Mapping the HLA ligandome landscape of acute myeloid leukemia: a targeted approach toward peptide-based immunotherapy

Identification of physiologically relevant peptide vaccine targets calls for the direct analysis of the entirety of naturally presented human leukocyte antigen (HLA) ligands, termed the HLA ligandome. In this study, we implemented this direct approach using immunoprecipitation and mass spectrometry...

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Veröffentlicht in:Leukemia 2015-03, Vol.29 (3), p.647-659
Hauptverfasser: Berlin, C, Kowalewski, D J, Schuster, H, Mirza, N, Walz, S, Handel, M, Schmid-Horch, B, Salih, H R, Kanz, L, Rammensee, H-G, Stevanović, S, Stickel, J S
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container_start_page 647
container_title Leukemia
container_volume 29
creator Berlin, C
Kowalewski, D J
Schuster, H
Mirza, N
Walz, S
Handel, M
Schmid-Horch, B
Salih, H R
Kanz, L
Rammensee, H-G
Stevanović, S
Stickel, J S
description Identification of physiologically relevant peptide vaccine targets calls for the direct analysis of the entirety of naturally presented human leukocyte antigen (HLA) ligands, termed the HLA ligandome. In this study, we implemented this direct approach using immunoprecipitation and mass spectrometry to define acute myeloid leukemia (AML)-associated peptide vaccine targets. Mapping the HLA class I ligandomes of 15 AML patients and 35 healthy controls, more than 25 000 different naturally presented HLA ligands were identified. Target prioritization based on AML exclusivity and high presentation frequency in the AML cohort identified a panel of 132 LiTAAs (ligandome-derived tumor-associated antigens), and 341 corresponding HLA ligands (LiTAPs (ligandome-derived tumor-associated peptides)) represented subset independently in >20% of AML patients. Functional characterization of LiTAPs by interferon-γ ELISPOT (Enzyme-Linked ImmunoSpot) and intracellular cytokine staining confirmed AML-specific CD8 + T-cell recognition. Of note, our platform identified HLA ligands representing several established AML-associated antigens (e.g. NPM1, MAGED1, PRTN3, MPO, WT1), but found 80% of them to be also represented in healthy control samples. Mapping of HLA class II ligandomes provided additional CD4 + T-cell epitopes and potentially synergistic embedded HLA ligands, allowing for complementation of a multipeptide vaccine for the immunotherapy of AML.
doi_str_mv 10.1038/leu.2014.233
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Of note, our platform identified HLA ligands representing several established AML-associated antigens (e.g. NPM1, MAGED1, PRTN3, MPO, WT1), but found 80% of them to be also represented in healthy control samples. Mapping of HLA class II ligandomes provided additional CD4 + T-cell epitopes and potentially synergistic embedded HLA ligands, allowing for complementation of a multipeptide vaccine for the immunotherapy of AML.</description><subject>13/1</subject><subject>13/31</subject><subject>631/250/580</subject><subject>631/67/1059/2325</subject><subject>692/308/575</subject><subject>692/699/1541/1990/283/1897</subject><subject>82/16</subject><subject>82/58</subject><subject>82/80</subject><subject>Acute myeloid leukemia</subject><subject>Amino Acid Sequence</subject><subject>Antigen (tumor-associated)</subject><subject>Antigens</subject><subject>Cancer Research</subject><subject>Cancer Vaccines - administration &amp; dosage</subject><subject>Cancer Vaccines - genetics</subject><subject>Cancer Vaccines - immunology</subject><subject>Case-Control Studies</subject><subject>CD4 antigen</subject><subject>CD4-Positive T-Lymphocytes - immunology</subject><subject>CD4-Positive T-Lymphocytes - metabolism</subject><subject>CD4-Positive T-Lymphocytes - pathology</subject><subject>CD8 antigen</subject><subject>CD8-Positive T-Lymphocytes - immunology</subject><subject>CD8-Positive T-Lymphocytes - metabolism</subject><subject>CD8-Positive T-Lymphocytes - pathology</subject><subject>Cell recognition</subject><subject>Chromosome mapping</subject><subject>Critical Care Medicine</subject><subject>Enzyme-linked immunosorbent assay</subject><subject>Epitope mapping</subject><subject>Epitopes, T-Lymphocyte - chemistry</subject><subject>Epitopes, T-Lymphocyte - genetics</subject><subject>Epitopes, T-Lymphocyte - immunology</subject><subject>Gene Expression</subject><subject>Genetic aspects</subject><subject>Health aspects</subject><subject>Hematology</subject><subject>Histocompatibility