Rhodococcus soli sp. nov., an actinobacterium isolated from soil using a resuscitative technique
A Gram-positive, aerobic, non-motile, non-spore forming strain, designated DSD51Wᵀ, was isolated using a resuscitative technique from a soil sample collected from Kyoto park, Japan, and characterized by using a polyphasic approach. The morphological and chemotaxonomic properties of the isolate were...
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| Veröffentlicht in: | Antonie van Leeuwenhoek 2015-02, Vol.107 (2), p.357-366 |
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| creator | Li, Shan-Hui Yu, Xiao-Yun Park, Dong-Jin Hozzein, Wael N Kim, Chang-Jin Shu, Wen-Sheng Wadaan, Mohammed A. M Ding, Lin-Xian Li, Wen-Jun |
| description | A Gram-positive, aerobic, non-motile, non-spore forming strain, designated DSD51Wᵀ, was isolated using a resuscitative technique from a soil sample collected from Kyoto park, Japan, and characterized by using a polyphasic approach. The morphological and chemotaxonomic properties of the isolate were typical of those of members of the genus Rhodococcus. Strain DSD51Wᵀwas found to form a coherent cluster with Rhodococcus hoagii ATCC 7005ᵀ, Rhodococcus equi NBRC 101255ᵀ, Rhodococcus defluvii Callᵀand Rhodococcus kunmingensis YIM 45607ᵀas its closest phylogenetic neighbours in 16S rRNA gene sequence analysis. However, the DNA–DNA hybridization values with the above strains were 58.2 ± 2.2, 58.4 ± 1.9, 45.1 ± 1.4 and 40.3 ± 4.7 %, respectively. In combination with differences in physiological and biochemical properties, strain DSD51Wᵀcan be concluded to represent a novel species of the genus Rhodococcus, for which the name Rhodococcus soli sp. nov. is proposed, with the type strain DSD51Wᵀ(=KCTC 29259ᵀ = JCM 19627ᵀ = DSM 46662ᵀ = KACC 17838ᵀ). |
| doi_str_mv | 10.1007/s10482-014-0334-x |
| format | Article |
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M ; Ding, Lin-Xian ; Li, Wen-Jun</creator><creatorcontrib>Li, Shan-Hui ; Yu, Xiao-Yun ; Park, Dong-Jin ; Hozzein, Wael N ; Kim, Chang-Jin ; Shu, Wen-Sheng ; Wadaan, Mohammed A. M ; Ding, Lin-Xian ; Li, Wen-Jun</creatorcontrib><description>A Gram-positive, aerobic, non-motile, non-spore forming strain, designated DSD51Wᵀ, was isolated using a resuscitative technique from a soil sample collected from Kyoto park, Japan, and characterized by using a polyphasic approach. The morphological and chemotaxonomic properties of the isolate were typical of those of members of the genus Rhodococcus. Strain DSD51Wᵀwas found to form a coherent cluster with Rhodococcus hoagii ATCC 7005ᵀ, Rhodococcus equi NBRC 101255ᵀ, Rhodococcus defluvii Callᵀand Rhodococcus kunmingensis YIM 45607ᵀas its closest phylogenetic neighbours in 16S rRNA gene sequence analysis. However, the DNA–DNA hybridization values with the above strains were 58.2 ± 2.2, 58.4 ± 1.9, 45.1 ± 1.4 and 40.3 ± 4.7 %, respectively. In combination with differences in physiological and biochemical properties, strain DSD51Wᵀcan be concluded to represent a novel species of the genus Rhodococcus, for which the name Rhodococcus soli sp. nov. is proposed, with the type strain DSD51Wᵀ(=KCTC 29259ᵀ = JCM 19627ᵀ = DSM 46662ᵀ = KACC 17838ᵀ).</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-014-0334-x</identifier><identifier>PMID: 25417053</identifier><language>eng</language><publisher>Cham: Springer-Verlag</publisher><subject>Aerobiosis ; Bacteria ; Bacterial Typing Techniques ; Biomedical and Life Sciences ; chemotaxonomy ; Cluster Analysis ; Deoxyribonucleic acid ; DNA ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Fatty Acids - analysis ; hybridization ; Japan ; Life Sciences ; Medical Microbiology ; Microbiology ; Molecular Sequence Data ; new species ; Nucleic Acid Hybridization ; nucleotide sequences ; Original Paper ; Phylogenetics ; Phylogeny ; Plant Sciences ; Rhodococcus - classification ; Rhodococcus - genetics ; Rhodococcus - isolation & purification ; Rhodococcus - physiology ; Rhodococcus equi ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; sequence analysis ; Sequence Analysis, DNA ; soil ; Soil Microbiology ; Soil microorganisms ; Soil Science & Conservation ; Taxonomy</subject><ispartof>Antonie van Leeuwenhoek, 2015-02, Vol.107 (2), p.357-366</ispartof><rights>Springer International Publishing Switzerland 2014</rights><rights>Springer International Publishing Switzerland 