Comprehensive identification of the binding sites of cisplatin in hen egg white lysozyme
Platinum drugs have become one of the most important kinds of chemotherapy agents, and the interactions of these drugs with proteins play very important roles in their side effects and drug resistance. However, it is still a challenge to determine the binding sites of platinum drugs in proteins with...
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description | Platinum drugs have become one of the most important kinds of chemotherapy agents, and the interactions of these drugs with proteins play very important roles in their side effects and drug resistance. However, it is still a challenge to determine the binding sites of platinum drugs in proteins with multiple disulfide bonds and stable three-dimensional structures using mass spectrometry. Here, the interaction between cisplatin and hen egg white lysozyme (HEWL), a multi-disulfide-bond-containing protein with a stable three-dimensional structure, was investigated using Fourier transform ion cyclotron resonance mass spectrometry. Typical disulfide bond reduction with dithiothreitol/tris(2-carboxyethyl)phosphine before trypsin digestion destroyed the binding of cisplatin to HEWL, and no platination sites were found. Efficient trypsin digestion methods for HEWL–cisplatin adducts were developed to avoid the loss of platinum binding to protein. At 55 °C, platinated HEWL was digested directly by trypsin in 6 h, and multiple platinated peptides were observed. In 60 % acetonitrile, the digestion time of platinated HEWL was shortened to 2 h, and most of the platinated peptides were observed. In addition, the reduction of the disulfide bonds of HEWL greatly accelerated the reaction between HEWL and cisplatin, and the potential binding sites of cisplatin in reduced HEWL could be easily recognized. On the basis of the above-mentioned methods, multiple binding sites of cisplatin in HEWL were first identified by mass spectrometry.
Figure
Digestion methods for HEWL-cisplatin adducts |
doi_str_mv | 10.1007/s00216-014-7775-y |
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Figure
Digestion methods for HEWL-cisplatin adducts</description><identifier>ISSN: 1618-2642</identifier><identifier>EISSN: 1618-2650</identifier><identifier>DOI: 10.1007/s00216-014-7775-y</identifier><identifier>PMID: 24748452</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Amino Acid Sequence ; Analytical Chemistry ; Animals ; Antineoplastic Agents - chemistry ; Binding Sites ; Binding sites (Biochemistry) ; Biochemistry ; Cancer ; Characterization and Evaluation of Materials ; Chemical bonds ; Chemistry ; Chemistry and Materials Science ; Chickens ; Chromatography ; Cisplatin ; Cisplatin - chemistry ; Digestion ; Disulfides ; Disulfides - chemistry ; Drag ; Drug resistance ; Egg (Biology) ; Enzymes ; Food Science ; Fourier Analysis ; Fourier transforms ; Ions ; Laboratory Medicine ; Lysozyme ; Mass spectrometry ; Molecular Sequence Data ; Monitoring/Environmental Analysis ; Muramidase - chemistry ; Paper in Forefront ; Peptides ; Peptides - chemistry ; Physiological aspects ; Platinum ; Protein research ; Proteins ; Scientific imaging ; Side effects ; Solvents - chemistry ; Spectrometry, Mass, Electrospray Ionization ; Spectroscopy, Fourier Transform Infrared ; Surfactants ; Temperature ; Toxicology ; Trypsin ; Trypsin - chemistry</subject><ispartof>Analytical and bioanalytical chemistry, 2014-06, Vol.406 (15), p.3537-3549</ispartof><rights>Springer-Verlag Berlin Heidelberg 2014</rights><rights>COPYRIGHT 2014 Springer</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c542t-df76dfca32a70a6a8f3fb21b59f00f313fcfae002a246a33b6d72d7acdc502bc3</citedby><cites>FETCH-LOGICAL-c542t-df76dfca32a70a6a8f3fb21b59f00f313fcfae002a246a33b6d72d7acdc502bc3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00216-014-7775-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00216-014-7775-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24748452$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Ningbo</creatorcontrib><creatorcontrib>Du, Yonggang</creatorcontrib><creatorcontrib>Cui, Meng</creatorcontrib><creatorcontrib>Liu, Zhiqiang</creatorcontrib><creatorcontrib>Liu, Shuying</creatorcontrib><title>Comprehensive identification of the binding sites of cisplatin in hen egg white lysozyme</title><title>Analytical and bioanalytical chemistry</title><addtitle>Anal Bioanal Chem</addtitle><addtitle>Anal Bioanal Chem</addtitle><description>Platinum drugs have become one of the most important kinds of chemotherapy agents, and the interactions of these drugs with proteins play very important roles in their side effects and drug resistance. However, it is still a challenge to determine the binding sites of platinum drugs in proteins with multiple disulfide bonds and stable three-dimensional structures using mass spectrometry. Here, the interaction between cisplatin and hen egg white lysozyme (HEWL), a multi-disulfide-bond-containing protein with a stable three-dimensional structure, was investigated using Fourier transform ion cyclotron resonance mass spectrometry. Typical disulfide bond reduction with dithiothreitol/tris(2-carboxyethyl)phosphine before trypsin digestion destroyed the binding of cisplatin to HEWL, and no platination sites were found. Efficient trypsin digestion methods for HEWL–cisplatin adducts were developed to avoid the loss of platinum binding to protein. At 55 °C, platinated HEWL was digested directly by trypsin in 6 h, and multiple platinated peptides were observed. In 60 % acetonitrile, the digestion time of platinated HEWL was shortened to 2 h, and most of the platinated peptides were observed. In addition, the reduction of the disulfide bonds of HEWL greatly accelerated the reaction between HEWL and cisplatin, and the potential binding sites of cisplatin in reduced HEWL could be easily recognized. On the basis of the above-mentioned methods, multiple binding sites of cisplatin in HEWL were first identified by mass spectrometry.
