QTL mapping for economically important traits of common carp (Cyprinus carpio L.)
Quantitative trait loci (QTL) were analyzed for three economically important traits, i.e., body weight (BW), body length (BL), and body thickness (BT), in an F1 family of common carp holding the 190 progeny. A genetic linkage map spanning 3,301 cM in 50 linkage groups with 627 markers and an average...
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| Veröffentlicht in: | Journal of applied genetics 2015-02, Vol.56 (1), p.65-75 |
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| creator | Laghari, Muhammad Younis Lashari, Punhal Zhang, Xiaofeng Xu, Peng Narejo, Naeem Tariq Xin, Baoping Zhang, Yan Sun, Xiaowen |
| description | Quantitative trait loci (QTL) were analyzed for three economically important traits, i.e., body weight (BW), body length (BL), and body thickness (BT), in an F1 family of common carp holding the 190 progeny. A genetic linkage map spanning 3,301 cM in 50 linkage groups with 627 markers and an average distance of 5.6 cM was utilized for QTL mapping. Sixteen QTLs associated with all three growth-related traits were scattered across ten linkage groups, LG6, LG10, LG17, LG19, LG25, LG27, LG28, LG29, LG30, and LG39. Six QTLs for BW and five each for BL and BT explained phenotypic variance in the range 17.0–32.1 %. All the nearest markers of QTLs were found to be significantly (p ≤ 0.05) related with the trait. Among these QTLs, a total of four, two (qBW30 and qBW39) related with BW, one (qBL39) associated with BL, and one (qBT29) related to BT, were found to be the major QTLs with a phenotypic variance of >20 %. qBW30 and qBW39 with the nearest markers HLJ1691 and HLJ1843, respectively, show significant values of 0.0038 and 0.0031, correspondingly. QTLs qBL39 and qBT29 were found to have significant values of 0.0047 and 0.0015, respectively. Three QTLs (qBW27, qBW30, qBW39) of BW, two for BL (qBL19, qBL39), and two for BT (qBT6, qBT25) found in this study were similar to populations with different genetic backgrounds. In this study, the genomic region controlling economically important traits were located. These genomic regions will be the major sources for the discovery of important genes and pathways associated with growth-related traits in common carp. |
| doi_str_mv | 10.1007/s13353-014-0232-y |
| format | Article |
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A genetic linkage map spanning 3,301 cM in 50 linkage groups with 627 markers and an average distance of 5.6 cM was utilized for QTL mapping. Sixteen QTLs associated with all three growth-related traits were scattered across ten linkage groups, LG6, LG10, LG17, LG19, LG25, LG27, LG28, LG29, LG30, and LG39. Six QTLs for BW and five each for BL and BT explained phenotypic variance in the range 17.0–32.1 %. All the nearest markers of QTLs were found to be significantly (p ≤ 0.05) related with the trait. Among these QTLs, a total of four, two (qBW30 and qBW39) related with BW, one (qBL39) associated with BL, and one (qBT29) related to BT, were found to be the major QTLs with a phenotypic variance of >20 %. qBW30 and qBW39 with the nearest markers HLJ1691 and HLJ1843, respectively, show significant values of 0.0038 and 0.0031, correspondingly. QTLs qBL39 and qBT29 were found to have significant values of 0.0047 and 0.0015, respectively. Three QTLs (qBW27, qBW30, qBW39) of BW, two for BL (qBL19, qBL39), and two for BT (qBT6, qBT25) found in this study were similar to populations with different genetic backgrounds. In this study, the genomic region controlling economically important traits were located. These genomic regions will be the major sources for the discovery of important genes and pathways associated with growth-related traits in common carp.</description><identifier>ISSN: 1234-1983</identifier><identifier>EISSN: 2190-3883</identifier><identifier>DOI: 10.1007/s13353-014-0232-y</identifier><identifier>PMID: 25078056</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer-Verlag</publisher><subject>Analysis ; Animal Genetics and Genomics ; Animal Genetics • Original Paper ; Animals ; Biomedical and Life Sciences ; body length ; body weight ; Carps - genetics ; Carps - growth & development ; Chromosome Mapping ; Cyprinus carpio ; Fishes ; Genes ; Genetic aspects ; Genetic Linkage ; Human Genetics ; Life Sciences ; linkage groups ; Microbial Genetics and Genomics ; Phenotype ; phenotypic variation ; Plant Genetics and Genomics ; progeny ; Quantitative genetics ; Quantitative Trait Loci</subject><ispartof>Journal of applied genetics, 2015-02, Vol.56 (1), p.65-75</ispartof><rights>Institute of Plant Genetics, Polish Academy of Sciences, Poznan 2014</rights><rights>COPYRIGHT 