Recombinase polymerase and enzyme-linked immunosorbent assay as a DNA amplification-detection strategy for food analysis
•Recombinase polymerase amplification is a powerful DNA method operating at 40°C.•The combination RPA–ELISA gives excellent performances for high-throughput analysis.•Screening of food safety threats has been done using standard laboratory equipment.•Allergens, GMOs, bacteria, and fungi have been su...
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Veröffentlicht in: | Analytica chimica acta 2014-02, Vol.811, p.81-87 |
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description | •Recombinase polymerase amplification is a powerful DNA method operating at 40°C.•The combination RPA–ELISA gives excellent performances for high-throughput analysis.•Screening of food safety threats has been done using standard laboratory equipment.•Allergens, GMOs, bacteria, and fungi have been successfully determined.
Polymerase chain reaction in conjunction with enzyme-linked immunosorbent assay (PCR–ELISA) is a well-established technique that provides a suitable rapid, sensitive, and selective method for a broad range of applications. However, the need for precise rapid temperature cycling of PCR is an important drawback that can be overcome by employing isothermal amplification reactions such as recombinase polymerase amplification (RPA). The RPA–ELISA combination is proposed for amplification at a low, constant temperature (40°C) in a short time (40min), for the hybridisation of labelled products to specific 5′-biotinylated probes/streptavidin in coated microtiter plates at room temperature, and for detection by colorimetric immunoassay. RPA–ELISA was applied to screen common safety threats in foodstuffs, such as allergens (hazelnut, peanut, soybean, tomato, and maize), genetically modified organisms (P35S and TNOS), pathogenic bacteria (Salmonella sp. and Cronobacter sp.), and fungi (Fusarium sp.). Satisfactory sensitivity and reproducibility results were achieved for all the targets. The RPA–ELISA technique does away with thermocycling and provides a suitable sensitive, specific, and cost-effective method for routine applications, and proves particularly useful for resource-limited settings. |
doi_str_mv | 10.1016/j.aca.2013.12.017 |
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Polymerase chain reaction in conjunction with enzyme-linked immunosorbent assay (PCR–ELISA) is a well-established technique that provides a suitable rapid, sensitive, and selective method for a broad range of applications. However, the need for precise rapid temperature cycling of PCR is an important drawback that can be overcome by employing isothermal amplification reactions such as recombinase polymerase amplification (RPA). The RPA–ELISA combination is proposed for amplification at a low, constant temperature (40°C) in a short time (40min), for the hybridisation of labelled products to specific 5′-biotinylated probes/streptavidin in coated microtiter plates at room temperature, and for detection by colorimetric immunoassay. RPA–ELISA was applied to screen common safety threats in foodstuffs, such as allergens (hazelnut, peanut, soybean, tomato, and maize), genetically modified organisms (P35S and TNOS), pathogenic bacteria (Salmonella sp. and Cronobacter sp.), and fungi (Fusarium sp.). Satisfactory sensitivity and reproducibility results were achieved for all the targets. The RPA–ELISA technique does away with thermocycling and provides a suitable sensitive, specific, and cost-effective method for routine applications, and proves particularly useful for resource-limited settings.</description><identifier>ISSN: 0003-2670</identifier><identifier>EISSN: 1873-4324</identifier><identifier>DOI: 10.1016/j.aca.2013.12.017</identifier><identifier>PMID: 24456598</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Allergen ; Allergens - analysis ; Amplification ; Arachis hypogaea ; Assaying ; Bacteria ; Colorimetry ; Corylus ; Cronobacter - genetics ; DNA - analysis ; DNA, Bacterial - analysis ; DNA, Fungal - analysis ; DNA, Plant - analysis ; DNA-Directed DNA Polymerase - metabolism ; ELISA ; Enzyme-Linked Immunosorbent Assay ; Food Analysis - methods ; Food Microbiology ; Food safety ; Fungi ; Fusarium ; Fusarium - genetics ; GMO ; Isothermal amplification ; Lycopersicon esculentum ; Nucleic Acid Amplification Techniques ; Pathogen ; Plants - genetics ; Plants, Genetically Modified - genetics ; Polymerase ; Recombinases - metabolism ; Salmonella ; Salmonella - genetics ; Soybeans ; Temperature ; Thermal cycling ; Zea mays</subject><ispartof>Analytica chimica acta, 2014-02, Vol.811, p.81-87</ispartof><rights>2013 Elsevier B.V.</rights><rights>Copyright © 2013 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c495t-9c29dcdebf6a1003e171163a67ce3a0a3aae12ce1be6fd7a16f5c8521f8c1e093</citedby><cites>FETCH-LOGICAL-c495t-9c29dcdebf6a1003e171163a67ce3a0a3aae12ce1be6fd7a16f5c8521f8c1e093</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0003267013015663$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24456598$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Santiago-Felipe, S.</creatorcontrib><creatorcontrib>Tortajada-Genaro, L.A.</creatorcontrib><creatorcontrib>Puchades, R.</creatorcontrib><creatorcontrib>Maquieira, A.</creatorcontrib><title>Recombinase polymerase and enzyme-linked immunosorbent assay as a DNA amplification-detection strategy for food analysis</title><title>Analytica chimica acta</title><addtitle>Anal Chim Acta</addtitle><description>•Recombinase polymerase amplification is a powerful DNA method operating at 40°C.•The combination RPA–ELISA gives excellent performances for high-throughput analysis.•Screening of food safety threats has been done using standard laboratory equipment.•Allergens, GMOs, bacteria, and fungi have been successfully determined.
