Spatiotemporal spread of the 2014 outbreak of Ebola virus disease in Liberia and the effectiveness of non-pharmaceutical interventions: a computational modelling analysis
Summary Background The 2014 epidemic of Ebola virus disease in parts of west Africa defines an unprecedented health threat. We developed a model of Ebola virus transmission that integrates detailed geographical and demographic data from Liberia to overcome the limitations of non-spatial approaches i...
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creator | Merler, Stefano, MS Ajelli, Marco, PhD Fumanelli, Laura, PhD Gomes, Marcelo F C, PhD Piontti, Ana Pastore y, PhD Rossi, Luca, PhD Chao, Dennis L, PhD Longini, Ira M, Prof Halloran, M Elizabeth, Prof Vespignani, Alessandro, Prof |
description | Summary Background The 2014 epidemic of Ebola virus disease in parts of west Africa defines an unprecedented health threat. We developed a model of Ebola virus transmission that integrates detailed geographical and demographic data from Liberia to overcome the limitations of non-spatial approaches in projecting the disease dynamics and assessing non-pharmaceutical control interventions. Methods We modelled the movements of individuals, including patients not infected with Ebola virus, seeking assistance in health-care facilities, the movements of individuals taking care of patients infected with Ebola virus not admitted to hospital, and the attendance of funerals. Individuals were grouped into randomly assigned households (size based on Demographic Health Survey data) that were geographically placed to match population density estimates on a grid of 3157 cells covering the country. The spatial agent-based model was calibrated with a Markov chain Monte Carlo approach. The model was used to estimate Ebola virus transmission parameters and investigate the effectiveness of interventions such as availability of Ebola treatment units, safe burials procedures, and household protection kits. Findings Up to Aug 16, 2014, we estimated that 38·3% of infections (95% CI 17·4–76·4) were acquired in hospitals, 30·7% (14·1–46·4) in households, and 8·6% (3·2–11·8) while participating in funerals. We noted that the movement and mixing, in hospitals at the early stage of the epidemic, of patients infected with Ebola virus and those not infected was a sufficient driver of the reported pattern of spatial spread. The subsequent decrease of incidence at country and county level is attributable to the increasing availability of Ebola treatment units (which in turn contributed to drastically decreased hospital transmission), safe burials, and distribution of household protection kits. Interpretation The model allows assessment of intervention options and the understanding of their role in the decrease in incidence reported since Sept 7, 2014. High-quality data (eg, to estimate household secondary attack rate, contact patterns within hospitals, and effects of ongoing interventions) are needed to reduce uncertainty in model estimates. Funding US Defense Threat Reduction Agency, US National Institutes of Health. |
doi_str_mv | 10.1016/S1473-3099(14)71074-6 |
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We developed a model of Ebola virus transmission that integrates detailed geographical and demographic data from Liberia to overcome the limitations of non-spatial approaches in projecting the disease dynamics and assessing non-pharmaceutical control interventions. Methods We modelled the movements of individuals, including patients not infected with Ebola virus, seeking assistance in health-care facilities, the movements of individuals taking care of patients infected with Ebola virus not admitted to hospital, and the attendance of funerals. Individuals were grouped into randomly assigned households (size based on Demographic Health Survey data) that were geographically placed to match population density estimates on a grid of 3157 cells covering the country. The spatial agent-based model was calibrated with a Markov chain Monte Carlo approach. The model was used to estimate Ebola virus transmission parameters and investigate the effectiveness of interventions such as availability of Ebola treatment units, safe burials procedures, and household protection kits. Findings Up to Aug 16, 2014, we estimated that 38·3% of infections (95% CI 17·4–76·4) were acquired in hospitals, 30·7% (14·1–46·4) in households, and 8·6% (3·2–11·8) while participating in funerals. We noted that the movement and mixing, in hospitals at the early stage of the epidemic, of patients infected with Ebola virus and those not infected was a sufficient driver of the reported pattern of spatial spread. The subsequent decrease of incidence at country and county level is attributable to the increasing availability of Ebola treatment units (which in turn contributed to drastically decreased hospital transmission), safe burials, and distribution of household protection kits. Interpretation The model allows assessment of intervention options and the understanding of their role in the decrease in incidence reported since Sept 7, 2014. High-quality data (eg, to estimate household secondary attack rate, contact patterns within hospitals, and effects of ongoing interventions) are needed to reduce uncertainty in model estimates. Funding US Defense Threat Reduction Agency, US National Institutes of Health.