Homology Modeling of Nitrogenase Iron Protein of Nitrogen Fixing Actinomycete Arthrobacter sp
Nitrogenase is an important enzyme associated with nitrogen fixation. Nitrogenase iron protein (Nif H) is one of the vital genes contributing to the nitrogen fixation. Arthrobacter sp. is one of the actinomycetes fixing atmospheric nitrogen. Nitrogenase iron protein of Arthrobacter sp. was retrieved...
Gespeichert in:
| Veröffentlicht in: | International journal of computer applications 2013-01, Vol.61 (1), p.13-19 |
|---|---|
| Hauptverfasser: | , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 19 |
|---|---|
| container_issue | 1 |
| container_start_page | 13 |
| container_title | International journal of computer applications |
| container_volume | 61 |
| creator | Sharon, Febina Bernice Daniel, Rachel Regi |
| description | Nitrogenase is an important enzyme associated with nitrogen fixation. Nitrogenase iron protein (Nif H) is one of the vital genes contributing to the nitrogen fixation. Arthrobacter sp. is one of the actinomycetes fixing atmospheric nitrogen. Nitrogenase iron protein of Arthrobacter sp. was retrieved from NCBI in FASTA format and a good template was selected by Basic Local Alignment Search tool and it was found to be Azotobacter vinelandii. The modeling of 3D structure of the protein was performed by Swiss model, GENO3D and ModWeb. The modeled 3D structure was evaluated by ProSA, VERIFY3D, PROCHECK, PROVE and ERRAT. The nitrogenase iron protein 3D structure modeled by ModWeb was found to be the best reliable model based on the above mentioned evaluation. The structural dynamics were performed by WEBnm[at] and elNemo. 3D structure of the nitrogenase iron protein and visualized by Rasmol. |
| doi_str_mv | 10.5120/9891-4457 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1671287804</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2879517401</sourcerecordid><originalsourceid>FETCH-LOGICAL-c2037-88886261adb963238038dc38e24f4f26e0c7abb69f3433dbcc9f05c077f7f8913</originalsourceid><addsrcrecordid>eNqFkUtLAzEUhYMoWGoX_oOAG12M5jV5LEuxD6iPhS4lzGSSOmVmUpMU7L93hroobrybe-F-3HsOB4BrjO5zTNCDkgpnjOXiDIyQEnkmpRTnJ_MlmMS4RX1RRbhiI_Cx9K1v_OYAn3xlm7rbQO_gc52C39iuiBaugu_ga_DJ1t3pDs7r7wGfmlR3vj0YmyychvQZfFmYZAOMuytw4Yom2slvH4P3-ePbbJmtXxar2XSdGYKoGKRJTjguqlJxSqhEVFaGSkuYY45wi4woypIrRxmlVWmMcig3SAgnXO-ZjsHt8e4u-K-9jUm3dTS2aYrO-n3UmAtMpJCI_Y9SnHOMWK9hDG7-oFu_D11vRPfXKGKc5cPvuyNlgo8xWKd3oW6LcNAY6SEWPcSih1joD1BqfUc</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1283046451</pqid></control><display><type>article</type><title>Homology Modeling of Nitrogenase Iron Protein of Nitrogen Fixing Actinomycete Arthrobacter sp</title><source>EZB-FREE-00999 freely available EZB journals</source><creator>Sharon, Febina Bernice ; Daniel, Rachel Regi</creator><creatorcontrib>Sharon, Febina Bernice ; Daniel, Rachel Regi</creatorcontrib><description>Nitrogenase is an important enzyme associated with nitrogen fixation. Nitrogenase iron protein (Nif H) is one of the vital genes contributing to the nitrogen fixation. Arthrobacter sp. is one of the actinomycetes fixing atmospheric nitrogen. Nitrogenase iron protein of Arthrobacter sp. was retrieved from NCBI in FASTA format and a good template was selected by Basic Local Alignment Search tool and it was found to be Azotobacter vinelandii. The modeling of 3D structure of the protein was performed by Swiss model, GENO3D and ModWeb. The modeled 3D structure was evaluated by ProSA, VERIFY3D, PROCHECK, PROVE and ERRAT. The nitrogenase iron protein 3D structure modeled by ModWeb was found to be the best reliable model based on the above mentioned evaluation. The structural dynamics were performed by WEBnm[at] and elNemo. 