Reconstructing the colonization history of lost wolf lineages by the analysis of the mitochondrial genome
[Display omitted] •Phylogeny of extinct wolf lineages in Japan using complete mitochondrial genomes.•A unique phylogenetic status of Japanese wolves is revealed.•Colonization to Japan paralleled with the wolf dynamics in Europe and America.•A hybrid origin of an enigmatic dog clade is suggested. The...
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| Veröffentlicht in: | Molecular phylogenetics and evolution 2014-11, Vol.80, p.105-112 |
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| container_title | Molecular phylogenetics and evolution |
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| creator | Matsumura, Shuichi Inoshima, Yasuo Ishiguro, Naotaka |
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•Phylogeny of extinct wolf lineages in Japan using complete mitochondrial genomes.•A unique phylogenetic status of Japanese wolves is revealed.•Colonization to Japan paralleled with the wolf dynamics in Europe and America.•A hybrid origin of an enigmatic dog clade is suggested.
The grey wolves (Canis lupus) originally inhabited major parts of the Northern hemisphere, but many local populations became extinct. Two lineages of wolves in Japan, namely, Japanese or Honshu (C. l. hodophilax) and Ezo or Hokkaido (C. l. hattai) wolves, rapidly went extinct between 100 and 120years ago. Here we analyse the complete mitochondrial genome sequences from ancient specimens and reconstruct the colonization history of the two extinct subspecies. We show a unique status of Japanese wolves in wolf phylogeny, suggesting their long time separation from other grey wolf populations. Japanese wolves appeared to have colonized the Japanese archipelago in the Late Pleistocene (ca. 25,000–125,000years ago). By contrast, Ezo wolves, which are clearly separated from Japanese wolves in phylogeny, are likely to have arrived at Japan relatively recently ( |
| doi_str_mv | 10.1016/j.ympev.2014.08.004 |
| format | Article |
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•Phylogeny of extinct wolf lineages in Japan using complete mitochondrial genomes.•A unique phylogenetic status of Japanese wolves is revealed.•Colonization to Japan paralleled with the wolf dynamics in Europe and America.•A hybrid origin of an enigmatic dog clade is suggested.
The grey wolves (Canis lupus) originally inhabited major parts of the Northern hemisphere, but many local populations became extinct. Two lineages of wolves in Japan, namely, Japanese or Honshu (C. l. hodophilax) and Ezo or Hokkaido (C. l. hattai) wolves, rapidly went extinct between 100 and 120years ago. Here we analyse the complete mitochondrial genome sequences from ancient specimens and reconstruct the colonization history of the two extinct subspecies. We show a unique status of Japanese wolves in wolf phylogeny, suggesting their long time separation from other grey wolf populations. Japanese wolves appeared to have colonized the Japanese archipelago in the Late Pleistocene (ca. 25,000–125,000years ago). By contrast, Ezo wolves, which are clearly separated from Japanese wolves in phylogeny, are likely to have arrived at Japan relatively recently (<14,000years ago). Interestingly, their colonization history to Japan tallies well with the dynamics of wolf populations in Europe and America during the last several millennia. Our analyses suggest that at least several thousands of wolves once inhabited in the Japanese archipelago. Our analyses also show that an enigmatic clade of domestic dogs is likely to have originated from rare admixture events between male dogs and female Japanese wolves.</description><identifier>ISSN: 1055-7903</identifier><identifier>EISSN: 1095-9513</identifier><identifier>DOI: 10.1016/j.ympev.2014.08.004</identifier><identifier>PMID: 25132126</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Animals ; Base Sequence ; Biological Evolution ; Canis lupus ; Colonization ; DNA, Mitochondrial - genetics ; Dogs - classification ; Dogs - genetics ; Domestic dog ; Ezo wolf ; Genome, Mitochondrial ; Japan ; Japanese wolf ; Likelihood Functions ; Molecular phylogeny ; Phylogeny ; Sequence Analysis, DNA ; Wolves - classification ; Wolves - genetics</subject><ispartof>Molecular phylogenetics and evolution, 2014-11, Vol.80, p.105-112</ispartof><rights>2014 Elsevier Inc.</rights><rights>Copyright © 2014 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c458t-4e15a9a434a7002d910c8c21ed9dbe2c84e68b1ef99604ba60986200d17d12873</citedby><cites>FETCH-LOGICAL-c458t-4e15a9a434a7002d910c8c21ed9dbe2c84e68b1ef99604ba60986200d17d12873</cites><orcidid>0000-0002-0368-006X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ympev.2014.08.004$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>315,781,785,3551,27929,27930,46000</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25132126$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Matsumura, Shuichi</creatorcontrib><creatorcontrib>Inoshima, Yasuo</creatorcontrib><creatorcontrib>Ishiguro, Naotaka</creatorcontrib><title>Reconstructing the colonization history of lost wolf lineages by the analysis of the mitochondrial genome</title><title>Molecular phylogenetics and evolution</title><addtitle>Mol Phylogenet Evol</addtitle><description>[Display omitted]
•Phylogeny of extinct wolf lineages in Japan using complete mitochondrial genomes.•A unique phylogenetic status of Japanese wolves is revealed.•Colonization to Japan paralleled with the wolf dynamics in Europe and America.•A hybrid origin of an enigmatic dog clade is suggested.