</description><identifier>ISSN: 1473-3099</identifier><identifier>EISSN: 1474-4457</identifier><identifier>DOI: 10.1016/S1473-3099(14)71074-6</identifier><identifier>PMID: 25575618</identifier><identifier>CODEN: LANCAO</identifier><language>eng</language><publisher>United States: Elsevier Ltd</publisher><subject>Communicable Disease Control - methods ; Disease Outbreaks ; Disease transmission ; Disease Transmission, Infectious - prevention & control ; Ebola virus ; Epidemics ; Fatalities ; Funerals ; Health risks ; Hemorrhagic Fever, Ebola - epidemiology ; Hemorrhagic Fever, Ebola - prevention & control ; Hemorrhagic Fever, Ebola - transmission ; Hospitals ; Households ; Humans ; Infections ; Infectious Disease ; Infectious diseases ; Liberia - epidemiology ; Markov chains ; Models, Statistical ; Population ; Population density ; Spatio-Temporal Analysis</subject><ispartof>The Lancet infectious diseases, 2015-02, Vol.15 (2), p.204-211</ispartof><rights>Elsevier Ltd</rights><rights>2015 Elsevier Ltd</rights><rights>Copyright © 2015 Elsevier Ltd. All rights reserved.</rights><rights>Copyright Elsevier Limited Feb 2015</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c650t-4ef356d9befedd969ff0a92a812905509d5ef1365e7273cf5660c1ea3764273f3</citedby><cites>FETCH-LOGICAL-c650t-4ef356d9befedd969ff0a92a812905509d5ef1365e7273cf5660c1ea3764273f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1473309914710746$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25575618$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Merler, Stefano, MS</creatorcontrib><creatorcontrib>Ajelli, Marco, PhD</creatorcontrib><creatorcontrib>Fumanelli, Laura, PhD</creatorcontrib><creatorcontrib>Gomes, Marcelo F C, PhD</creatorcontrib><creatorcontrib>Piontti, Ana Pastore y, PhD</creatorcontrib><creatorcontrib>Rossi, Luca, PhD</creatorcontrib><creatorcontrib>Chao, Dennis L, PhD</creatorcontrib><creatorcontrib>Longini, Ira M, Prof</creatorcontrib><creatorcontrib>Halloran, M Elizabeth, Prof</creatorcontrib><creatorcontrib>Vespignani, Alessandro, Prof</creatorcontrib><title>Spatiotemporal spread of the 2014 outbreak of Ebola virus disease in Liberia and the effectiveness of non-pharmaceutical interventions: a computational modelling analysis</title><title>The Lancet infectious diseases</title><addtitle>Lancet Infect Dis</addtitle><description>Summary Background The 2014 epidemic of Ebola virus disease in parts of west Africa defines an unprecedented health threat. We developed a model of Ebola virus transmission that integrates detailed geographical and demographic data from Liberia to overcome the limitations of non-spatial approaches in projecting the disease dynamics and assessing non-pharmaceutical control interventions. Methods We modelled the movements of individuals, including patients not infected with Ebola virus, seeking assistance in health-care facilities, the movements of individuals taking care of patients infected with Ebola virus not admitted to hospital, and the attendance of funerals. Individuals were grouped into randomly assigned households (size based on Demographic Health Survey data) that were geographically placed to match population density estimates on a grid of 3157 cells covering the country. The spatial agent-based model was calibrated with a Markov chain Monte Carlo approach. The model was used to estimate Ebola virus transmission parameters and investigate the effectiveness of interventions such as availability of Ebola treatment units, safe burials procedures, and household protection kits. Findings Up to Aug 16, 2014, we estimated that 38·3% of infections (95% CI 17·4–76·4) were acquired in hospitals, 30·7% (14·1–46·4) in households, and 8·6% (3·2–11·8) while participating in funerals. We noted that the movement and mixing, in hospitals at the early stage of the epidemic, of patients infected with Ebola virus and those not infected was a sufficient driver of the reported pattern of spatial spread. The subsequent decrease of incidence at country and county level is attributable to the increasing availability of Ebola treatment units (which in turn contributed to drastically decreased hospital transmission), safe burials, and distribution of household protection kits. Interpretation The model allows assessment of intervention options and the understanding of their role in the decrease in incidence reported since Sept 7, 2014. High-quality data (eg, to estimate household secondary attack rate, contact patterns within hospitals, and effects of ongoing interventions) are needed to reduce uncertainty in model estimates. Funding US Defense Threat Reduction Agency, US National Institutes of Health.