3D structure of the nitrogenase iron protein and visualized by Rasmol.</description><identifier>ISSN: 0975-8887</identifier><identifier>EISSN: 0975-8887</identifier><identifier>DOI: 10.5120/9891-4457</identifier><language>eng</language><publisher>New York: Foundation of Computer Science</publisher><subject>Actinomycetes ; Arthrobacter ; Azotobacter vinelandii ; Fixation ; Iron ; Proteins ; Searching ; Three dimensional ; Three dimensional models</subject><ispartof>International journal of computer applications, 2013-01, Vol.61 (1), p.13-19</ispartof><rights>Copyright Foundation of Computer Science 2013</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c2037-88886261adb963238038dc38e24f4f26e0c7abb69f3433dbcc9f05c077f7f8913</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids></links><search><creatorcontrib>Sharon, Febina Bernice</creatorcontrib><creatorcontrib>Daniel, Rachel Regi</creatorcontrib><title>Homology Modeling of Nitrogenase Iron Protein of Nitrogen Fixing Actinomycete Arthrobacter sp</title><title>International journal of computer applications</title><description>Nitrogenase is an important enzyme associated with nitrogen fixation. Nitrogenase iron protein (Nif H) is one of the vital genes contributing to the nitrogen fixation. Arthrobacter sp. is one of the actinomycetes fixing atmospheric nitrogen. Nitrogenase iron protein of Arthrobacter sp. was retrieved from NCBI in FASTA format and a good template was selected by Basic Local Alignment Search tool and it was found to be Azotobacter vinelandii. The modeling of 3D structure of the protein was performed by Swiss model, GENO3D and ModWeb. The modeled 3D structure was evaluated by ProSA, VERIFY3D, PROCHECK, PROVE and ERRAT. The nitrogenase iron protein 3D structure modeled by ModWeb was found to be the best reliable model based on the above mentioned evaluation. The structural dynamics were performed by WEBnm[at] and elNemo. 3D structure of the nitrogenase iron protein and visualized by Rasmol.</description><subject>Actinomycetes</subject><subject>Arthrobacter</subject><subject>Azotobacter vinelandii</subject><subject>Fixation</subject><subject>Iron</subject><subject>Proteins</subject><subject>Searching</subject><subject>Three dimensional</subject><subject>Three dimensional models</subject><issn>0975-8887</issn><issn>0975-8887</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><recordid>eNqFkUtLAzEUhYMoWGoX_oOAG12M5jV5LEuxD6iPhS4lzGSSOmVmUpMU7L93hroobrybe-F-3HsOB4BrjO5zTNCDkgpnjOXiDIyQEnkmpRTnJ_MlmMS4RX1RRbhiI_Cx9K1v_OYAn3xlm7rbQO_gc52C39iuiBaugu_ga_DJ1t3pDs7r7wGfmlR3vj0YmyychvQZfFmYZAOMuytw4Yom2slvH4P3-ePbbJmtXxar2XSdGYKoGKRJTjguqlJxSqhEVFaGSkuYY45wi4woypIrRxmlVWmMcig3SAgnXO-ZjsHt8e4u-K-9jUm3dTS2aYrO-n3UmAtMpJCI_Y9SnHOMWK9hDG7-oFu_D11vRPfXKGKc5cPvuyNlgo8xWKd3oW6LcNAY6SEWPcSih1joD1BqfUc</recordid><startdate>20130101</startdate><enddate>20130101</enddate><creator>Sharon, Febina Bernice</creator><creator>Daniel, Rachel Regi</creator><general>Foundation of Computer Science</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SC</scope><scope>8FD</scope><scope>JQ2</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>7QL</scope><scope>C1K</scope></search><sort><creationdate>20130101</creationdate><title>Homology Modeling of Nitrogenase Iron Protein of Nitrogen Fixing Actinomycete Arthrobacter sp</title><author>Sharon, Febina