The grey wolves (Canis lupus) originally inhabited major parts of the Northern hemisphere, but many local populations became extinct. Two lineages of wolves in Japan, namely, Japanese or Honshu (C. l. hodophilax) and Ezo or Hokkaido (C. l. hattai) wolves, rapidly went extinct between 100 and 120years ago. Here we analyse the complete mitochondrial genome sequences from ancient specimens and reconstruct the colonization history of the two extinct subspecies. We show a unique status of Japanese wolves in wolf phylogeny, suggesting their long time separation from other grey wolf populations. Japanese wolves appeared to have colonized the Japanese archipelago in the Late Pleistocene (ca. 25,000–125,000years ago). By contrast, Ezo wolves, which are clearly separated from Japanese wolves in phylogeny, are likely to have arrived at Japan relatively recently (<14,000years ago). Interestingly, their colonization history to Japan tallies well with the dynamics of wolf populations in Europe and America during the last several millennia. Our analyses suggest that at least several thousands of wolves once inhabited in the Japanese archipelago. Our analyses also show that an enigmatic clade of domestic dogs is likely to have originated from rare admixture events between male dogs and female Japanese wolves.</description><subject>Animals</subject><subject>Base Sequence</subject><subject>Biological Evolution</subject><subject>Canis lupus</subject><subject>Colonization</subject><subject>DNA, Mitochondrial - genetics</subject><subject>Dogs - classification</subject><subject>Dogs - genetics</subject><subject>Domestic dog</subject><subject>Ezo wolf</subject><subject>Genome, Mitochondrial</subject><subject>Japan</subject><subject>Japanese wolf</subject><subject>Likelihood Functions</subject><subject>Molecular phylogeny</subject><subject>Phylogeny</subject><subject>Sequence Analysis, DNA</subject><subject>Wolves - classification</subject><subject>Wolves - genetics</subject><issn>1055-7903</issn><issn>1095-9513</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkU1r3DAQhkVpaD7aX1AoPvZid0aWbOvQQwn9CAQCIT0LWZ7d1WJLW0mb4v762tm0x9LTzDDPOy_My9hbhAoBmw_7ap4O9FhxQFFBVwGIF-wCQclSSaxfrr2UZaugPmeXKe0BEKWSr9g5X_YceXPB3D3Z4FOOR5ud3xZ5R4UNY_Dul8ku-GLnUg5xLsKmGEPKxc8wLp3zZLaUin5-Uhhvxjm5tFLrPLkc7C74ITozFlvyYaLX7GxjxkRvnusV-_7l88P1t_L27uvN9afb0grZ5VIQSqOMqIVpAfigEGxnOdKghp647QQ1XY-0UaoB0ZsGVNdwgAHbAXnX1lfs_enuIYYfR0pZTy5ZGkfjKRyTxkaKppVS_Q-KnCtY-AWtT6iNIaVIG32IbjJx1gh6jUPv9VMceo1DQ6eXOBbVu2eDYz_R8Ffz5_8L8PEE0PKRR0dRJ-vIWxpcJJv1ENw_DX4Do6edmA</recordid><startdate>20141101</startdate><enddate>20141101</enddate><creator>Matsumura, Shuichi</creator><creator>Inoshima, Yasuo</creator><creator>Ishiguro, Naotaka</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><orcidid>https://orcid.org/0000-0002-0368-006X</orcidid></search><sort><creationdate>20141101</creationdate><title>Reconstructing the colonization history of lost wolf lineages by the analysis of the mitochondrial genome</title><author>Matsumura, Shuichi ; Inoshima, Yasuo ; Ishiguro, Naotaka</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c458t-4e15a9a434a7002d910c8c21ed9dbe2c84e68b1ef99604ba60986200d17d12873</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Animals</topic><topic>Base Sequence</topic><topic>Biological Evolution</topic><topic>Canis lupus</topic><topic>Colonization</topic><topic>DNA, Mitochondrial - genetics</topic><topic>Dogs - classification</topic><topic>Dogs - genetics</topic><topic>Domestic