</description><subject>Communicable Disease Control - methods</subject><subject>Disease Outbreaks</subject><subject>Disease transmission</subject><subject>Disease Transmission, Infectious - prevention & control</subject><subject>Ebola virus</subject><subject>Epidemics</subject><subject>Fatalities</subject><subject>Funerals</subject><subject>Health risks</subject><subject>Hemorrhagic Fever, Ebola - epidemiology</subject><subject>Hemorrhagic Fever, Ebola - prevention & control</subject><subject>Hemorrhagic Fever, Ebola - transmission</subject><subject>Hospitals</subject><subject>Households</subject><subject>Humans</subject><subject>Infections</subject><subject>Infectious Disease</subject><subject>Infectious diseases</subject><subject>Liberia - epidemiology</subject><subject>Markov chains</subject><subject>Models, Statistical</subject><subject>Population</subject><subject>Population density</subject><subject>Spatio-Temporal Analysis</subject><issn>1473-3099</issn><issn>1474-4457</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkc1u1TAQhSMEoj_wCCBLbNpFwE5s55pFEarKj3QlFoW15dhj6jaxg51c6b4ST4l9U0DqBla2xt85M-NTVS8Ifk0w4W-uCe3ausVCnBF63hHc0Zo_qo5zmdaUsu7x4b4iR9VJSrcYk8zRp9VRw1jHONkcVz-vJzW7MMM4hagGlKYIyqBg0XwDqMGEorDMfS7eleJVHwaFdi4uCRmXQCVAzqOt6yE6hZQ3Bx1YC3p2O_CQUtH54OvpRsVRaVhmp3Mn52eImcjdfXqLFNJhnJa5TOPz8xgMDIPz37OpGvbJpWfVE6uGBM_vz9Pq24err5ef6u2Xj58v329rzRmeawq2ZdyIHiwYI7iwFivRqA1pBGYMC8PAkpYz6Jqu1ZZxjjUB1Xac5oJtT6uz1XeK4ccCaZajSzoPozyEJUnCORGiEZz8D4rbzUZscEZfPUBvwxLzaoWinJKmI8WQrZSOIaUIVk7RjSruJcGy5C4PucsSqiRUHnKXPOte3rsv_Qjmj-p30Bl4twKQf27nIMqkHXgNxsUclTTB_bPFxQMHneMpUd7BHtLfbWRqJF5Nikc-iwNvfwFVutOu</recordid><startdate>20150201</startdate><enddate>20150201</enddate><creator>Merler, Stefano, MS</creator><creator>Ajelli, Marco, PhD</creator><creator>Fumanelli, Laura, PhD</creator><creator>Gomes, Marcelo F C, PhD</creator><creator>Piontti, Ana Pastore y, PhD</creator><creator>Rossi, Luca, PhD</creator><creator>Chao, Dennis L, PhD</creator><creator>Longini, Ira M, Prof</creator><creator>Halloran, M Elizabeth, Prof</creator><creator>Vespignani, Alessandro, Prof</creator><general>Elsevier Ltd</general><general>Elsevier Limited</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>0TZ</scope><scope>3V.</scope><scope>7QL</scope><scope>7RV</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8C2</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>BENPR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H94</scope><scope>K9.</scope><scope>KB0</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>NAPCQ</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7T2</scope><scope>7U2</scope><scope>7X8</scope></search><sort><creationdate>20150201</creationdate><title>Spatiotemporal spread of the 2014 outbreak of Ebola virus disease in Liberia and the effectiveness of non-pharmaceutical interventions: a computational modelling analysis</title><author>Merler, Stefano, MS ; Ajelli, Marco, PhD ; Fumanelli, Laura, PhD ; Gomes, Marcelo F C, PhD ; Piontti, Ana Pastore y, PhD ; Rossi, Luca, PhD ; Chao, Dennis L, PhD ; Longini, Ira M, Prof ; Halloran, M Elizabeth, Prof ; Vespignani, Alessandro, Prof</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c650t-4ef356d9befedd969ff0a92a812905509d5ef1365e7273cf5660c1ea3764273f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Communicable Disease Control - methods</topic><topic>Disease Outbreaks</topic><topic>Disease transmission</topic><topic>Disease Transmission, Infectious - prevention & control</topic><topic>Ebola virus</topic><topic>Epidemics</topic><topic>Fatalities</topic><topic>Funerals</topic><topic>Health risks</topic><topic>Hemorrhagic Fever, Ebola - epidemiology</topic><topic>Hemorrhagic Fever, Ebola - prevention & control</topic><topic>Hemorrhagic Fever, Ebola - transmission</topic><topic>Hospitals</topic><topic>Households</topic><topic>Humans</topic><topic>Infections</topic><topic>Infectious Disease</topic><topic>Infectious diseases</topic><topic>Liberia - epidemiology</topic><topic>Markov chains</topic><topic>Models, Statistical</topic><topic>Population</topic><topic>Population density</topic><topic>Spatio-Temporal Analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Merler, Stefano, MS</creatorcontrib><creatorcontrib>Ajelli, Marco, PhD</creatorcontrib><creatorcontrib>Fumanelli, Laura, PhD</creatorcontrib><creatorcontrib>Gomes, Marcelo F C, PhD</creatorcontrib><creatorcontrib>Piontti, Ana Pastore y, PhD</creatorcontrib><creatorcontrib>Rossi, Luca, PhD</creatorcontrib><creatorcontrib>Chao, Dennis L, PhD</creatorcontrib><creatorcontrib>Longini, Ira