Algal and Fungal Diversity in Antarctic Lichens
The composition of lichen ecosystems except mycobiont and photobiont has not been evaluated intensively. In addition, recent studies to identify algal genotypes have raised questions about the specific relationship between mycobiont and photobiont. In the current study, we analyzed algal and fungal...
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Veröffentlicht in: | The Journal of eukaryotic microbiology 2015-03, Vol.62 (2), p.196-205 |
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creator | Park, Chae Haeng Kim, Kyung Mo Elvebakk, Arve Kim, Ok‐Sun Jeong, Gajin Hong, Soon Gyu |
description | The composition of lichen ecosystems except mycobiont and photobiont has not been evaluated intensively. In addition, recent studies to identify algal genotypes have raised questions about the specific relationship between mycobiont and photobiont. In the current study, we analyzed algal and fungal community structures in lichen species from King George Island, Antarctica, by pyrosequencing of eukaryotic large subunit (LSU) and algal internal transcribed spacer (ITS) domains of the nuclear rRNA gene. The sequencing results of LSU and ITS regions indicated that each lichen thallus contained diverse algal species. The major algal operational taxonomic unit (OTU) defined at a 99% similarity cutoff of LSU sequences accounted for 78.7–100% of the total algal community in each sample. In several cases, the major OTUs defined by LSU sequences were represented by two closely related OTUs defined by 98% sequence similarity of ITS domain. The results of LSU sequences indicated that lichen‐associated fungi belonged to the Arthoniomycetes, Eurotiomycetes, Lecanoromycetes, Leotiomycetes, and Sordariomycetes of the Ascomycota, and Tremellomycetes and Cystobasidiomycetes of the Basidiomycota. The composition of major photobiont species and lichen‐associated fungal community were mostly related to the mycobiont species. The contribution of growth forms or substrates on composition of photobiont and lichen‐associated fungi was not evident. |
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In addition, recent studies to identify algal genotypes have raised questions about the specific relationship between mycobiont and photobiont. In the current study, we analyzed algal and fungal community structures in lichen species from King George Island, Antarctica, by pyrosequencing of eukaryotic large subunit (LSU) and algal internal transcribed spacer (ITS) domains of the nuclear rRNA gene. The sequencing results of LSU and ITS regions indicated that each lichen thallus contained diverse algal species. The major algal operational taxonomic unit (OTU) defined at a 99% similarity cutoff of LSU sequences accounted for 78.7–100% of the total algal community in each sample. In several cases, the major OTUs defined by LSU sequences were represented by two closely related OTUs defined by 98% sequence similarity of ITS domain. The results of LSU sequences indicated that lichen‐associated fungi belonged to the Arthoniomycetes, Eurotiomycetes, Lecanoromycetes, Leotiomycetes, and Sordariomycetes of the Ascomycota, and Tremellomycetes and Cystobasidiomycetes of the Basidiomycota. The composition of major photobiont species and lichen‐associated fungal community were mostly related to the mycobiont species. The contribution of growth forms or substrates on composition of photobiont and lichen‐associated fungi was not evident.</description><identifier>ISSN: 1066-5234</identifier><identifier>EISSN: 1550-7408</identifier><identifier>DOI: 10.1111/jeu.12159</identifier><identifier>PMID: 25105247</identifier><language>eng</language><publisher>United States: Society of Protozoologists</publisher><subject>Antarctic Regions ; Arthoniomycetes ; Ascomycota ; Biodiversity ; Chlorophyta - classification ; Cladonia ; community structure ; Cystobasidiomycetes ; Ecosystem ; ecosystems ; Eurotiomycetes ; fungal communities ; fungi ; Fungi - classification ; genes ; Genes, rRNA ; Genotype ; internal transcribed spacers ; Lecanoromycetes ; Leotiomycetes ; lichen-associated fungi ; lichens ; Lichens - classification ; Lichens - genetics ; microalgae ; Phylogeny ; ribosomal RNA ; Sequence Analysis, DNA ; sequence homology ; Sordariomycetes ; thallus ; Tremellomycetes ; Umbilicaria ; Usnea</subject><ispartof>The Journal of eukaryotic microbiology, 2015-03, Vol.62 (2), p.196-205</ispartof><rights>2014 The Author(s) Journal of Eukaryotic Microbiology © 2014 International Society of Protistologists</rights><rights>2014 The Author(s) Journal of Eukaryotic Microbiology © 2014 International Society of Protistologists.