Figure
Digestion methods for HEWL-cisplatin adducts</description><subject>Amino Acid Sequence</subject><subject>Analytical Chemistry</subject><subject>Animals</subject><subject>Antineoplastic Agents - chemistry</subject><subject>Binding Sites</subject><subject>Binding sites (Biochemistry)</subject><subject>Biochemistry</subject><subject>Cancer</subject><subject>Characterization and Evaluation of Materials</subject><subject>Chemical bonds</subject><subject>Chemistry</subject><subject>Chemistry and Materials Science</subject><subject>Chickens</subject><subject>Chromatography</subject><subject>Cisplatin</subject><subject>Cisplatin - chemistry</subject><subject>Digestion</subject><subject>Disulfides</subject><subject>Disulfides - chemistry</subject><subject>Drag</subject><subject>Drug resistance</subject><subject>Egg (Biology)</subject><subject>Enzymes</subject><subject>Food Science</subject><subject>Fourier Analysis</subject><subject>Fourier transforms</subject><subject>Ions</subject><subject>Laboratory Medicine</subject><subject>Lysozyme</subject><subject>Mass spectrometry</subject><subject>Molecular Sequence Data</subject><subject>Monitoring/Environmental Analysis</subject><subject>Muramidase - chemistry</subject><subject>Paper in Forefront</subject><subject>Peptides</subject><subject>Peptides - chemistry</subject><subject>Physiological aspects</subject><subject>Platinum</subject><subject>Protein research</subject><subject>Proteins</subject><subject>Scientific imaging</subject><subject>Side effects</subject><subject>Solvents - chemistry</subject><subject>Spectrometry, Mass, Electrospray Ionization</subject><subject>Spectroscopy, Fourier Transform Infrared</subject><subject>Surfactants</subject><subject>Temperature</subject><subject>Toxicology</subject><subject>Trypsin</subject><subject>Trypsin - chemistry</subject><issn>1618-2642</issn><issn>1618-2650</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkk2LFDEQhoMo7rr6A7xIwIuXXivpfPQel8EvWPCi4C2k05WeLN3JmPS4tL_eDLOuHyhKAglVz1upCi8hTxmcMwD9sgBwphpgotFay2a9R06ZYl3DlYT7d3fBT8ijUq4BmOyYekhOuNCiE5Kfkk-bNO8ybjGW8AVpGDAuwQdnl5AiTZ4uW6R9iEOIIy1hwXIIulB2U0UirbtqKY4jvdnWNJ3Wkr6uMz4mD7ydCj65Pc_Ix9evPmzeNlfv37zbXF41Tgq-NIPXavDOttxqsMp2vvU9Z7288AC-Za133mKd03KhbNv2atB80NYNTgLvXXtGXhzr7nL6vMeymDkUh9NkI6Z9MUwpgLbTTPwblUqDYvUn_wPlSrdccFbR57-h12mfY525vq2hclJ1P6jRTmhC9GnJ1h2KmsvaXSfhQuhKnf-BqmvAObgU0Yca_0XAjgKXUykZvdnlMNu8Ggbm4BFz9IipHjEHj5i1ap7dNrzvZxzuFN9NUQF-BEpNxRHzTxP9teo3A2rFpA</recordid><startdate>20140601</startdate><enddate>20140601</enddate><creator>Zhang, Ningbo</creator><creator>Du, Yonggang</creator><creator>Cui, Meng</creator><creator>Liu, Zhiqiang</creator><creator>Liu, Shuying</creator><general>Springer Berlin Heidelberg</general><general>Springer</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7U5</scope><scope>7U7</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8BQ</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>F28</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H8D</scope><scope>H8G</scope><scope>HCIFZ</scope><scope>JG9</scope><scope>JQ2</scope><scope>K9.</scope><scope>KB.</scope><scope>KR7</scope><scope>L7M</scope><scope>LK8</scope><scope>L~C</scope><scope>L~D</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PDBOC</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>7QH</scope><scope>7UA</scope></search><sort><creationdate>20140601</creationdate><title>Comprehensive identification of the binding sites of cisplatin in hen egg white lysozyme</title><author>Zhang, Ningbo ; Du, Yonggang ; Cui, Meng ; Liu, Zhiqiang ; Liu, Shuying</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c542t-df76dfca32a70a6a8f3fb21b59f00f313fcfae002a246a33b6d72d7acdc502bc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Amino Acid Sequence</topic><topic>Analytical Chemistry</topic><topic>Animals</topic><topic>Antineoplastic Agents - chemistry</topic><topic>Binding Sites</topic><topic>Binding sites (Biochemistry)</topic><topic>Biochemistry</topic><topic>Cancer</topic><topic>Characterization and Evaluation of Materials</topic><topic>Chemical bonds</topic><topic>Chemistry</topic><topic>Chemistry and Materials Science</topic><topic>Chickens</topic><topic>Chromatography</topic><topic>Cisplatin</topic><topic>Cisplatin - chemistry</topic><topic>Digestion</topic><topic>Disulfides</topic><topic>Disulfides - chemistry</topic><topic>Drag</topic><topic>Drug resistance</topic><topic>Egg (Biology)</topic><topic>Enzymes</topic><topic>Food Science</topic><topic>Fourier Analysis</topic><topic>Fourier transforms</topic><topic>Ions</topic><topic>Laboratory Medicine</topic><topic>Lysozyme</topic><topic>Mass spectrometry</topic><topic>Molecular Sequence Data</topic><topic>Monitoring/Environmental Analysis</topic><topic>Muramidase - chemistry</topic><topic>Paper in Forefront</topic><topic>Peptides</topic><topic>Peptides - chemistry</topic><topic>Physiological aspects</topic><topic>Platinum</topic><topic>Protein research</topic><topic>Proteins</topic><topic>Scientific imaging</topic><topic>Side effects</topic><topic>Solvents - 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Academic</collection><collection>Aqualine</collection><collection>Water Resources Abstracts</collection><jtitle>Analytical and bioanalytical chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Ningbo</au><au>Du, Yonggang</au><au>Cui, Meng</au><au>Liu, Zhiqiang</au><au>Liu, Shuying</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comprehensive identification of the binding sites of cisplatin in hen egg white lysozyme</atitle><jtitle>Analytical and bioanalytical chemistry</jtitle><stitle>Anal Bioanal Chem</stitle><addtitle>Anal Bioanal Chem</addtitle><date>2014-06-01</date><risdate>2014</risdate><volume>406</volume><issue>15</issue><spage>3537</spage><epage>3549</epage><pages>3537-3549</pages><issn>1618-2642</issn><eissn>1618-2650</eissn><abstract>Platinum drugs have become one of the most important kinds of chemotherapy agents, and the interactions of these drugs with proteins play very important roles in their side effects and drug resistance. However, it is still a challenge to determine the binding sites of platinum drugs in proteins with multiple disulfide bonds and stable three-dimensional structures using mass spectrometry. Here, the interaction between cisplatin and hen egg white lysozyme (HEWL), a multi-disulfide-bond-containing protein with a stable three-dimensional structure, was investigated using Fourier transform ion cyclotron resonance mass spectrometry. Typical disulfide bond reduction with dithiothreitol/tris(2-carboxyethyl)phosphine before trypsin digestion destroyed the binding of cisplatin to HEWL, and no platination sites were found. Efficient trypsin digestion methods for HEWL–cisplatin adducts were developed to avoid the loss of platinum binding to protein. At 55 °C, platinated HEWL was digested directly by trypsin in 6 h, and multiple platinated peptides were observed. In 60 % acetonitrile, the digestion time of platinated HEWL was shortened to 2 h, and most of the platinated peptides were observed. In addition, the reduction of the disulfide bonds of HEWL greatly accelerated the reaction between HEWL and cisplatin, and the potential binding sites of cisplatin in reduced HEWL could be easily recognized. On the basis of the above-mentioned methods, multiple binding sites of cisplatin in HEWL were first identified by mass spectrometry.
Figure
Digestion methods for HEWL-cisplatin adducts</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>24748452</pmid><doi>10.1007/s00216-014-7775-y</doi><tpages>13</tpages></addata></record> |
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subjects | Amino Acid Sequence Analytical Chemistry Animals Antineoplastic Agents - chemistry Binding Sites Binding sites (Biochemistry) Biochemistry Cancer Characterization and Evaluation of Materials Chemical bonds Chemistry Chemistry and Materials Science Chickens Chromatography Cisplatin Cisplatin - chemistry Digestion Disulfides Disulfides - chemistry Drag Drug resistance Egg (Biology) Enzymes Food Science Fourier Analysis Fourier transforms Ions Laboratory Medicine Lysozyme Mass spectrometry Molecular Sequence Data Monitoring/Environmental Analysis Muramidase - chemistry Paper in Forefront Peptides Peptides - chemistry Physiological aspects Platinum Protein research Proteins Scientific imaging Side effects Solvents - chemistry Spectrometry, Mass, Electrospray Ionization Spectroscopy, Fourier Transform Infrared Surfactants Temperature Toxicology Trypsin Trypsin - chemistry |
title | Comprehensive identification of the binding sites of cisplatin in hen egg white lysozyme |
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