Methylotrophy in the thermophilic Bacillus methanolicus, basic insights and application for commodity production from methanol
Using methanol as an alternative non-food feedstock for biotechnological production offers several advantages in line with a methanol-based bioeconomy. The Gram-positive, facultative methylotrophic and thermophilic bacterium Bacillus methanolicus is one of the few described microbial candidates with...
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description | Using methanol as an alternative non-food feedstock for biotechnological production offers several advantages in line with a methanol-based bioeconomy. The Gram-positive, facultative methylotrophic and thermophilic bacterium Bacillus methanolicus is one of the few described microbial candidates with a potential for the conversion of methanol to value-added products. Its capabilities of producing and secreting the commercially important amino acids L-glutamate and L-lysine to high concentrations at 50 °C have been demonstrated and make B. methanolicus a promising target to develop cell factories for industrial-scale production processes. B. methanolicus uses the ribulose monophosphate cycle for methanol assimilation and represents the first example of plasmid-dependent methylotrophy. Recent genome sequencing of two physiologically different wild-type B. methanolicus strains, MGA3 and PB1, accompanied with transcriptome and proteome analyses has generated fundamental new insight into the metabolism of the species. In addition, multiple key enzymes representing methylotrophic and biosynthetic pathways have been biochemically characterized. All this, together with establishment of improved tools for gene expression, has opened opportunities for systems-level metabolic engineering of B. methanolicus. Here, we summarize the current status of its metabolism and biochemistry, available genetic tools, and its potential use in respect to overproduction of amino acids. |
doi_str_mv | 10.1007/s00253-014-6224-3 |
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N ; Heggeset, Tonje M. B ; Wendisch, Volker F ; Vorholt, Julia A ; Brautaset, Trygve</creator><creatorcontrib>Müller, Jonas E. N ; Heggeset, Tonje M. B ; Wendisch, Volker F ; Vorholt, Julia A ; Brautaset, Trygve</creatorcontrib><description>Using methanol as an alternative non-food feedstock for biotechnological production offers several advantages in line with a methanol-based bioeconomy. The Gram-positive, facultative methylotrophic and thermophilic bacterium Bacillus methanolicus is one of the few described microbial candidates with a potential for the conversion of methanol to value-added products. Its capabilities of producing and secreting the commercially important amino acids L-glutamate and L-lysine to high concentrations at 50 °C have been demonstrated and make B. methanolicus a promising target to develop cell factories for industrial-scale production processes. B. methanolicus uses the ribulose monophosphate cycle for methanol assimilation and represents the first example of plasmid-dependent methylotrophy. Recent genome sequencing of two physiologically different wild-type B. methanolicus strains, MGA3 and PB1, accompanied with transcriptome and proteome analyses has generated fundamental new insight into the metabolism of the species. In addition, multiple key enzymes representing methylotrophic and biosynthetic pathways have been biochemically characterized. All this, together with establishment of improved tools for gene expression, has opened opportunities for systems-level metabolic engineering of B. methanolicus. Here, we summarize the current status of its metabolism and biochemistry, available genetic tools, and its potential use in respect to overproduction of amino acids.