Mutational analysis and molecular modeling of the N-terminal kringle-containing domain of hepatocyte growth factor identifies amino acid side chains important for interaction with the c-Met receptor
The hepatocyte growth factor receptor (HGFr) transduces a wide range of biological signals, including mitogenesis, motogenesis and morphogenesis. We recently localized a region within the N-terminal 175 amino acids of hepatocyte growth factor (HGF), termed HGF/NK1, that is necessary and sufficient f...
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Veröffentlicht in: | Protein engineering 1994-07, Vol.7 (7), p.895-903 |
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description | The hepatocyte growth factor receptor (HGFr) transduces a wide range of biological signals, including mitogenesis, motogenesis and morphogenesis. We recently localized a region within the N-terminal 175 amino acids of hepatocyte growth factor (HGF), termed HGF/NK1, that is necessary and sufficient for binding to the HGFr. HGF/NK1 contains an as-yet structurally undefined N-terminal region followed by the first of four HGF kringles. We have used a combination of molecular modeling and mutagenesis to dissect the function of this region of HGF. Two mutation-sensitive patches on the proposed surface regions of HGF kringle one (K1) were identified. The first patch consists of residues E159, S161, E195 and R197, all of which are predicted to be close to each other in the tertiary structure of K1. The second patch, lying on the opposite side of the kringle, consists of residues D171 and Q173. Mutational analysis of the N-terminal region of HGF identified residue D117 which also appeared to influence receptor binding. We also investigated the properties of a naturally occurring HGF variant (delta 5-HGF) that arises from an alternatively spliced transcript and therefore lacks five residues within K1. Our data suggest that in wild-type HGF, F162 is crucial in maintaining the hydrophobic core of the kringle. In delta 5-HGF, the loss of this residue is compensated for by a functional substitution of F162 with Y167, which is predicted to occupy the delta 5-HGF K1 core. Comparison of the models of wild-type and delta 5 kringles reveals that the positions of the presumed receptor binding determinants remain unchanged. |
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A ; PRESTA, L. G ; GODOWSKI, P. J</creator><creatorcontrib>LOKKER, N. A ; PRESTA, L. G ; GODOWSKI, P. J</creatorcontrib><description>The hepatocyte growth factor receptor (HGFr) transduces a wide range of biological signals, including mitogenesis, motogenesis and morphogenesis. We recently localized a region within the N-terminal 175 amino acids of hepatocyte growth factor (HGF), termed HGF/NK1, that is necessary and sufficient for binding to the HGFr. HGF/NK1 contains an as-yet structurally undefined N-terminal region followed by the first of four HGF kringles. We have used a combination of molecular modeling and mutagenesis to dissect the function of this region of HGF. Two mutation-sensitive patches on the proposed surface regions of HGF kringle one (K1) were identified. The first patch consists of residues E159, S161, E195 and R197, all of which are predicted to be close to each other in the tertiary structure of K1. The second patch, lying on the opposite side of the kringle, consists of residues D171 and Q173. Mutational analysis of the N-terminal region of HGF identified residue D117 which also appeared to influence receptor binding. We also investigated the properties of a naturally occurring HGF variant (delta 5-HGF) that arises from an alternatively spliced transcript and therefore lacks five residues within K1. Our data suggest that in wild-type HGF, F162 is crucial in maintaining the hydrophobic core of the kringle. In delta 5-HGF, the loss of this residue is compensated for by a functional substitution of F162 with Y167, which is predicted to occupy the delta 5-HGF K1 core. Comparison of the models of wild-type and delta 5 kringles reveals that the positions of the presumed receptor binding determinants remain unchanged.</description><identifier>ISSN: 0269-2139</identifier><identifier>EISSN: 1460-213X</identifier><identifier>DOI: 10.1093/protein/7.7.895</identifier><identifier>PMID: 7971951</identifier><identifier>CODEN: PRENE9</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>Amino Acid Sequence ; Animals ; Binding Sites ; Biological and medical sciences ; Biotechnology ; Cell Line ; CHO Cells ; Computer Simulation ; Cricetinae ; Crystallography, X-Ray ; Dogs ; Fibrin - metabolism ; Fundamental and applied biological sciences. Psychology ; Hepatocyte Growth Factor - metabolism ; Kidney ; Kringles ; Methods. Procedures. Technologies ; Models, Molecular ; Molecular Sequence Data ; Mutagenesis, Site-Directed ; Protein Binding ; Protein engineering ; Protein