Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing
Marine metatranscriptome data was generated as part of a study investigating the bacterioplankton communities towards the end of a diatom-dominated spring phytoplankton bloom. This genomic resource article reports a metatranscriptomic dataset from amidst the winter time prior to the occurrence of th...
Gespeichert in:
| Veröffentlicht in: | Marine genomics 2015-02, Vol.19, p.45-46 |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 46 |
|---|---|
| container_issue | |
| container_start_page | 45 |
| container_title | Marine genomics |
| container_volume | 19 |
| creator | Kopf, Anna Kostadinov, Ivaylo Wichels, Antje Quast, Christian Glöckner, Frank Oliver |
| description | Marine metatranscriptome data was generated as part of a study investigating the bacterioplankton communities towards the end of a diatom-dominated spring phytoplankton bloom. This genomic resource article reports a metatranscriptomic dataset from amidst the winter time prior to the occurrence of the spring diatom bloom. Up to 58% of all sequences could be assigned to predicted genes. Taxonomic analysis based on expressed 16S ribosomal RNA genes identified Alphaproteobacteria and Gammaproteobacteria as the most active community members. |
| doi_str_mv | 10.1016/j.margen.2014.11.001 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1660659510</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S1874778714001469</els_id><sourcerecordid>1660659510</sourcerecordid><originalsourceid>FETCH-LOGICAL-c408t-204feb63c1c91147dc06339c13a9682e7d097973c61da4ab1bc7f3cd33c049673</originalsourceid><addsrcrecordid>eNp9kF9LXDEQxUNRqm77DYrk0Zd7m7nJJjcvBRGrBf-Ats8hN5mr2e7erEm2xW9v7K59FAZmGM6Zw_wI-QKsBQby66Jd2fSAU9sxEC1Ayxh8IIfQK9koofq9f7NolOrVATnKecGY7FTPPpKDbi6U1kIckqdrLLYkO2WXwrrEFdI40no5TEgH6wqmENdLO_0ucaJ-U_cP9G-Y6p6WUNVhouUR6U1M5ZHeo6U2Z6zl6fBMSyx2Se9uTmnGpw1Orro_kf3RLjN-3vUZ-fX9_OfZZXN1e_Hj7PSqcYL1pemYGHGQ3IHTAEJ5xyTn2gG3WvYdKs-00oo7Cd4KO8Dg1Mid59wxoaXiM3KyvbtOsWbnYlYhO1zWXzBusgEpmZzrObAqFVupSzHnhKNZp1AZPBtg5hW2WZgtbPMK2wCYCrvajncJm2GF_r_pjW4VfNsKsP75J2Ay2YVKAX1I6IrxMbyf8AK9rJNs</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1660659510</pqid></control><display><type>article</type><title>Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing</title><source>MEDLINE</source><source>Elsevier ScienceDirect Journals Complete</source><creator>Kopf, Anna ; Kostadinov, Ivaylo ; Wichels, Antje ; Quast, Christian ; Glöckner, Frank Oliver</creator><creatorcontrib>Kopf, Anna ; Kostadinov, Ivaylo ; Wichels, Antje ; Quast, Christian ; Glöckner, Frank Oliver</creatorcontrib><description>Marine metatranscriptome data was generated as part of a study investigating the bacterioplankton communities towards the end of a diatom-dominated spring phytoplankton bloom. This genomic resource article reports a metatranscriptomic dataset from amidst the winter time prior to the occurrence of the spring diatom bloom. Up to 58% of all sequences could be assigned to predicted genes. Taxonomic analysis based on expressed 16S ribosomal RNA genes identified Alphaproteobacteria and Gammaproteobacteria as the most active community members.</description><identifier>ISSN: 1874-7787</identifier><identifier>EISSN: 1876-7478</identifier><identifier>DOI: 10.1016/j.margen.2014.11.001</identifier><identifier>PMID: 25479944</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Bacteria - genetics ; Bacteria - metabolism ; Bacterioplankton ; Base Sequence ; CAZymes ; Eutrophication ; Membrane transporter ; Metatranscriptomics ; Molecular Sequence Data ; North Sea ; Plankton - genetics ; Plankton - metabolism ; Proteorhodopsin ; RNA, Ribosomal, 16S - genetics ; Seasons ; Sequence Analysis, RNA ; TonB ; Transcriptome</subject><ispartof>Marine genomics, 2015-02, Vol.19, p.45-46</ispartof><rights>2014 The Authors</rights><rights>Copyright © 2014. Published by Elsevier B.V.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c408t-204feb63c1c91147dc06339c13a9682e7d097973c61da4ab1bc7f3cd33c049673</citedby><cites>FETCH-LOGICAL-c408t-204feb63c1c91147dc06339c13a9682e7d097973c61da4ab1bc7f3cd33c049673</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1874778714001469$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65534</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25479944$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kopf, Anna</creatorcontrib><creatorcontrib>Kostadinov, Ivaylo</creatorcontrib><creatorcontrib>Wichels, Antje</creatorcontrib><creatorcontrib>Quast, Christian</creatorcontrib><creatorcontrib>Glöckner, Frank Oliver</creatorcontrib><title>Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing</title><title>Marine genomics</title><addtitle>Mar Genomics</addtitle><description>Marine metatranscriptome data was generated as part of a study investigating the bacterioplankton communities towards the end of a diatom-dominated spring phytoplankton bloom. This genomic resource article reports a metatranscriptomic dataset from amidst the winter time prior to the occurrence of the spring diatom bloom. Up to 58% of all sequences could be assigned to predicted genes. Taxonomic analysis based on expressed 16S ribosomal RNA genes identified Alphaproteobacteria and Gammaproteobacteria as the most active community members.