M, Prof</creatorcontrib><creatorcontrib>Halloran, M Elizabeth, Prof</creatorcontrib><creatorcontrib>Vespignani, Alessandro, Prof</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Pharma and Biotech Premium PRO</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Proquest Nursing & Allied Health Source</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>ProQuest Public Health Database</collection><collection>Lancet Titles</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Nursing & Allied Health Premium</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Health and Safety Science Abstracts (Full archive)</collection><collection>Safety Science and Risk</collection><collection>MEDLINE - Academic</collection><jtitle>The Lancet infectious diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Merler, Stefano, MS</au><au>Ajelli, Marco, PhD</au><au>Fumanelli, Laura, PhD</au><au>Gomes, Marcelo F C, PhD</au><au>Piontti, Ana Pastore y, PhD</au><au>Rossi, Luca, PhD</au><au>Chao, Dennis L, PhD</au><au>Longini, Ira M, Prof</au><au>Halloran, M Elizabeth, Prof</au><au>Vespignani, Alessandro, Prof</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Spatiotemporal spread of the 2014 outbreak of Ebola virus disease in Liberia and the effectiveness of non-pharmaceutical interventions: a computational modelling analysis</atitle><jtitle>The Lancet infectious diseases</jtitle><addtitle>Lancet Infect Dis</addtitle><date>2015-02-01</date><risdate>2015</risdate><volume>15</volume><issue>2</issue><spage>204</spage><epage>211</epage><pages>204-211</pages><issn>1473-3099</issn><eissn>1474-4457</eissn><coden>LANCAO</coden><abstract>Summary Background The 2014 epidemic of Ebola virus disease in parts of west Africa defines an unprecedented health threat. We developed a model of Ebola virus transmission that integrates detailed geographical and demographic data from Liberia to overcome the limitations of non-spatial approaches in projecting the disease dynamics and assessing non-pharmaceutical control interventions. Methods We modelled the movements of individuals, including patients not infected with Ebola virus, seeking assistance in health-care facilities, the movements of individuals taking care of patients infected with Ebola virus not admitted to hospital, and the attendance of funerals. Individuals were grouped into randomly assigned households (size based on Demographic Health Survey data) that were geographically placed to match population density estimates on a grid of 3157 cells covering the country. The spatial agent-based model was calibrated with a Markov chain Monte Carlo approach. The model was used to estimate Ebola virus transmission parameters and investigate the effectiveness of interventions such as availability of Ebola treatment units, safe burials procedures, and household protection kits. Findings Up to Aug 16, 2014, we estimated that 38·3% of infections (95% CI 17·4–76·4) were acquired in hospitals, 30·7% (14·1–46·4) in households, and 8·6% (3·2–11·8) while participating in funerals. We noted that the movement and mixing, in hospitals at the early stage of the epidemic, of patients infected with Ebola virus and those not infected was a sufficient driver of the reported pattern of spatial spread. The subsequent decrease of incidence at country and county level is attributable to the increasing availability of Ebola treatment units (which in turn contributed to drastically decreased hospital transmission), safe burials, and distribution of household protection kits. Interpretation The model allows assessment of intervention options and the understanding of their role in the decrease in incidence reported since Sept 7, 2014. High-quality data (eg, to estimate household secondary attack rate, contact patterns within hospitals, and effects of ongoing interventions) are needed to reduce uncertainty in model estimates. Funding US Defense Threat Reduction Agency, US National Institutes of Health.</abstract><cop>United States</cop><pub>Elsevier Ltd</pub><pmid>25575618</pmid><doi>10.1016/S1473-3099(14)71074-6</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Communicable Disease Control - methods Disease Outbreaks Disease transmission Disease Transmission, Infectious - prevention & control Ebola virus Epidemics Fatalities Funerals Health risks Hemorrhagic Fever, Ebola - epidemiology Hemorrhagic Fever, Ebola - prevention & control Hemorrhagic Fever, Ebola - transmission Hospitals Households Humans Infections Infectious Disease Infectious diseases Liberia - epidemiology Markov chains Models, Statistical Population Population density Spatio-Temporal Analysis |
title | Spatiotemporal spread of the 2014 outbreak of Ebola virus disease in Liberia and the effectiveness of non-pharmaceutical interventions: a computational modelling analysis |
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