Jun-Mo ; Qian, Guo-Ying ; Si, Yue-Xiu ; Park, Yong-Doo</creator><creatorcontrib>Fang, Nai-Yun ; Lee, Jinhyuk ; Yin, Shang-Jun ; Wang, Wei ; Wang, Zhi-Jiang ; Yang, Jun-Mo ; Qian, Guo-Ying ; Si, Yue-Xiu ; Park, Yong-Doo</creatorcontrib><description>•Arginine kinase (AK) thermal folding mechanisms.•ORF sequence of AK from E. superba probing by RACE and computational simulations by using its gene sequence.•Comparisons between conformational changes and catalytic functions of AK during thermal denaturation.•Osmolytes roles for preventing AK aggregation and binding mechanisms predicted by docking simulations. Investigations of energy-related enzymatic properties may provide valuable information about the mechanisms that are involved in the adaptation to extreme climatic environments. The protective effects of osmolytes on the thermal denaturation and aggregation of arginine kinase from E. superba (ESAK) was investigated. When the concentration of glycine, proline and glycerol increased, the relative activation was significantly enhanced, while the aggregation of ESAK during thermal denaturation was decreased. Spectrofluorometry results showed that the presence of these three osmolytes significantly decreased the tertiary structural changes of ESAK and that thermal denaturation directly induced ESAK aggregation. The results demonstrated that glycine, proline and glycerol not only prevented ESAK from inactivation and unfolding but also inhibited aggregation by stabilizing the ESAK conformation. We measured the ORF gene sequence of ESAK by RACE, and built the 3D structure of ESAK and osmolytes by homology models. The results showed that the docking energy was relatively low and that the clustering groups were spread to the surface of ESAK, indicating that osmolytes directly protect the surface of the protein. Our study provides important insight into the protective effects of osmolytes on ESAK folding.</description><identifier>ISSN: 1359-5113</identifier><identifier>EISSN: 1873-3298</identifier><identifier>DOI: 10.1016/j.procbio.2014.03.019</identifier><language>eng</language><publisher>Elsevier Ltd</publisher><subject>Agglomeration ; Arginine kinase ; Docking simulations ; Euphausia superba ; Glycerols ; Glycine ; Kinases ; Osmolytes ; Proline ; Protective ; RACE ; Thermal denaturation ; Three dimensional</subject><ispartof>Process biochemistry (1991), 2014-06, Vol.49 (6), p.936-947</ispartof><rights>2014 Elsevier Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c412t-cc79533246d05475c9c1c6966aa04dbf3720b66fdd4e01585b047f4776893b393</citedby><cites>FETCH-LOGICAL-c412t-cc79533246d05475c9c1c6966aa04dbf3720b66fdd4e01585b047f4776893b393</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.procbio.2014.03.019$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,777,781,3537,27905,27906,45976</link.rule.ids></links><search><creatorcontrib>Fang, Nai-Yun</creatorcontrib><creatorcontrib>Lee, Jinhyuk</creatorcontrib><creatorcontrib>Yin, Shang-Jun</creatorcontrib><creatorcontrib>Wang, Wei</creatorcontrib><creatorcontrib>Wang, Zhi-Jiang</creatorcontrib><creatorcontrib>Yang, Jun-Mo</creatorcontrib><creatorcontrib>Qian, Guo-Ying</creatorcontrib><creatorcontrib>Si, Yue-Xiu</creatorcontrib><creatorcontrib>Park, Yong-Doo</creatorcontrib><title>Effects of osmolytes on arginine kinase from Euphausia superba: A study on thermal denaturation and aggregation</title><title>Process biochemistry (1991)</title><description>•Arginine kinase (AK) thermal folding mechanisms.•ORF sequence of AK from E. superba probing by RACE and computational simulations by using its gene sequence.•Comparisons between conformational changes and catalytic functions of AK during thermal denaturation.