</description><subject>Bacteria - genetics</subject><subject>Bacteria - metabolism</subject><subject>Bacterioplankton</subject><subject>Base Sequence</subject><subject>CAZymes</subject><subject>Eutrophication</subject><subject>Membrane transporter</subject><subject>Metatranscriptomics</subject><subject>Molecular Sequence Data</subject><subject>North Sea</subject><subject>Plankton - genetics</subject><subject>Plankton - metabolism</subject><subject>Proteorhodopsin</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Seasons</subject><subject>Sequence Analysis, RNA</subject><subject>TonB</subject><subject>Transcriptome</subject><issn>1874-7787</issn><issn>1876-7478</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kF9LXDEQxUNRqm77DYrk0Zd7m7nJJjcvBRGrBf-Ats8hN5mr2e7erEm2xW9v7K59FAZmGM6Zw_wI-QKsBQby66Jd2fSAU9sxEC1Ayxh8IIfQK9koofq9f7NolOrVATnKecGY7FTPPpKDbi6U1kIckqdrLLYkO2WXwrrEFdI40no5TEgH6wqmENdLO_0ucaJ-U_cP9G-Y6p6WUNVhouUR6U1M5ZHeo6U2Z6zl6fBMSyx2Se9uTmnGpw1Orro_kf3RLjN-3vUZ-fX9_OfZZXN1e_Hj7PSqcYL1pemYGHGQ3IHTAEJ5xyTn2gG3WvYdKs-00oo7Cd4KO8Dg1Mid59wxoaXiM3KyvbtOsWbnYlYhO1zWXzBusgEpmZzrObAqFVupSzHnhKNZp1AZPBtg5hW2WZgtbPMK2wCYCrvajncJm2GF_r_pjW4VfNsKsP75J2Ay2YVKAX1I6IrxMbyf8AK9rJNs</recordid><startdate>20150201</startdate><enddate>20150201</enddate><creator>Kopf, Anna</creator><creator>Kostadinov, Ivaylo</creator><creator>Wichels, Antje</creator><creator>Quast, Christian</creator><creator>Glöckner, Frank Oliver</creator><general>Elsevier B.V</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20150201</creationdate><title>Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing</title><author>Kopf, Anna ; Kostadinov, Ivaylo ; Wichels, Antje ; Quast, Christian ; Glöckner, Frank Oliver</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c408t-204feb63c1c91147dc06339c13a9682e7d097973c61da4ab1bc7f3cd33c049673</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Bacteria - genetics</topic><topic>Bacteria - metabolism</topic><topic>Bacterioplankton</topic><topic>Base Sequence</topic><topic>CAZymes</topic><topic>Eutrophication</topic><topic>Membrane transporter</topic><topic>Metatranscriptomics</topic><topic>Molecular Sequence Data</topic><topic>North Sea</topic><topic>Plankton - genetics</topic><topic>Plankton - metabolism</topic><topic>Proteorhodopsin</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Seasons</topic><topic>Sequence Analysis, RNA</topic><topic>TonB</topic><topic>Transcriptome</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kopf, Anna</creatorcontrib><creatorcontrib>Kostadinov, Ivaylo</creatorcontrib><creatorcontrib>Wichels, Antje</creatorcontrib><creatorcontrib>Quast, Christian</creatorcontrib><creatorcontrib>Glöckner, Frank Oliver</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Marine genomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kopf, Anna</au><au>Kostadinov, Ivaylo</au><au>Wichels, Antje</au><au>Quast, Christian</au><au>Glöckner, Frank Oliver</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing</atitle><jtitle>Marine genomics</jtitle><addtitle>Mar Genomics</addtitle><date>2015-02-01</date><risdate>2015</risdate><volume>19</volume><spage>45</spage><epage>46</epage><pages>45-46</pages><issn>1874-7787</issn><eissn>1876-7478</eissn><abstract>Marine metatranscriptome data was generated as part of a study investigating the bacterioplankton communities towards the end of a diatom-dominated spring phytoplankton bloom. This genomic resource article reports a metatranscriptomic dataset from amidst the winter time prior to the occurrence of the spring diatom bloom. Up to 58% of all sequences could be assigned to predicted genes. Taxonomic analysis based on expressed 16S ribosomal RNA genes identified Alphaproteobacteria and Gammaproteobacteria as the most active community members.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>25479944</pmid><doi>10.1016/j.margen.2014.11.001</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1874-7787 |
| ispartof | Marine genomics, 2015-02, Vol.19, p.45-46 |
| issn | 1874-7787 1876-7478 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1660659510 |
| source | MEDLINE; Elsevier ScienceDirect Journals Complete |
| subjects | Bacteria - genetics Bacteria - metabolism Bacterioplankton Base Sequence CAZymes Eutrophication Membrane transporter Metatranscriptomics Molecular Sequence Data North Sea Plankton - genetics Plankton - metabolism Proteorhodopsin RNA, Ribosomal, 16S - genetics Seasons Sequence Analysis, RNA TonB Transcriptome |
| title | Metatranscriptome of marine bacterioplankton during winter time in the North Sea assessed by total RNA sequencing |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-18T23%3A07%3A06IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Metatranscriptome%20of%20marine%20bacterioplankton%20during%20winter%20time%20in%20the%20North%20Sea%20assessed%20by%20total%20RNA%20sequencing&rft.jtitle=Marine%20genomics&rft.au=Kopf,%20Anna&rft.date=2015-02-01&rft.volume=19&rft.spage=45&rft.epage=46&rft.pages=45-46&rft.issn=1874-7787&rft.eissn=1876-7478&rft_id=info:doi/10.1016/j.margen.2014.11.001&rft_dat=%3Cproquest_cross%3E1660659510%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1660659510&rft_id=info:pmid/25479944&rft_els_id=S1874778714001469&rfr_iscdi=true |