Polymerase chain reaction in conjunction with enzyme-linked immunosorbent assay (PCR–ELISA) is a well-established technique that provides a suitable rapid, sensitive, and selective method for a broad range of applications. However, the need for precise rapid temperature cycling of PCR is an important drawback that can be overcome by employing isothermal amplification reactions such as recombinase polymerase amplification (RPA). The RPA–ELISA combination is proposed for amplification at a low, constant temperature (40°C) in a short time (40min), for the hybridisation of labelled products to specific 5′-biotinylated probes/streptavidin in coated microtiter plates at room temperature, and for detection by colorimetric immunoassay. RPA–ELISA was applied to screen common safety threats in foodstuffs, such as allergens (hazelnut, peanut, soybean, tomato, and maize), genetically modified organisms (P35S and TNOS), pathogenic bacteria (Salmonella sp. and Cronobacter sp.), and fungi (Fusarium sp.). Satisfactory sensitivity and reproducibility results were achieved for all the targets. The RPA–ELISA technique does away with thermocycling and provides a suitable sensitive, specific, and cost-effective method for routine applications, and proves particularly useful for resource-limited settings.</description><subject>Allergen</subject><subject>Allergens - analysis</subject><subject>Amplification</subject><subject>Arachis hypogaea</subject><subject>Assaying</subject><subject>Bacteria</subject><subject>Colorimetry</subject><subject>Corylus</subject><subject>Cronobacter - genetics</subject><subject>DNA - analysis</subject><subject>DNA, Bacterial - analysis</subject><subject>DNA, Fungal - analysis</subject><subject>DNA, Plant - analysis</subject><subject>DNA-Directed DNA Polymerase - metabolism</subject><subject>ELISA</subject><subject>Enzyme-Linked Immunosorbent Assay</subject><subject>Food Analysis - methods</subject><subject>Food Microbiology</subject><subject>Food safety</subject><subject>Fungi</subject><subject>Fusarium</subject><subject>Fusarium - genetics</subject><subject>GMO</subject><subject>Isothermal amplification</subject><subject>Lycopersicon esculentum</subject><subject>Nucleic Acid Amplification Techniques</subject><subject>Pathogen</subject><subject>Plants - genetics</subject><subject>Plants, Genetically Modified - genetics</subject><subject>Polymerase</subject><subject>Recombinases - metabolism</subject><subject>Salmonella</subject><subject>Salmonella - genetics</subject><subject>Soybeans</subject><subject>Temperature</subject><subject>Thermal cycling</subject><subject>Zea mays</subject><issn>0003-2670</issn><issn>1873-4324</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkU2P1SAUhonRONfRH-DGdOmmlQMFbuNqMn4mE02MrskpnBqubblCr7H-emnu6FJnAZyTPOcN8DD2FHgDHPSLQ4MOG8FBNiAaDuYe28HeyLqVor3PdpxzWQtt-AV7lPOhtAJ4-5BdiLZVWnX7Hfv5iVyc-jBjpuoYx3WitJU4-4rmX6WtxzB_I1-FaTrNMcfU07xUmDOuZa-wevXhqsLpOIYhOFxCnGtPC7mtqvKScKGvazXEVFb0JRjHNYf8mD0YcMz05Pa8ZF_evP58_a6--fj2_fXVTe3aTi1150Tnnad-0AjlOQQGQEvUxpFEjhKRQDiCnvTgDYIelNsrAcPeAfFOXrLn59xjit9PlBc7hexoHHGmeMoWtDGdVsqI_6NKAYAyXN4BFVzuteB3SG07oTvDYbsrnFGXYs6JBntMYcK0WuB2M24Pthi3m3ELwhbjZebZbfypn8j_nfijuAAvzwCVX_4RKNnsAs2OfEjFkvUx_CP-Nw6_vMU</recordid><startdate>20140206</startdate><enddate>20140206</enddate><creator>Santiago-Felipe, S.</creator><creator>Tortajada-Genaro, L.A.</creator><creator>Puchades, R.</creator><creator>Maquieira, A.</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7TM</scope><scope>7U5</scope><scope>8FD</scope><scope>L7M</scope></search><sort><creationdate>20140206</creationdate><title>Recombinase polymerase and enzyme-linked immunosorbent assay as a DNA amplification-detection strategy for food analysis</title><author>Santiago-Felipe, S. ; Tortajada-Genaro, L.A. ; Puchades, R. ; Maquieira, A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c495t-9c29dcdebf6a1003e171163a67ce3a0a3aae12ce1be6fd7a16f5c8521f8c1e093</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Allergen</topic><topic>Allergens - analysis</topic><topic>Amplification</topic><topic>Arachis hypogaea</topic><topic>Assaying</topic><topic>Bacteria</topic><topic>Colorimetry</topic><topic>Corylus</topic><topic>Cronobacter - genetics</topic><topic>DNA - analysis</topic><topic>DNA, Bacterial - analysis</topic><topic>DNA, Fungal - analysis</topic><topic>DNA, Plant - analysis</topic><topic>DNA-Directed