2015 Springer</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c538t-b6263a2a28bcbb81df3fb4db800b8cfc8e8007216a8c134e188f36584f0c4a23</citedby><cites>FETCH-LOGICAL-c538t-b6263a2a28bcbb81df3fb4db800b8cfc8e8007216a8c134e188f36584f0c4a23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s13353-014-0232-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s13353-014-0232-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,777,781,27905,27906,41469,42538,51300</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25078056$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Laghari, Muhammad Younis</creatorcontrib><creatorcontrib>Lashari, Punhal</creatorcontrib><creatorcontrib>Zhang, Xiaofeng</creatorcontrib><creatorcontrib>Xu, Peng</creatorcontrib><creatorcontrib>Narejo, Naeem Tariq</creatorcontrib><creatorcontrib>Xin, Baoping</creatorcontrib><creatorcontrib>Zhang, Yan</creatorcontrib><creatorcontrib>Sun, Xiaowen</creatorcontrib><title>QTL mapping for economically important traits of common carp (Cyprinus carpio L.)</title><title>Journal of applied genetics</title><addtitle>J Appl Genetics</addtitle><addtitle>J Appl Genet</addtitle><description>Quantitative trait loci (QTL) were analyzed for three economically important traits, i.e., body weight (BW), body length (BL), and body thickness (BT), in an F1 family of common carp holding the 190 progeny. A genetic linkage map spanning 3,301 cM in 50 linkage groups with 627 markers and an average distance of 5.6 cM was utilized for QTL mapping. Sixteen QTLs associated with all three growth-related traits were scattered across ten linkage groups, LG6, LG10, LG17, LG19, LG25, LG27, LG28, LG29, LG30, and LG39. Six QTLs for BW and five each for BL and BT explained phenotypic variance in the range 17.0–32.1 %. All the nearest markers of QTLs were found to be significantly (p ≤ 0.05) related with the trait. Among these QTLs, a total of four, two (qBW30 and qBW39) related with BW, one (qBL39) associated with BL, and one (qBT29) related to BT, were found to be the major QTLs with a phenotypic variance of >20 %. qBW30 and qBW39 with the nearest markers HLJ1691 and HLJ1843, respectively, show significant values of 0.0038 and 0.0031, correspondingly. QTLs qBL39 and qBT29 were found to have significant values of 0.0047 and 0.0015, respectively. Three QTLs (qBW27, qBW30, qBW39) of BW, two for BL (qBL19, qBL39), and two for BT (qBT6, qBT25) found in this study were similar to populations with different genetic backgrounds. In this study, the genomic region controlling economically important traits were located. These genomic regions will be the major sources for the discovery of important genes and pathways associated with growth-related traits in common carp.</description><subject>Analysis</subject><subject>Animal Genetics and Genomics</subject><subject>Animal Genetics • Original Paper</subject><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>body length</subject><subject>body weight</subject><subject>Carps - genetics</subject><subject>Carps - growth & development</subject><subject>Chromosome Mapping</subject><subject>Cyprinus carpio</subject><subject>Fishes</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Genetic Linkage</subject><subject>Human Genetics</subject><subject>Life Sciences</subject><subject>linkage groups</subject><subject>Microbial Genetics and Genomics</subject><subject>Phenotype</subject><subject>phenotypic variation</subject><subject>Plant Genetics and Genomics</subject><subject>progeny</subject><subject>Quantitative genetics</subject><subject>Quantitative Trait Loci</subject><issn>1234-1983</issn><issn>2190-3883</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kU9r3DAQxUVpaLZpP0AvraCX9ODNSGPL8jEs_RNYKKHbs5C10qJgW65kH_zto43TQqEUHaQRvzfMvEfIOwZbBlDfJIZYYQGsLIAjL5YXZMNZAwVKiS_JhnEsC9ZIvCSvU3oAQFnW_BW55BXUEiqxIff3hz3t9Tj64URdiNSaMITeG911C_X9GOKkh4lOUfsp0eCoCX0fBmp0HOn1bhmjH-b0VPpA99tPb8iF012yb5_vK3L48vmw-1bsv3-9293uC1OhnIpWcIGaay5b07aSHR26tjy2EqCVxhlp86vmTGhpGJaWSelQVLJ0YErN8Ypcr23HGH7NNk2q98nYrtODDXNSTAgoERshMvpxRU-6s8oPLuRtzBlXtzWDGhGBZWr7Dyqfo812hME6n___ErBVYGJIKVqnshe9jotioM75qDUflfNR53zUkjXvn6ee294e_yh-B5IBvgLpbOzJRvUQ5jhkI__b9cMqcjoofYo-qZ8_OLAKAJq6QYaP0u6iUA</recordid><startdate>20150201</startdate><enddate>20150201</enddate><creator>Laghari, Muhammad Younis</creator><creator>Lashari, Punhal</creator><creator>Zhang, Xiaofeng</creator><creator>Xu, Peng</creator><creator>Narejo, Naeem Tariq</creator><creator>Xin, Baoping</creator><creator>Zhang, Yan</creator><creator>Sun, Xiaowen</creator><general>Springer-Verlag</general><general>Springer Berlin Heidelberg</general><general>Springer</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20150201</creationdate><title>QTL mapping for economically important traits of common carp (Cyprinus carpio L.)