Diversity and community structure of fungi through a permafrost core profile from the Qinghai-Tibet Plateau of China
While a vast number of studies have addressed the prokaryotic diversity in permafrost, characterized by subzero temperatures, low water activity, and extremely low rates of nutrient and metabolite transfer, fungal patterns have received surprisingly limited attention. Here, the fungal diversity and...
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Veröffentlicht in: | Journal of basic microbiology 2014-12, Vol.54 (12), p.1331-1341 |
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creator | Hu, Weigang Zhang, Qi Li, Dingyao Cheng, Gang Mu, Jing Wu, Qingbai Niu, Fujun An, Lizhe Feng, Huyuan |
description | While a vast number of studies have addressed the prokaryotic diversity in permafrost, characterized by subzero temperatures, low water activity, and extremely low rates of nutrient and metabolite transfer, fungal patterns have received surprisingly limited attention. Here, the fungal diversity and community structure were investigated by culture‐dependent technique combined with cloning‐restriction fragment length polymorphism (RFLP) analysis of sediments in a 10‐m‐long permafrost core from the Qinghai‐Tibet Plateau of China. A total of 62 fungal phylotypes related to 10 distinct classes representing three phyla were recovered from 5031 clones generated in 13 environmental gene libraries. A large proportion of the phylotypes (25/62) that were distantly related to described fungal species appeared to be novel diversity. Ascomycota was the predominant group of fungi, with respect to both clone and phylotype number. Our results suggested there was the existence of cosmopolitan psychrophilic or psychrotolerant fungi in permafrost sediments, the community composition of fungi varied with increasing depth, while these communities largely distributed according to core layers. |
doi_str_mv | 10.1002/jobm.201400232 |
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Our results suggested there was the existence of cosmopolitan psychrophilic or psychrotolerant fungi in permafrost sediments, the community composition of fungi varied with increasing depth, while these communities largely distributed according to core layers.</description><identifier>ISSN: 0233-111X</identifier><identifier>EISSN: 1521-4028</identifier><identifier>DOI: 10.1002/jobm.201400232</identifier><identifier>PMID: 24920339</identifier><language>eng</language><publisher>Germany: Blackwell Publishing Ltd</publisher><subject>Ascomycota ; Biodiversity ; Community structure ; Fungal diversity ; Fungi - classification ; Fungi - genetics ; Genes, rRNA ; Permafrost ; Permafrost - microbiology ; Phylogeny ; Polymorphism, Restriction Fragment Length ; Qinghai-Tibet Plateau ; Tibet</subject><ispartof>Journal of basic microbiology, 2014-12, Vol.54 (12), p.1331-1341</ispartof><rights>2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim</rights><rights>2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4472-b27d5d79347abd61271e68d117fb0b5e29e21a8b7e25943c3d0dc2bebdd61e1d3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fjobm.201400232$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fjobm.201400232$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24920339$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hu, Weigang</creatorcontrib><creatorcontrib>Zhang, Qi</creatorcontrib><creatorcontrib>Li, Dingyao</creatorcontrib><creatorcontrib>Cheng, Gang</creatorcontrib><creatorcontrib>Mu, Jing</creatorcontrib><creatorcontrib>Wu, Qingbai</creatorcontrib><creatorcontrib>Niu, Fujun</creatorcontrib><creatorcontrib>An, Lizhe</creatorcontrib><creatorcontrib>Feng, Huyuan</creatorcontrib><title>Diversity and community structure of fungi through a permafrost core profile from the Qinghai-Tibet Plateau of China</title><title>Journal of basic microbiology</title><addtitle>J. Basic