</description><identifier>ISSN: 0175-7598</identifier><identifier>EISSN: 1432-0614</identifier><identifier>DOI: 10.1007/s00253-014-6224-3</identifier><identifier>PMID: 25431011</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer-Verlag</publisher><subject>Amino acids ; Bacillus ; Bacillus (Bacteria) ; Bacillus - genetics ; Bacillus - metabolism ; Bacillus methanolicus ; biochemical pathways ; Biomedical and Life Sciences ; Biosynthesis ; Biotechnology ; Carbon ; Cooling ; DNA sequencing ; DNA, Bacterial - genetics ; Enzymes ; feedstocks ; Food ; Gene expression ; Genetic aspects ; Genome, Bacterial ; Genomes ; glutamic acid ; Glutamic Acid - biosynthesis ; Hot Temperature ; Life Sciences ; lysine ; Lysine - biosynthesis ; metabolic engineering ; Metabolism ; Methanol ; Methanol - metabolism ; Methods ; Microbial Genetics and Genomics ; Microbiology ; Microorganisms ; Mini-Review ; Natural gas ; Observations ; Plasmids - genetics ; Production capacity ; Production increases ; Promoter Regions, Genetic ; Properties ; proteome ; Proteome - metabolism ; Proteomics ; Raw materials ; ribulose ; sequence analysis ; Sequence Analysis, DNA ; Studies ; thermophilic bacteria ; transcriptome ; value-added products</subject><ispartof>Applied microbiology and biotechnology, 2015-01, Vol.99 (2), p.535-551</ispartof><rights>Springer-Verlag Berlin Heidelberg 2014</rights><rights>COPYRIGHT 2015 Springer</rights><rights>Springer-Verlag Berlin Heidelberg 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c738t-eedcaca960c529d523db9a8b66933f831b817d814fb0ccf2c659b909ff053f803</citedby><cites>FETCH-LOGICAL-c738t-eedcaca960c529d523db9a8b66933f831b817d814fb0ccf2c659b909ff053f803</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00253-014-6224-3$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00253-014-6224-3$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25431011$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Müller, Jonas E. N</creatorcontrib><creatorcontrib>Heggeset, Tonje M. B</creatorcontrib><creatorcontrib>Wendisch, Volker F</creatorcontrib><creatorcontrib>Vorholt, Julia A</creatorcontrib><creatorcontrib>Brautaset, Trygve</creatorcontrib><title>Methylotrophy in the thermophilic Bacillus methanolicus, basic insights and application for commodity production from methanol</title><title>Applied microbiology and biotechnology</title><addtitle>Appl Microbiol Biotechnol</addtitle><addtitle>Appl Microbiol Biotechnol</addtitle><description>Using methanol as an alternative non-food feedstock for biotechnological production offers several advantages in line with a methanol-based bioeconomy. The Gram-positive, facultative methylotrophic and thermophilic bacterium Bacillus methanolicus is one of the few described microbial candidates with a potential for the conversion of methanol to value-added products. Its capabilities of producing and secreting the commercially important amino acids L-glutamate and L-lysine to high concentrations at 50 °C have been demonstrated and make B. methanolicus a promising target to develop cell factories for industrial-scale production processes. B. methanolicus uses the ribulose monophosphate cycle for methanol assimilation and represents the first example of plasmid-dependent methylotrophy. Recent genome sequencing of two physiologically different wild-type B. methanolicus strains, MGA3 and PB1, accompanied with transcriptome and proteome analyses has generated fundamental new insight into the metabolism of the species. In addition, multiple key enzymes representing methylotrophic and biosynthetic pathways have been biochemically characterized. All this, together with establishment of improved tools for gene expression, has opened opportunities for systems-level metabolic engineering of B. methanolicus. Here, we summarize the current status of its metabolism and biochemistry, available genetic tools, and its potential use in respect to overproduction of amino acids.</description><subject>Amino acids</subject><subject>Bacillus</subject><subject>Bacillus (Bacteria)</subject><subject>Bacillus - genetics</subject><subject>Bacillus - metabolism</subject><subject>Bacillus methanolicus</subject><subject>biochemical pathways</subject><subject>Biomedical and Life Sciences</subject><subject>Biosynthesis</subject><subject>Biotechnology</subject><subject>Carbon</subject><subject>Cooling</subject><subject>DNA sequencing</subject><subject>DNA, Bacterial - genetics</subject><subject>Enzymes</subject><subject>feedstocks</subject><subject>Food</subject><subject>Gene expression</subject><subject>Genetic aspects</subject><subject>Genome, Bacterial</subject><subject>Genomes</subject><subject>glutamic acid</subject><subject>Glutamic Acid - biosynthesis</subject><subject>Hot Temperature</subject><subject>Life Sciences</subject><subject>lysine</subject><subject>Lysine - biosynthesis</subject><subject>metabolic