antigen HLA</subject><subject>Histocompatibility antigens</subject><subject>Histocompatibility Antigens Class I - chemistry</subject><subject>Histocompatibility Antigens Class I - genetics</subject><subject>Histocompatibility Antigens Class I - immunology</subject><subject>Histocompatibility Antigens Class II - chemistry</subject><subject>Histocompatibility Antigens Class II - genetics</subject><subject>Histocompatibility Antigens Class II - immunology</subject><subject>HLA histocompatibility antigens</subject><subject>Humans</subject><subject>Immunoprecipitation</subject><subject>Immunotherapy</subject><subject>Immunotherapy, Active - methods</subject><subject>Innovations</subject><subject>Intensive</subject><subject>Interferon</subject><subject>Internal Medicine</subject><subject>Leukemia</subject><subject>Leukemia, Myeloid, Acute - genetics</subject><subject>Leukemia, Myeloid, Acute - immunology</subject><subject>Leukemia, Myeloid, Acute - pathology</subject><subject>Leukemia, Myeloid, Acute - therapy</subject><subject>Leukocytes</subject><subject>Ligands</subject><subject>Lymphocytes T</subject><subject>Mass Spectrometry</subject><subject>Mass spectroscopy</subject><subject>Medicine</subject><subject>Medicine &amp; 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In this study, we implemented this direct approach using immunoprecipitation and mass spectrometry to define acute myeloid leukemia (AML)-associated peptide vaccine targets. Mapping the HLA class I ligandomes of 15 AML patients and 35 healthy controls, more than 25 000 different naturally presented HLA ligands were identified. Target prioritization based on AML exclusivity and high presentation frequency in the AML cohort identified a panel of 132 LiTAAs (ligandome-derived tumor-associated antigens), and 341 corresponding HLA ligands (LiTAPs (ligandome-derived tumor-associated peptides)) represented subset independently in &gt;20% of AML patients. Functional characterization of LiTAPs by interferon-γ ELISPOT (Enzyme-Linked ImmunoSpot) and intracellular cytokine staining confirmed AML-specific CD8 + T-cell recognition. 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issn 0887-6924
1476-5551
language eng
recordid cdi_proquest_miscellaneous_1676355840
source MEDLINE; Springer Nature - Complete Springer Journals; Nature Journals Online; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals
subjects 13/1
13/31
631/250/580
631/67/1059/2325
692/308/575
692/699/1541/1990/283/1897
82/16
82/58
82/80
Acute myeloid leukemia
Amino Acid Sequence
Antigen (tumor-associated)
Antigens
Cancer Research
Cancer Vaccines - administration & dosage
Cancer Vaccines - genetics
Cancer Vaccines - immunology
Case-Control Studies
CD4 antigen
CD4-Positive T-Lymphocytes - immunology
CD4-Positive T-Lymphocytes - metabolism
CD4-Positive T-Lymphocytes - pathology
CD8 antigen
CD8-Positive T-Lymphocytes - immunology
CD8-Positive T-Lymphocytes - metabolism
CD8-Positive T-Lymphocytes - pathology
Cell recognition
Chromosome mapping
Critical Care Medicine
Enzyme-linked immunosorbent assay
Epitope mapping
Epitopes, T-Lymphocyte - chemistry
Epitopes, T-Lymphocyte - genetics
Epitopes, T-Lymphocyte - immunology
Gene Expression
Genetic aspects
Health aspects
Hematology
Histocompatibility antigen HLA
Histocompatibility antigens
Histocompatibility Antigens Class I - chemistry
Histocompatibility Antigens Class I - genetics
Histocompatibility Antigens Class I - immunology
Histocompatibility Antigens Class II - chemistry
Histocompatibility Antigens Class II - genetics
Histocompatibility Antigens Class II - immunology
HLA histocompatibility antigens
Humans
Immunoprecipitation
Immunotherapy
Immunotherapy, Active - methods
Innovations
Intensive
Interferon
Internal Medicine
Leukemia
Leukemia, Myeloid, Acute - genetics
Leukemia, Myeloid, Acute - immunology
Leukemia, Myeloid, Acute - pathology
Leukemia, Myeloid, Acute - therapy
Leukocytes
Ligands
Lymphocytes T
Mass Spectrometry
Mass spectroscopy
Medicine
Medicine & Public Health
Methods
Molecular Sequence Data
Myeloid leukemia
Neoplasm Proteins - genetics
Neoplasm Proteins - immunology
Oncology
original-article
Patient outcomes
Peptide Mapping
Peptides
Peptides - chemistry
Peptides - genetics
Peptides - immunology
Target recognition
Tumors
Vaccines
γ-Interferon
title Mapping the HLA ligandome landscape of acute myeloid leukemia: a targeted approach toward peptide-based immunotherapy
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