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c7669-973d1711666de32af69ceefb233eb0cb29fbaac9039863f9d1ce43abcc4167383</citedby><cites>FETCH-LOGICAL-c7669-973d1711666de32af69ceefb233eb0cb29fbaac9039863f9d1ce43abcc4167383</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fjeu.12159$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fjeu.12159$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27903,27904,45553,45554</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25105247$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Park, Chae Haeng</creatorcontrib><creatorcontrib>Kim, Kyung Mo</creatorcontrib><creatorcontrib>Elvebakk, Arve</creatorcontrib><creatorcontrib>Kim, Ok‐Sun</creatorcontrib><creatorcontrib>Jeong, Gajin</creatorcontrib><creatorcontrib>Hong, Soon Gyu</creatorcontrib><title>Algal and Fungal Diversity in Antarctic Lichens</title><title>The Journal of eukaryotic microbiology</title><addtitle>J. Eukaryot. Microbiol</addtitle><description>The composition of lichen ecosystems except mycobiont and photobiont has not been evaluated intensively. In addition, recent studies to identify algal genotypes have raised questions about the specific relationship between mycobiont and photobiont. In the current study, we analyzed algal and fungal community structures in lichen species from King George Island, Antarctica, by pyrosequencing of eukaryotic large subunit (LSU) and algal internal transcribed spacer (ITS) domains of the nuclear rRNA gene. The sequencing results of LSU and ITS regions indicated that each lichen thallus contained diverse algal species. The major algal operational taxonomic unit (OTU) defined at a 99% similarity cutoff of LSU sequences accounted for 78.7–100% of the total algal community in each sample. In several cases, the major OTUs defined by LSU sequences were represented by two closely related OTUs defined by 98% sequence similarity of ITS domain. The results of LSU sequences indicated that lichen‐associated fungi belonged to the Arthoniomycetes, Eurotiomycetes, Lecanoromycetes, Leotiomycetes, and Sordariomycetes of the Ascomycota, and Tremellomycetes and Cystobasidiomycetes of the Basidiomycota. The composition of major photobiont species and lichen‐associated fungal community were mostly related to the mycobiont species. The contribution of growth forms or substrates on composition of photobiont and lichen‐associated fungi was not evident.</description><subject>Antarctic Regions</subject><subject>Arthoniomycetes</subject><subject>Ascomycota</subject><subject>Biodiversity</subject><subject>Chlorophyta - classification</subject><subject>Cladonia</subject><subject>community structure</subject><subject>Cystobasidiomycetes</subject><subject>Ecosystem</subject><subject>ecosystems</subject><subject>Eurotiomycetes</subject><subject>fungal communities</subject><subject>fungi</subject><subject>Fungi - classification</subject><subject>genes</subject><subject>Genes, rRNA</subject><subject>Genotype</subject><subject>internal transcribed spacers</subject><subject>Lecanoromycetes</subject><subject>Leotiomycetes</subject><subject>lichen-associated fungi</subject><subject>lichens</subject><subject>Lichens - classification</subject><subject>Lichens - genetics</subject><subject>microalgae</subject><subject>Phylogeny</subject><subject>ribosomal RNA</subject><subject>Sequence Analysis, DNA</subject><subject>sequence homology</subject><subject>Sordariomycetes</subject><subject>thallus</subject><subject>Tremellomycetes</subject><subject>Umbilicaria</subject><subject>Usnea</subject><issn>1066-5234</issn><issn>1550-7408</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkc1SwjAURjOOjiC68AW0S10U8tOmzZJBQJHRhaLLTJqmGCwtJq3K2xsosnPGbHIX557cfBeAcwS7yJ3eQtVdhFHIDkAbhSH0owDGh66GlPohJkELnFi7gBBRjNAxaOEQwRAHURv0-vlc5J4oUm9UF5vyRn8qY3W19nTh9YtKGFlp6U21fFOFPQVHmcitOtvdHTAbDZ8Ht_70cXw36E99GVHKfBaRFEUIUUpTRbDIKJNKZQkmRCVQJphliRCSQcJiSjKWIqkCIhIpA0QjEpMOuGq8K1N-1MpWfKmtVHkuClXWljtzgBGBhPwHhY7F7qEOuG5QaUprjcr4yuilMGuOIN9EyV2UfBulYy922jpZqnRP_mbngF4DfOlcrf828clw9qv0mw5tK_W97xDmnbtPRyF_fRjzIGbk_mXC-Gbcy4bPRMnF3GjLZ0_YbdFtEm-NP4cnkv4</recordid><startdate>201503</startdate><enddate>201503</enddate><creator>Park, Chae Haeng</creator><creator>Kim, Kyung Mo</creator><creator>Elvebakk, Arve</creator><creator>Kim, Ok‐Sun</creator><creator>Jeong, Gajin</creator><creator>Hong, Soon Gyu</creator><general>Society of Protozoologists</general><general>Blackwell Publishing Ltd</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope></search><sort><creationdate>201503</creationdate><title>Algal