Structure, Tertiary ; Proto-Oncogene Proteins c-met ; Receptor Protein-Tyrosine Kinases - chemistry ; Receptor Protein-Tyrosine Kinases - metabolism ; Sequence Alignment ; Sequence Homology, Amino Acid ; Signal Transduction</subject><ispartof>Protein engineering, 1994-07, Vol.7 (7), p.895-903</ispartof><rights>1994 INIST-CNRS</rights><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=4210394$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/7971951$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>LOKKER, N. A</creatorcontrib><creatorcontrib>PRESTA, L. G</creatorcontrib><creatorcontrib>GODOWSKI, P. J</creatorcontrib><title>Mutational analysis and molecular modeling of the N-terminal kringle-containing domain of hepatocyte growth factor identifies amino acid side chains important for interaction with the c-Met receptor</title><title>Protein engineering</title><addtitle>Protein Eng</addtitle><description>The hepatocyte growth factor receptor (HGFr) transduces a wide range of biological signals, including mitogenesis, motogenesis and morphogenesis. We recently localized a region within the N-terminal 175 amino acids of hepatocyte growth factor (HGF), termed HGF/NK1, that is necessary and sufficient for binding to the HGFr. HGF/NK1 contains an as-yet structurally undefined N-terminal region followed by the first of four HGF kringles. We have used a combination of molecular modeling and mutagenesis to dissect the function of this region of HGF. Two mutation-sensitive patches on the proposed surface regions of HGF kringle one (K1) were identified. The first patch consists of residues E159, S161, E195 and R197, all of which are predicted to be close to each other in the tertiary structure of K1. The second patch, lying on the opposite side of the kringle, consists of residues D171 and Q173. Mutational analysis of the N-terminal region of HGF identified residue D117 which also appeared to influence receptor binding. We also investigated the properties of a naturally occurring HGF variant (delta 5-HGF) that arises from an alternatively spliced transcript and therefore lacks five residues within K1. Our data suggest that in wild-type HGF, F162 is crucial in maintaining the hydrophobic core of the kringle. In delta 5-HGF, the loss of this residue is compensated for by a functional substitution of F162 with Y167, which is predicted to occupy the delta 5-HGF K1 core. Comparison of the models of wild-type and delta 5 kringles reveals that the positions of the presumed receptor binding determinants remain unchanged.</description><subject>Amino Acid Sequence</subject><subject>Animals</subject><subject>Binding Sites</subject><subject>Biological and medical sciences</subject><subject>Biotechnology</subject><subject>Cell Line</subject><subject>CHO Cells</subject><subject>Computer Simulation</subject><subject>Cricetinae</subject><subject>Crystallography, X-Ray</subject><subject>Dogs</subject><subject>Fibrin - metabolism</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Hepatocyte Growth Factor - metabolism</subject><subject>Kidney</subject><subject>Kringles</subject><subject>Methods. Procedures. Technologies</subject><subject>Models, Molecular</subject><subject>Molecular Sequence Data</subject><subject>Mutagenesis, Site-Directed</subject><subject>Protein Binding</subject><subject>Protein engineering</subject><subject>Protein Structure, Tertiary</subject><subject>Proto-Oncogene Proteins c-met</subject><subject>Receptor Protein-Tyrosine Kinases - chemistry</subject><subject>Receptor Protein-Tyrosine Kinases - metabolism</subject><subject>Sequence Alignment</subject><subject>Sequence Homology, Amino Acid</subject><subject>Signal Transduction</subject><issn>0269-2139</issn><issn>1460-213X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1994</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kE9v1DAQxS0EKtvCmROSD4hbtv6T2PERVQUqtXABidvKscddg2MH21G1X5DPhSNWXOynmd97MxqE3lCyp0Tx6yWnCj5ey73cj2p4hna0F6RjlP94jnaECbVp9RJdlvKTEDISxS7QhVSSqoHu0J-HterqU9QB6_acii9NWDynAGYNOjdlIfj4iJPD9Qj4S1chz35z_MqtHqAzKVbt4wbZNDe1sUdYdE3mVAE_5vRUj9hpU1PG3kKs3nlok1pOwtp4i0srY3Ns5oL9vKRcdazYbXxsA5u1bYmffMvZtjDdA1ScwcDSMl-hF06HAq_P_xX6_vH2283n7v7rp7ubD_fdQtVYO075YAbHJ6asNL1yk5uUYyNIawfQ0ygmJlgvJBgmDZfOKalgmAaj3NAzya_Q-3-57e6_Vyj1MPtiIAQdIa3lQIUYBRGkgW_P4DrNYA9L9rPOp8P58K3_7tzXxejgso7Gl_9Yzyjhqud_AZmqmWE</recordid><startdate>19940701</startdate><enddate>19940701</enddate><creator>LOKKER, N. A</creator><creator>PRESTA, L. G</creator><creator>GODOWSKI, P. J</creator><general>Oxford University Press</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7TM</scope><scope>7TO</scope><scope>H94</scope></search><sort><creationdate>19940701</creationdate><title>Mutational analysis and molecular modeling of the N-terminal kringle-containing domain of hepatocyte growth factor identifies amino acid side chains important for interaction with the c-Met receptor</title><author>LOKKER, N. A ; PRESTA, L. G ; GODOWSKI, P. J</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p198t-3135c5f3b29d7c49fbfb9f28e7dd5eab86b262467ec27c37ff979e5b5c9f54273</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1994</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Binding Sites</topic><topic>Biological and medical sciences</topic><topic>Biotechnology</topic><topic>Cell Line</topic><topic>CHO Cells</topic><topic>Computer Simulation</topic><topic>Cricetinae</topic><topic>Crystallography, X-Ray</topic><topic>Dogs</topic><topic>Fibrin - metabolism</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Hepatocyte Growth Factor - metabolism</topic><topic>Kidney</topic><topic>Kringles</topic><topic>Methods. Procedures. Technologies</topic><topic>Models, Molecular</topic><topic>Molecular Sequence Data</topic><topic>Mutagenesis, Site-Directed</topic><topic>Protein Binding</topic><topic>Protein engineering</topic><topic>Protein Structure, Tertiary</topic><topic>Proto-Oncogene Proteins c-met</topic><topic>Receptor Protein-Tyrosine Kinases - chemistry</topic><topic>Receptor Protein-Tyrosine Kinases - metabolism</topic><topic>Sequence Alignment</topic><topic>Sequence Homology, Amino Acid</topic><topic>Signal Transduction</topic><toplevel>online_resources</toplevel><creatorcontrib>LOKKER, N. A</creatorcontrib><creatorcontrib>PRESTA, L. G</creatorcontrib><creatorcontrib>GODOWSKI, P. J</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><jtitle>Protein engineering</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>LOKKER, N. A</au><au>PRESTA, L. G</au><au>GODOWSKI, P. J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mutational analysis and molecular modeling of the N-terminal kringle-containing domain of hepatocyte growth factor identifies amino acid side chains important for interaction with the c-Met receptor</atitle><jtitle>Protein engineering</jtitle><addtitle>Protein Eng</addtitle><date>1994-07-01</date><risdate>1994</risdate><volume>7</volume><issue>7</issue><spage>895</spage><epage>903</epage><pages>895-903</pages><issn>0269-2139</issn><eissn>1460-213X</eissn><coden>PRENE9</coden><abstract>The hepatocyte growth factor receptor (HGFr) transduces a wide range of biological signals, including mitogenesis, motogenesis and morphogenesis. We recently localized a region within the N-terminal 175 amino acids of hepatocyte growth factor (HGF), termed HGF/NK1, that is necessary and sufficient for binding to the HGFr. HGF/NK1 contains an as-yet structurally undefined N-terminal region followed by the first of four HGF kringles. We have used a combination of molecular modeling and mutagenesis to dissect the function of this region of HGF. Two mutation-sensitive patches on the proposed surface regions of HGF kringle one (K1) were identified. The first patch consists of residues E159, S161, E195 and R197, all of which are predicted to be close to each other in the tertiary structure of K1. The second patch, lying on the opposite side of the kringle, consists of residues D171 and Q173. Mutational analysis of the N-terminal region of HGF identified residue D117 which also appeared to influence receptor binding. We also investigated the properties of a naturally occurring HGF variant (delta 5-HGF) that arises from an alternatively spliced transcript and therefore lacks five residues within K1. Our data suggest that in wild-type HGF, F162 is crucial in maintaining the hydrophobic core of the kringle. In delta 5-HGF, the loss of this residue is compensated for by a functional substitution of F162 with Y167, which is predicted to occupy the delta 5-HGF K1 core. Comparison of the models of wild-type and delta 5 kringles reveals that the positions of the presumed receptor binding determinants remain unchanged.</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>7971951</pmid><doi>10.1093/protein/7.7.895</doi><tpages>9</tpages></addata></record> |
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subjects | Amino Acid Sequence Animals Binding Sites Biological and medical sciences Biotechnology Cell Line CHO Cells Computer Simulation Cricetinae Crystallography, X-Ray Dogs Fibrin - metabolism Fundamental and applied biological sciences. Psychology Hepatocyte Growth Factor - metabolism Kidney Kringles Methods. Procedures. Technologies Models, Molecular Molecular Sequence Data Mutagenesis, Site-Directed Protein Binding Protein engineering Protein Structure, Tertiary Proto-Oncogene Proteins c-met Receptor Protein-Tyrosine Kinases - chemistry Receptor Protein-Tyrosine Kinases - metabolism Sequence Alignment Sequence Homology, Amino Acid Signal Transduction |
title | Mutational analysis and molecular modeling of the N-terminal kringle-containing domain of hepatocyte growth factor identifies amino acid side chains important for interaction with the c-Met receptor |
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