</title><author>Laghari, Muhammad Younis ; Lashari, Punhal ; Zhang, Xiaofeng ; Xu, Peng ; Narejo, Naeem Tariq ; Xin, Baoping ; Zhang, Yan ; Sun, Xiaowen</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c538t-b6263a2a28bcbb81df3fb4db800b8cfc8e8007216a8c134e188f36584f0c4a23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Analysis</topic><topic>Animal Genetics and Genomics</topic><topic>Animal Genetics • Original Paper</topic><topic>Animals</topic><topic>Biomedical and Life Sciences</topic><topic>body length</topic><topic>body weight</topic><topic>Carps - genetics</topic><topic>Carps - growth & development</topic><topic>Chromosome Mapping</topic><topic>Cyprinus carpio</topic><topic>Fishes</topic><topic>Genes</topic><topic>Genetic aspects</topic><topic>Genetic Linkage</topic><topic>Human Genetics</topic><topic>Life Sciences</topic><topic>linkage groups</topic><topic>Microbial Genetics and Genomics</topic><topic>Phenotype</topic><topic>phenotypic variation</topic><topic>Plant Genetics and Genomics</topic><topic>progeny</topic><topic>Quantitative genetics</topic><topic>Quantitative Trait Loci</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Laghari, Muhammad Younis</creatorcontrib><creatorcontrib>Lashari, Punhal</creatorcontrib><creatorcontrib>Zhang, Xiaofeng</creatorcontrib><creatorcontrib>Xu, Peng</creatorcontrib><creatorcontrib>Narejo, Naeem Tariq</creatorcontrib><creatorcontrib>Xin, Baoping</creatorcontrib><creatorcontrib>Zhang, Yan</creatorcontrib><creatorcontrib>Sun, Xiaowen</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Journal of applied genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Laghari, Muhammad Younis</au><au>Lashari, Punhal</au><au>Zhang, Xiaofeng</au><au>Xu, Peng</au><au>Narejo, Naeem Tariq</au><au>Xin, Baoping</au><au>Zhang, Yan</au><au>Sun, Xiaowen</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>QTL mapping for economically important traits of common carp (Cyprinus carpio L.)</atitle><jtitle>Journal of applied genetics</jtitle><stitle>J Appl Genetics</stitle><addtitle>J Appl Genet</addtitle><date>2015-02-01</date><risdate>2015</risdate><volume>56</volume><issue>1</issue><spage>65</spage><epage>75</epage><pages>65-75</pages><issn>1234-1983</issn><eissn>2190-3883</eissn><abstract>Quantitative trait loci (QTL) were analyzed for three economically important traits, i.e., body weight (BW), body length (BL), and body thickness (BT), in an F1 family of common carp holding the 190 progeny. A genetic linkage map spanning 3,301 cM in 50 linkage groups with 627 markers and an average distance of 5.6 cM was utilized for QTL mapping. Sixteen QTLs associated with all three growth-related traits were scattered across ten linkage groups, LG6, LG10, LG17, LG19, LG25, LG27, LG28, LG29, LG30, and LG39. Six QTLs for BW and five each for BL and BT explained phenotypic variance in the range 17.0–32.1 %. All the nearest markers of QTLs were found to be significantly (p ≤ 0.05) related with the trait. Among these QTLs, a total of four, two (qBW30 and qBW39) related with BW, one (qBL39) associated with BL, and one (qBT29) related to BT, were found to be the major QTLs with a phenotypic variance of >20 %. qBW30 and qBW39 with the nearest markers HLJ1691 and HLJ1843, respectively, show significant values of 0.0038 and 0.0031, correspondingly. QTLs qBL39 and qBT29 were found to have significant values of 0.0047 and 0.0015, respectively. Three QTLs (qBW27, qBW30, qBW39) of BW, two for BL (qBL19, qBL39), and two for BT (qBT6, qBT25) found in this study were similar to populations with different genetic backgrounds. In this study, the genomic region controlling economically important traits were located. These genomic regions will be the major sources for the discovery of important genes and pathways associated with growth-related traits in common carp.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer-Verlag</pub><pmid>25078056</pmid><doi>10.1007/s13353-014-0232-y</doi><tpages>11</tpages></addata></record> |
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| subjects | Analysis Animal Genetics and Genomics Animal Genetics • Original Paper Animals Biomedical and Life Sciences body length body weight Carps - genetics Carps - growth & development Chromosome Mapping Cyprinus carpio Fishes Genes Genetic aspects Genetic Linkage Human Genetics Life Sciences linkage groups Microbial Genetics and Genomics Phenotype phenotypic variation Plant Genetics and Genomics progeny Quantitative genetics Quantitative Trait Loci |
| title | QTL mapping for economically important traits of common carp (Cyprinus carpio L.) |
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