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c532t-881108eb44eb029317690b53796e5825dd4a4427d51444a04eafc3d7899671753</citedby><cites>FETCH-LOGICAL-c532t-881108eb44eb029317690b53796e5825dd4a4427d51444a04eafc3d7899671753</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-014-0334-x$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-014-0334-x$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25417053$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Shan-Hui</creatorcontrib><creatorcontrib>Yu, Xiao-Yun</creatorcontrib><creatorcontrib>Park, Dong-Jin</creatorcontrib><creatorcontrib>Hozzein, Wael N</creatorcontrib><creatorcontrib>Kim, Chang-Jin</creatorcontrib><creatorcontrib>Shu, Wen-Sheng</creatorcontrib><creatorcontrib>Wadaan, Mohammed A. M</creatorcontrib><creatorcontrib>Ding, Lin-Xian</creatorcontrib><creatorcontrib>Li, Wen-Jun</creatorcontrib><title>Rhodococcus soli sp. nov., an actinobacterium isolated from soil using a resuscitative technique</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>A Gram-positive, aerobic, non-motile, non-spore forming strain, designated DSD51Wᵀ, was isolated using a resuscitative technique from a soil sample collected from Kyoto park, Japan, and characterized by using a polyphasic approach. The morphological and chemotaxonomic properties of the isolate were typical of those of members of the genus Rhodococcus. Strain DSD51Wᵀwas found to form a coherent cluster with Rhodococcus hoagii ATCC 7005ᵀ, Rhodococcus equi NBRC 101255ᵀ, Rhodococcus defluvii Callᵀand Rhodococcus kunmingensis YIM 45607ᵀas its closest phylogenetic neighbours in 16S rRNA gene sequence analysis. However, the DNA–DNA hybridization values with the above strains were 58.2 ± 2.2, 58.4 ± 1.9, 45.1 ± 1.4 and 40.3 ± 4.7 %, respectively. In combination with differences in physiological and biochemical properties, strain DSD51Wᵀcan be concluded to represent a novel species of the genus Rhodococcus, for which the name Rhodococcus soli sp. nov. is proposed, with the type strain DSD51Wᵀ(=KCTC 29259ᵀ = JCM 19627ᵀ = DSM 46662ᵀ = KACC 17838ᵀ).</description><subject>Aerobiosis</subject><subject>Bacteria</subject><subject>Bacterial Typing Techniques</subject><subject>Biomedical and Life Sciences</subject><subject>chemotaxonomy</subject><subject>Cluster Analysis</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fatty Acids - analysis</subject><subject>hybridization</subject><subject>Japan</subject><subject>Life Sciences</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>new species</subject><subject>Nucleic Acid Hybridization</subject><subject>nucleotide sequences</subject><subject>Original Paper</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Sciences</subject><subject>Rhodococcus - classification</subject><subject>Rhodococcus - genetics</subject><subject>Rhodococcus - isolation & purification</subject><subject>Rhodococcus - physiology</subject><subject>Rhodococcus equi</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>sequence analysis</subject><subject>Sequence Analysis, DNA</subject><subject>soil</subject><subject>Soil Microbiology</subject><subject>Soil microorganisms</subject><subject>Soil Science & Conservation</subject><subject>Taxonomy</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkU1rFTEUhoMo9lr9AW404MZF53rynSyltFooCK1dx0wmc5syM7kmM6X--6ZMFXFRXB1Cnvc9HB6E3hLYEgD1qRDgmjZAeAOM8ebuGdoQoWhjpDHP0QYAWCNB0QP0qpSb-jRSq5fogApOFAi2QT8urlOXfPJ-KbikIeKy3-Ip3W6PsJuw83OcUltHyHEZcayIm0OH-5zGyscBLyVOO-xwDmUpPs5ujrcBz8FfT_HnEl6jF70bSnjzOA_R1enJ9-Ovzfm3L2fHn88bLxidG60JAR1azkML1DCipIFWMGVkEJqKruOOc6o6QTjnDnhwvWed0sZIRZRgh-jj2rvPqa4tsx1j8WEY3BTSUiyREpg2FOR_oIIyoziYin74B71JS57qIZXiArjUoCpFVsrnVEoOvd3nOLr8yxKwD6bsaspWU_bBlL2rmXePzUs7hu5P4reaCtAVKPVr2oX81-onWt-vod4l63Y5Fnt1SYGI6l5pwTi7B4wApcE</recordid><startdate>20150201</startdate><enddate>20150201</enddate><creator>Li, Shan-Hui</creator><creator>Yu, Xiao-Yun</creator><creator>Park, Dong-Jin</creator><creator>Hozzein, Wael N</creator><creator>Kim, Chang-Jin</creator><creator>Shu, Wen-Sheng</creator><creator>Wadaan, Mohammed A. M</creator><creator>Ding, Lin-Xian</creator><creator>Li, Wen-Jun</creator><general>Springer-Verlag</general><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope></search><sort><creationdate>20150201</creationdate><title>Rhodococcus soli sp. nov., an actinobacterium isolated from soil using a resuscitative technique</title><author>Li, Shan-Hui ; Yu, Xiao-Yun ; Park, Dong-Jin ; Hozzein, Wael N ; Kim, Chang-Jin ; Shu, Wen-Sheng ; Wadaan, Mohammed A. M ; Ding, Lin-Xian ; Li, Wen-Jun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c532t-881108eb44eb029317690b53796e5825dd4a4427d51444a04eafc3d7899671753</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Aerobiosis</topic><topic>Bacteria</topic><topic>Bacterial Typing Techniques</topic><topic>Biomedical and Life Sciences</topic><topic>chemotaxonomy</topic><topic>Cluster Analysis</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fatty Acids - analysis</topic><topic>hybridization</topic><topic>Japan</topic><topic>Life Sciences</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>new species</topic><topic>Nucleic Acid Hybridization</topic><topic>nucleotide sequences</topic><topic>Original Paper</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Sciences</topic><topic>Rhodococcus - classification</topic><topic>Rhodococcus - genetics</topic><topic>Rhodococcus - isolation & purification</topic><topic>Rhodococcus - physiology</topic><topic>Rhodococcus equi</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>sequence analysis</topic><topic>Sequence Analysis, DNA</topic><topic>soil</topic><topic>Soil Microbiology</topic><topic>Soil microorganisms</topic><topic>Soil Science & Conservation</topic><topic>Taxonomy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Shan-Hui</creatorcontrib><creatorcontrib>Yu, Xiao-Yun</creatorcontrib><creatorcontrib>Park, Dong-Jin</creatorcontrib><creatorcontrib>Hozzein, Wael N</creatorcontrib><creatorcontrib>Kim, Chang-Jin</creatorcontrib><creatorcontrib>Shu, Wen-Sheng</creatorcontrib><creatorcontrib>Wadaan, Mohammed A. M</creatorcontrib><creatorcontrib>Ding, Lin-Xian</creatorcontrib><creatorcontrib>Li, Wen-Jun</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><jtitle>Antonie van Leeuwenhoek</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Li, Shan-Hui</au><au>Yu, Xiao-Yun</au><au>Park, Dong-Jin</au><au>Hozzein, Wael N</au><au>Kim, Chang-Jin</au><au>Shu, Wen-Sheng</au><au>Wadaan, Mohammed A. M</au><au>Ding, Lin-Xian</au><au>Li, Wen-Jun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Rhodococcus soli sp. nov., an actinobacterium isolated from soil using a resuscitative technique</atitle><jtitle>Antonie van Leeuwenhoek</jtitle><stitle>Antonie van Leeuwenhoek</stitle><addtitle>Antonie Van Leeuwenhoek</addtitle><date>2015-02-01</date><risdate>2015</risdate><volume>107</volume><issue>2</issue><spage>357</spage><epage>366</epage><pages>357-366</pages><issn>0003-6072</issn><eissn>1572-9699</eissn><abstract>A Gram-positive, aerobic, non-motile, non-spore forming strain, designated DSD51Wᵀ, was isolated using a resuscitative technique from a soil sample collected from Kyoto park, Japan, and characterized by using a polyphasic approach. The morphological and chemotaxonomic properties of the isolate were typical of those of members of the genus Rhodococcus. Strain DSD51Wᵀwas found to form a coherent cluster with Rhodococcus hoagii ATCC 7005ᵀ, Rhodococcus equi NBRC 101255ᵀ, Rhodococcus defluvii Callᵀand Rhodococcus kunmingensis YIM 45607ᵀas its closest phylogenetic neighbours in 16S rRNA gene sequence analysis. However, the DNA–DNA hybridization values with the above strains were 58.2 ± 2.2, 58.4 ± 1.9, 45.1 ± 1.4 and 40.3 ± 4.7 %, respectively. In combination with differences in physiological and biochemical properties, strain DSD51Wᵀcan be concluded to represent a novel species of the genus Rhodococcus, for which the name Rhodococcus soli sp. nov. is proposed, with the type strain DSD51Wᵀ(=KCTC 29259ᵀ = JCM 19627ᵀ = DSM 46662ᵀ = KACC 17838ᵀ).</abstract><cop>Cham</cop><pub>Springer-Verlag</pub><pmid>25417053</pmid><doi>10.1007/s10482-014-0334-x</doi><tpages>10</tpages></addata></record> |
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| subjects | Aerobiosis Bacteria Bacterial Typing Techniques Biomedical and Life Sciences chemotaxonomy Cluster Analysis Deoxyribonucleic acid DNA DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Fatty Acids - analysis hybridization Japan Life Sciences Medical Microbiology Microbiology Molecular Sequence Data new species Nucleic Acid Hybridization nucleotide sequences Original Paper Phylogenetics Phylogeny Plant Sciences Rhodococcus - classification Rhodococcus - genetics Rhodococcus - isolation & purification Rhodococcus - physiology Rhodococcus equi ribosomal RNA RNA, Ribosomal, 16S - genetics sequence analysis Sequence Analysis, DNA soil Soil Microbiology Soil microorganisms Soil Science & Conservation Taxonomy |
| title | Rhodococcus soli sp. nov., an actinobacterium isolated from soil using a resuscitative technique |
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