and Fungal Diversity in Antarctic Lichens</title><author>Park, Chae Haeng ; Kim, Kyung Mo ; Elvebakk, Arve ; Kim, Ok‐Sun ; Jeong, Gajin ; Hong, Soon Gyu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c7669-973d1711666de32af69ceefb233eb0cb29fbaac9039863f9d1ce43abcc4167383</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Antarctic Regions</topic><topic>Arthoniomycetes</topic><topic>Ascomycota</topic><topic>Biodiversity</topic><topic>Chlorophyta - classification</topic><topic>Cladonia</topic><topic>community structure</topic><topic>Cystobasidiomycetes</topic><topic>Ecosystem</topic><topic>ecosystems</topic><topic>Eurotiomycetes</topic><topic>fungal communities</topic><topic>fungi</topic><topic>Fungi - classification</topic><topic>genes</topic><topic>Genes, rRNA</topic><topic>Genotype</topic><topic>internal transcribed spacers</topic><topic>Lecanoromycetes</topic><topic>Leotiomycetes</topic><topic>lichen-associated fungi</topic><topic>lichens</topic><topic>Lichens - classification</topic><topic>Lichens - genetics</topic><topic>microalgae</topic><topic>Phylogeny</topic><topic>ribosomal RNA</topic><topic>Sequence Analysis, DNA</topic><topic>sequence homology</topic><topic>Sordariomycetes</topic><topic>thallus</topic><topic>Tremellomycetes</topic><topic>Umbilicaria</topic><topic>Usnea</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Park, Chae Haeng</creatorcontrib><creatorcontrib>Kim, Kyung Mo</creatorcontrib><creatorcontrib>Elvebakk, Arve</creatorcontrib><creatorcontrib>Kim, Ok‐Sun</creatorcontrib><creatorcontrib>Jeong, Gajin</creatorcontrib><creatorcontrib>Hong, Soon Gyu</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><jtitle>The Journal of eukaryotic microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Park, Chae Haeng</au><au>Kim, Kyung Mo</au><au>Elvebakk, Arve</au><au>Kim, Ok‐Sun</au><au>Jeong, Gajin</au><au>Hong, Soon Gyu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Algal and Fungal Diversity in Antarctic Lichens</atitle><jtitle>The Journal of eukaryotic microbiology</jtitle><addtitle>J. Eukaryot. Microbiol</addtitle><date>2015-03</date><risdate>2015</risdate><volume>62</volume><issue>2</issue><spage>196</spage><epage>205</epage><pages>196-205</pages><issn>1066-5234</issn><eissn>1550-7408</eissn><abstract>The composition of lichen ecosystems except mycobiont and photobiont has not been evaluated intensively. In addition, recent studies to identify algal genotypes have raised questions about the specific relationship between mycobiont and photobiont. In the current study, we analyzed algal and fungal community structures in lichen species from King George Island, Antarctica, by pyrosequencing of eukaryotic large subunit (LSU) and algal internal transcribed spacer (ITS) domains of the nuclear rRNA gene. The sequencing results of LSU and ITS regions indicated that each lichen thallus contained diverse algal species. The major algal operational taxonomic unit (OTU) defined at a 99% similarity cutoff of LSU sequences accounted for 78.7–100% of the total algal community in each sample. In several cases, the major OTUs defined by LSU sequences were represented by two closely related OTUs defined by 98% sequence similarity of ITS domain. The results of LSU sequences indicated that lichen‐associated fungi belonged to the Arthoniomycetes, Eurotiomycetes, Lecanoromycetes, Leotiomycetes, and Sordariomycetes of the Ascomycota, and Tremellomycetes and Cystobasidiomycetes of the Basidiomycota. The composition of major photobiont species and lichen‐associated fungal community were mostly related to the mycobiont species. The contribution of growth forms or substrates on composition of photobiont and lichen‐associated fungi was not evident.</abstract><cop>United States</cop><pub>Society of Protozoologists</pub><pmid>25105247</pmid><doi>10.1111/jeu.12159</doi><tpages>10</tpages></addata></record> |
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subjects | Antarctic Regions Arthoniomycetes Ascomycota Biodiversity Chlorophyta - classification Cladonia community structure Cystobasidiomycetes Ecosystem ecosystems Eurotiomycetes fungal communities fungi Fungi - classification genes Genes, rRNA Genotype internal transcribed spacers Lecanoromycetes Leotiomycetes lichen-associated fungi lichens Lichens - classification Lichens - genetics microalgae Phylogeny ribosomal RNA Sequence Analysis, DNA sequence homology Sordariomycetes thallus Tremellomycetes Umbilicaria Usnea |
title | Algal and Fungal Diversity in Antarctic Lichens |
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