dog</topic><topic>Ezo wolf</topic><topic>Genome, Mitochondrial</topic><topic>Japan</topic><topic>Japanese wolf</topic><topic>Likelihood Functions</topic><topic>Molecular phylogeny</topic><topic>Phylogeny</topic><topic>Sequence Analysis, DNA</topic><topic>Wolves - classification</topic><topic>Wolves - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Matsumura, Shuichi</creatorcontrib><creatorcontrib>Inoshima, Yasuo</creatorcontrib><creatorcontrib>Ishiguro, Naotaka</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Molecular phylogenetics and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Matsumura, Shuichi</au><au>Inoshima, Yasuo</au><au>Ishiguro, Naotaka</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Reconstructing the colonization history of lost wolf lineages by the analysis of the mitochondrial genome</atitle><jtitle>Molecular phylogenetics and evolution</jtitle><addtitle>Mol Phylogenet Evol</addtitle><date>2014-11-01</date><risdate>2014</risdate><volume>80</volume><spage>105</spage><epage>112</epage><pages>105-112</pages><issn>1055-7903</issn><eissn>1095-9513</eissn><abstract>[Display omitted]
•Phylogeny of extinct wolf lineages in Japan using complete mitochondrial genomes.•A unique phylogenetic status of Japanese wolves is revealed.•Colonization to Japan paralleled with the wolf dynamics in Europe and America.•A hybrid origin of an enigmatic dog clade is suggested.
The grey wolves (Canis lupus) originally inhabited major parts of the Northern hemisphere, but many local populations became extinct. Two lineages of wolves in Japan, namely, Japanese or Honshu (C. l. hodophilax) and Ezo or Hokkaido (C. l. hattai) wolves, rapidly went extinct between 100 and 120years ago. Here we analyse the complete mitochondrial genome sequences from ancient specimens and reconstruct the colonization history of the two extinct subspecies. We show a unique status of Japanese wolves in wolf phylogeny, suggesting their long time separation from other grey wolf populations. Japanese wolves appeared to have colonized the Japanese archipelago in the Late Pleistocene (ca. 25,000–125,000years ago). By contrast, Ezo wolves, which are clearly separated from Japanese wolves in phylogeny, are likely to have arrived at Japan relatively recently (<14,000years ago). Interestingly, their colonization history to Japan tallies well with the dynamics of wolf populations in Europe and America during the last several millennia. Our analyses suggest that at least several thousands of wolves once inhabited in the Japanese archipelago. Our analyses also show that an enigmatic clade of domestic dogs is likely to have originated from rare admixture events between male dogs and female Japanese wolves.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>25132126</pmid><doi>10.1016/j.ympev.2014.08.004</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-0368-006X</orcidid></addata></record> |
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| subjects | Animals Base Sequence Biological Evolution Canis lupus Colonization DNA, Mitochondrial - genetics Dogs - classification Dogs - genetics Domestic dog Ezo wolf Genome, Mitochondrial Japan Japanese wolf Likelihood Functions Molecular phylogeny Phylogeny Sequence Analysis, DNA Wolves - classification Wolves - genetics |
| title | Reconstructing the colonization history of lost wolf lineages by the analysis of the mitochondrial genome |
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