Bernice ; Daniel, Rachel Regi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2037-88886261adb963238038dc38e24f4f26e0c7abb69f3433dbcc9f05c077f7f8913</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Actinomycetes</topic><topic>Arthrobacter</topic><topic>Azotobacter vinelandii</topic><topic>Fixation</topic><topic>Iron</topic><topic>Proteins</topic><topic>Searching</topic><topic>Three dimensional</topic><topic>Three dimensional models</topic><toplevel>online_resources</toplevel><creatorcontrib>Sharon, Febina Bernice</creatorcontrib><creatorcontrib>Daniel, Rachel Regi</creatorcontrib><collection>CrossRef</collection><collection>Computer and Information Systems Abstracts</collection><collection>Technology Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>International journal of computer applications</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sharon, Febina Bernice</au><au>Daniel, Rachel Regi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Homology Modeling of Nitrogenase Iron Protein of Nitrogen Fixing Actinomycete Arthrobacter sp</atitle><jtitle>International journal of computer applications</jtitle><date>2013-01-01</date><risdate>2013</risdate><volume>61</volume><issue>1</issue><spage>13</spage><epage>19</epage><pages>13-19</pages><issn>0975-8887</issn><eissn>0975-8887</eissn><abstract>Nitrogenase is an important enzyme associated with nitrogen fixation. Nitrogenase iron protein (Nif H) is one of the vital genes contributing to the nitrogen fixation. Arthrobacter sp. is one of the actinomycetes fixing atmospheric nitrogen. Nitrogenase iron protein of Arthrobacter sp. was retrieved from NCBI in FASTA format and a good template was selected by Basic Local Alignment Search tool and it was found to be Azotobacter vinelandii. The modeling of 3D structure of the protein was performed by Swiss model, GENO3D and ModWeb. The modeled 3D structure was evaluated by ProSA, VERIFY3D, PROCHECK, PROVE and ERRAT. The nitrogenase iron protein 3D structure modeled by ModWeb was found to be the best reliable model based on the above mentioned evaluation. The structural dynamics were performed by WEBnm[at] and elNemo. 3D structure of the nitrogenase iron protein and visualized by Rasmol.</abstract><cop>New York</cop><pub>Foundation of Computer Science</pub><doi>10.5120/9891-4457</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0975-8887 |
| ispartof | International journal of computer applications, 2013-01, Vol.61 (1), p.13-19 |
| issn | 0975-8887 0975-8887 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1671287804 |
| source | EZB-FREE-00999 freely available EZB journals |
| subjects | Actinomycetes Arthrobacter Azotobacter vinelandii Fixation Iron Proteins Searching Three dimensional Three dimensional models |
| title | Homology Modeling of Nitrogenase Iron Protein of Nitrogen Fixing Actinomycete Arthrobacter sp |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-22T01%3A35%3A55IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Homology%20Modeling%20of%20Nitrogenase%20Iron%20Protein%20of%20Nitrogen%20Fixing%20Actinomycete%20Arthrobacter%20sp&rft.jtitle=International%20journal%20of%20computer%20applications&rft.au=Sharon,%20Febina%20Bernice&rft.date=2013-01-01&rft.volume=61&rft.issue=1&rft.spage=13&rft.epage=19&rft.pages=13-19&rft.issn=0975-8887&rft.eissn=0975-8887&rft_id=info:doi/10.5120/9891-4457&rft_dat=%3Cproquest_cross%3E2879517401%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1283046451&rft_id=info:pmid/&rfr_iscdi=true |