engineering</subject><subject>Metabolism</subject><subject>Methanol</subject><subject>Methanol - metabolism</subject><subject>Methods</subject><subject>Microbial Genetics and Genomics</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Mini-Review</subject><subject>Natural gas</subject><subject>Observations</subject><subject>Plasmids - genetics</subject><subject>Production capacity</subject><subject>Production increases</subject><subject>Promoter Regions, Genetic</subject><subject>Properties</subject><subject>proteome</subject><subject>Proteome - metabolism</subject><subject>Proteomics</subject><subject>Raw materials</subject><subject>ribulose</subject><subject>sequence analysis</subject><subject>Sequence Analysis, DNA</subject><subject>Studies</subject><subject>thermophilic bacteria</subject><subject>transcriptome</subject><subject>value-added products</subject><issn>0175-7598</issn><issn>1432-0614</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNk12L1DAUhoMo7jj6A7zRgjcKdj35bHO5Ln4srAiuex3SNO1kaZvZpAXnxt9uStd1RmRdSimc9zlvepI3CD3HcIwBincRgHCaA2a5IITl9AFaYUZJDgKzh2gFuOB5wWV5hJ7EeAWASSnEY3REOKMYMF6hn1_suNl1fgx-u9llbsjGjZ3f0KeC65zJ3mvjum6KWZ9QPfhUm-LbrNIxiW6Irt2MMdNDnentNol6dH7IGh8y4_ve127cZdvg68ksQvD9rdVT9KjRXbTPbr5rdPnxw_fTz_n5109npyfnuSloOebW1kYbLQUYTmTNCa0rqctKCElpU1JclbioS8yaCoxpiBFcVhJk0wBPOtA1er34ph-5nmwcVe-isV2nB-unqLAQwCgHye-BcsIIlnRGX_2FXvkpDGmQRLGSUCwL8YdqdWeVG5q02drMpuqEFWkEIQncTWHgwGWadY2O_0Glp7a9M36wjUv1A9v7Neyt8OagITGj_TG2eopRnV18OzT_L7vnixfWBB9jsI3aBtfrsFMY1JxmtaRZpTSrOc1q7nlxs79T1dv6tuN3fBNAFiAmaWht2DuAO1xfLk2N9kq3wUV1eUEA83Q_GBcg6C8ocQUx</recordid><startdate>20150101</startdate><enddate>20150101</enddate><creator>Müller, Jonas E. 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The Gram-positive, facultative methylotrophic and thermophilic bacterium Bacillus methanolicus is one of the few described microbial candidates with a potential for the conversion of methanol to value-added products. Its capabilities of producing and secreting the commercially important amino acids L-glutamate and L-lysine to high concentrations at 50 °C have been demonstrated and make B. methanolicus a promising target to develop cell factories for industrial-scale production processes. B. methanolicus uses the ribulose monophosphate cycle for methanol assimilation and represents the first example of plasmid-dependent methylotrophy. Recent genome sequencing of two physiologically different wild-type B. methanolicus strains, MGA3 and PB1, accompanied with transcriptome and proteome analyses has generated fundamental new insight into the metabolism of the species. In addition, multiple key enzymes representing methylotrophic and biosynthetic pathways have been biochemically characterized. All this, together with establishment of improved tools for gene expression, has opened opportunities for systems-level metabolic engineering of B. methanolicus. Here, we summarize the current status of its metabolism and biochemistry, available genetic tools, and its potential use in respect to overproduction of amino acids.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer-Verlag</pub><pmid>25431011</pmid><doi>10.1007/s00253-014-6224-3</doi><tpages>17</tpages></addata></record> |
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subjects | Amino acids Bacillus Bacillus (Bacteria) Bacillus - genetics Bacillus - metabolism Bacillus methanolicus biochemical pathways Biomedical and Life Sciences Biosynthesis Biotechnology Carbon Cooling DNA sequencing DNA, Bacterial - genetics Enzymes feedstocks Food Gene expression Genetic aspects Genome, Bacterial Genomes glutamic acid Glutamic Acid - biosynthesis Hot Temperature Life Sciences lysine Lysine - biosynthesis metabolic engineering Metabolism Methanol Methanol - metabolism Methods Microbial Genetics and Genomics Microbiology Microorganisms Mini-Review Natural gas Observations Plasmids - genetics Production capacity Production increases Promoter Regions, Genetic Properties proteome Proteome - metabolism Proteomics Raw materials ribulose sequence analysis Sequence Analysis, DNA Studies thermophilic bacteria transcriptome value-added products |
title | Methylotrophy in the thermophilic Bacillus methanolicus, basic insights and application for commodity production from methanol |
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