•Osmolytes roles for preventing AK aggregation and binding mechanisms predicted by docking simulations. Investigations of energy-related enzymatic properties may provide valuable information about the mechanisms that are involved in the adaptation to extreme climatic environments. The protective effects of osmolytes on the thermal denaturation and aggregation of arginine kinase from E. superba (ESAK) was investigated. When the concentration of glycine, proline and glycerol increased, the relative activation was significantly enhanced, while the aggregation of ESAK during thermal denaturation was decreased. Spectrofluorometry results showed that the presence of these three osmolytes significantly decreased the tertiary structural changes of ESAK and that thermal denaturation directly induced ESAK aggregation. The results demonstrated that glycine, proline and glycerol not only prevented ESAK from inactivation and unfolding but also inhibited aggregation by stabilizing the ESAK conformation. We measured the ORF gene sequence of ESAK by RACE, and built the 3D structure of ESAK and osmolytes by homology models. The results showed that the docking energy was relatively low and that the clustering groups were spread to the surface of ESAK, indicating that osmolytes directly protect the surface of the protein. Our study provides important insight into the protective effects of osmolytes on ESAK folding.</description><subject>Agglomeration</subject><subject>Arginine kinase</subject><subject>Docking simulations</subject><subject>Euphausia superba</subject><subject>Glycerols</subject><subject>Glycine</subject><subject>Kinases</subject><subject>Osmolytes</subject><subject>Proline</subject><subject>Protective</subject><subject>RACE</subject><subject>Thermal denaturation</subject><subject>Three dimensional</subject><issn>1359-5113</issn><issn>1873-3298</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><recordid>eNqFkU9r3DAQxU1ooWnaj1DQsRe7GuvfqpcQwrYNBHJJzkKWRhttbGsr2YH99tV2c89pZuC9B_N-TfMNaAcU5I99d8jJDTF1PQXeUdZR0BfNJWwUa1mvNx_qzoRuBQD71HwuZU8pAwB62aRtCOiWQlIgqUxpPC5Yj5nYvItznJG8xNkWJCGniWzXw7NdS7SkrAfMg_1JbkhZVn88WZZnzJMdicfZLmu2SzzlzJ7Y3S7j7v_9pfkY7Fjw69u8ap5-bR9v_7T3D7_vbm_uW8ehX1rnlBaM9Vx6KrgSTjtwUktpLeV-CEz1dJAyeM-RgtiIgXIVuFJyo9nANLtqvp9zazV_VyyLmWJxOI52xrQWA1IprTitRbwrFZICSNCsSsVZ6nIqJWMwhxwnm48GqDmxMHvzxsKcWBjKTGVRfddnH9aXXyNmU1zE2aGPubZvfIrvJPwDIhaVhw</recordid><startdate>20140601</startdate><enddate>20140601</enddate><creator>Fang, Nai-Yun</creator><creator>Lee, Jinhyuk</creator><creator>Yin, Shang-Jun</creator><creator>Wang, Wei</creator><creator>Wang, Zhi-Jiang</creator><creator>Yang, Jun-Mo</creator><creator>Qian, Guo-Ying</creator><creator>Si, Yue-Xiu</creator><creator>Park, Yong-Doo</creator><general>Elsevier Ltd</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>7SU</scope><scope>7U5</scope><scope>C1K</scope><scope>F28</scope><scope>L7M</scope></search><sort><creationdate>20140601</creationdate><title>Effects of osmolytes on arginine kinase from Euphausia superba: A study on thermal denaturation and aggregation</title><author>Fang, Nai-Yun ; Lee, Jinhyuk ; Yin, Shang-Jun ; Wang, Wei ; Wang, Zhi-Jiang ; Yang, Jun-Mo ; Qian, Guo-Ying ; Si, Yue-Xiu ; Park, Yong-Doo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c412t-cc79533246d05475c9c1c6966aa04dbf3720b66fdd4e01585b047f4776893b393</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Agglomeration</topic><topic>Arginine kinase</topic><topic>Docking simulations</topic><topic>Euphausia superba</topic><topic>Glycerols</topic><topic>Glycine</topic><topic>Kinases</topic><topic>Osmolytes</topic><topic>Proline</topic><topic>Protective</topic><topic>RACE</topic><topic>Thermal denaturation</topic><topic>Three dimensional</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fang, Nai-Yun</creatorcontrib><creatorcontrib>Lee, Jinhyuk</creatorcontrib><creatorcontrib>Yin, Shang-Jun</creatorcontrib><creatorcontrib>Wang, Wei</creatorcontrib><creatorcontrib>Wang, Zhi-Jiang</creatorcontrib><creatorcontrib>Yang, Jun-Mo</creatorcontrib><creatorcontrib>Qian, Guo-Ying</creatorcontrib><creatorcontrib>Si, Yue-Xiu</creatorcontrib><creatorcontrib>Park, Yong-Doo</creatorcontrib><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ANTE: Abstracts in New Technology &amp; Engineering</collection><collection>Advanced Technologies Database with Aerospace</collection><jtitle>Process biochemistry (1991)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fang, Nai-Yun</au><au>Lee, Jinhyuk</au><au>Yin, Shang-Jun</au><au>Wang, Wei</au><au>Wang, Zhi-Jiang</au><au>Yang, Jun-Mo</au><au>Qian, Guo-Ying</au><au>Si, Yue-Xiu</au><au>Park, Yong-Doo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Effects of osmolytes on arginine kinase from Euphausia superba: A study on thermal denaturation and aggregation</atitle><jtitle>Process biochemistry (1991)</jtitle><date>2014-06-01</date><risdate>2014</risdate><volume>49</volume><issue>6</issue><spage>936</spage><epage>947</epage><pages>936-947</pages><issn>1359-5113</issn><eissn>1873-3298</eissn><abstract>•Arginine kinase (AK) thermal folding mechanisms.•ORF sequence of AK from E. superba probing by RACE and computational simulations by using its gene sequence.•Comparisons between conformational changes and catalytic functions of AK during thermal denaturation.•Osmolytes roles for preventing AK aggregation and binding mechanisms predicted by docking simulations. Investigations of energy-related enzymatic properties may provide valuable information about the mechanisms that are involved in the adaptation to extreme climatic environments. The protective effects of osmolytes on the thermal denaturation and aggregation of arginine kinase from E. superba (ESAK) was investigated. When the concentration of glycine, proline and glycerol increased, the relative activation was significantly enhanced, while the aggregation of ESAK during thermal denaturation was decreased. Spectrofluorometry results showed that the presence of these three osmolytes significantly decreased the tertiary structural changes of ESAK and that thermal denaturation directly induced ESAK aggregation. The results demonstrated that glycine, proline and glycerol not only prevented ESAK from inactivation and unfolding but also inhibited aggregation by stabilizing the ESAK conformation. We measured the ORF gene sequence of ESAK by RACE, and built the 3D structure of ESAK and osmolytes by homology models. The results showed that the docking energy was relatively low and that the clustering groups were spread to the surface of ESAK, indicating that osmolytes directly protect the surface of the protein. Our study provides important insight into the protective effects of osmolytes on ESAK folding.</abstract><pub>Elsevier Ltd</pub><doi>10.1016/j.procbio.2014.03.019</doi><tpages>12</tpages></addata></record>
fulltext fulltext
identifier ISSN: 1359-5113
ispartof Process biochemistry (1991), 2014-06, Vol.49 (6), p.936-947
issn 1359-5113
1873-3298
language eng
recordid cdi_proquest_miscellaneous_1677974000
source Elsevier ScienceDirect Journals
subjects Agglomeration
Arginine kinase
Docking simulations
Euphausia superba
Glycerols
Glycine
Kinases
Osmolytes
Proline
Protective
RACE
Thermal denaturation
Three dimensional
title Effects of osmolytes on arginine kinase from Euphausia superba: A study on thermal denaturation and aggregation
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-20T09%3A34%3A02IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Effects%20of%20osmolytes%20on%20arginine%20kinase%20from%20Euphausia%20superba:%20A%20study%20on%20thermal%20denaturation%20and%20aggregation&rft.jtitle=Process%20biochemistry%20(1991)&rft.au=Fang,%20Nai-Yun&rft.date=2014-06-01&rft.volume=49&rft.issue=6&rft.spage=936&rft.epage=947&rft.pages=936-947&rft.issn=1359-5113&rft.eissn=1873-3298&rft_id=info:doi/10.1016/j.procbio.2014.03.019&rft_dat=%3Cproquest_cross%3E1677974000%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1560116193&rft_id=info:pmid/&rft_els_id=S1359511314001834&rfr_iscdi=true