DNA Polymerase - metabolism</topic><topic>ELISA</topic><topic>Enzyme-Linked Immunosorbent Assay</topic><topic>Food Analysis - methods</topic><topic>Food Microbiology</topic><topic>Food safety</topic><topic>Fungi</topic><topic>Fusarium</topic><topic>Fusarium - genetics</topic><topic>GMO</topic><topic>Isothermal amplification</topic><topic>Lycopersicon esculentum</topic><topic>Nucleic Acid Amplification Techniques</topic><topic>Pathogen</topic><topic>Plants - genetics</topic><topic>Plants, Genetically Modified - genetics</topic><topic>Polymerase</topic><topic>Recombinases - metabolism</topic><topic>Salmonella</topic><topic>Salmonella - genetics</topic><topic>Soybeans</topic><topic>Temperature</topic><topic>Thermal cycling</topic><topic>Zea mays</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Santiago-Felipe, S.</creatorcontrib><creatorcontrib>Tortajada-Genaro, L.A.</creatorcontrib><creatorcontrib>Puchades, R.</creatorcontrib><creatorcontrib>Maquieira, A.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Nucleic Acids Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>Technology Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><jtitle>Analytica chimica acta</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Santiago-Felipe, S.</au><au>Tortajada-Genaro, L.A.</au><au>Puchades, R.</au><au>Maquieira, A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Recombinase polymerase and enzyme-linked immunosorbent assay as a DNA amplification-detection strategy for food analysis</atitle><jtitle>Analytica chimica acta</jtitle><addtitle>Anal Chim Acta</addtitle><date>2014-02-06</date><risdate>2014</risdate><volume>811</volume><spage>81</spage><epage>87</epage><pages>81-87</pages><issn>0003-2670</issn><eissn>1873-4324</eissn><abstract>•Recombinase polymerase amplification is a powerful DNA method operating at 40°C.•The combination RPA–ELISA gives excellent performances for high-throughput analysis.•Screening of food safety threats has been done using standard laboratory equipment.•Allergens, GMOs, bacteria, and fungi have been successfully determined.
Polymerase chain reaction in conjunction with enzyme-linked immunosorbent assay (PCR–ELISA) is a well-established technique that provides a suitable rapid, sensitive, and selective method for a broad range of applications. However, the need for precise rapid temperature cycling of PCR is an important drawback that can be overcome by employing isothermal amplification reactions such as recombinase polymerase amplification (RPA). The RPA–ELISA combination is proposed for amplification at a low, constant temperature (40°C) in a short time (40min), for the hybridisation of labelled products to specific 5′-biotinylated probes/streptavidin in coated microtiter plates at room temperature, and for detection by colorimetric immunoassay. RPA–ELISA was applied to screen common safety threats in foodstuffs, such as allergens (hazelnut, peanut, soybean, tomato, and maize), genetically modified organisms (P35S and TNOS), pathogenic bacteria (Salmonella sp. and Cronobacter sp.), and fungi (Fusarium sp.). Satisfactory sensitivity and reproducibility results were achieved for all the targets. The RPA–ELISA technique does away with thermocycling and provides a suitable sensitive, specific, and cost-effective method for routine applications, and proves particularly useful for resource-limited settings.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>24456598</pmid><doi>10.1016/j.aca.2013.12.017</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Allergen Allergens - analysis Amplification Arachis hypogaea Assaying Bacteria Colorimetry Corylus Cronobacter - genetics DNA - analysis DNA, Bacterial - analysis DNA, Fungal - analysis DNA, Plant - analysis DNA-Directed DNA Polymerase - metabolism ELISA Enzyme-Linked Immunosorbent Assay Food Analysis - methods Food Microbiology Food safety Fungi Fusarium Fusarium - genetics GMO Isothermal amplification Lycopersicon esculentum Nucleic Acid Amplification Techniques Pathogen Plants - genetics Plants, Genetically Modified - genetics Polymerase Recombinases - metabolism Salmonella Salmonella - genetics Soybeans Temperature Thermal cycling Zea mays |
title | Recombinase polymerase and enzyme-linked immunosorbent assay as a DNA amplification-detection strategy for food analysis |
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