Microbiol</addtitle><description>While a vast number of studies have addressed the prokaryotic diversity in permafrost, characterized by subzero temperatures, low water activity, and extremely low rates of nutrient and metabolite transfer, fungal patterns have received surprisingly limited attention. Here, the fungal diversity and community structure were investigated by culture‐dependent technique combined with cloning‐restriction fragment length polymorphism (RFLP) analysis of sediments in a 10‐m‐long permafrost core from the Qinghai‐Tibet Plateau of China. A total of 62 fungal phylotypes related to 10 distinct classes representing three phyla were recovered from 5031 clones generated in 13 environmental gene libraries. A large proportion of the phylotypes (25/62) that were distantly related to described fungal species appeared to be novel diversity. Ascomycota was the predominant group of fungi, with respect to both clone and phylotype number. Our results suggested there was the existence of cosmopolitan psychrophilic or psychrotolerant fungi in permafrost sediments, the community composition of fungi varied with increasing depth, while these communities largely distributed according to core layers.</description><subject>Ascomycota</subject><subject>Biodiversity</subject><subject>Community structure</subject><subject>Fungal diversity</subject><subject>Fungi - classification</subject><subject>Fungi - genetics</subject><subject>Genes, rRNA</subject><subject>Permafrost</subject><subject>Permafrost - microbiology</subject><subject>Phylogeny</subject><subject>Polymorphism, Restriction Fragment Length</subject><subject>Qinghai-Tibet Plateau</subject><subject>Tibet</subject><issn>0233-111X</issn><issn>1521-4028</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkctvEzEQxi1ERUPhyhH5yGWLX7uOj5BCoCoUpKBws-z1bOKyj-AHNP89jlJy7mn0zfy-0Wg-hF5RckkJYW_vJjtcMkJFEZw9QTNaM1oJwuZP0ay0eEUp_XmOnsd4RwhRiqln6JwJxQjnaobSlf8DIfq0x2Z0uJ2GIY8HFVPIbcoB8NThLo8bj9M2THmzxQbvIAymC1NMxVGQXZg63wMuraFggL_7cbM1vlp5Cwl_600Ckw-bFls_mhforDN9hJcP9QL9-PhhtfhU3dwuPy_e3VStEJJVlklXO6m4kMa6hjJJoZk7SmVnia2BKWDUzK0EVivBW-6Ia5kF6woM1PEL9Oa4t9z3O0NMevCxhb43I0w5atrUomlEw-ePQLms65qopqCvH9BsB3B6F_xgwl7_f2oB1BH4W36yP80p0YfI9CEyfYpMX9--_3JSxVsdvT4muD95TfilG1lO0OuvS82Xq3XN1lQ3_B839ppY</recordid><startdate>201412</startdate><enddate>201412</enddate><creator>Hu, Weigang</creator><creator>Zhang, Qi</creator><creator>Li, Dingyao</creator><creator>Cheng, Gang</creator><creator>Mu, Jing</creator><creator>Wu, Qingbai</creator><creator>Niu, Fujun</creator><creator>An, Lizhe</creator><creator>Feng, Huyuan</creator><general>Blackwell Publishing Ltd</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope><scope>M7N</scope></search><sort><creationdate>201412</creationdate><title>Diversity and community structure of fungi through a permafrost core profile from the Qinghai-Tibet Plateau of China</title><author>Hu, Weigang ; Zhang, Qi ; Li, Dingyao ; Cheng, Gang ; Mu, Jing ; Wu, Qingbai ; Niu, Fujun ; An, Lizhe ; Feng, Huyuan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4472-b27d5d79347abd61271e68d117fb0b5e29e21a8b7e25943c3d0dc2bebdd61e1d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Ascomycota</topic><topic>Biodiversity</topic><topic>Community structure</topic><topic>Fungal diversity</topic><topic>Fungi - classification</topic><topic>Fungi - genetics</topic><topic>Genes, rRNA</topic><topic>Permafrost</topic><topic>Permafrost - microbiology</topic><topic>Phylogeny</topic><topic>Polymorphism, Restriction Fragment Length</topic><topic>Qinghai-Tibet Plateau</topic><topic>Tibet</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Hu, Weigang</creatorcontrib><creatorcontrib>Zhang, Qi</creatorcontrib><creatorcontrib>Li, Dingyao</creatorcontrib><creatorcontrib>Cheng, Gang</creatorcontrib><creatorcontrib>Mu, Jing</creatorcontrib><creatorcontrib>Wu, Qingbai</creatorcontrib><creatorcontrib>Niu, Fujun</creatorcontrib><creatorcontrib>An, Lizhe</creatorcontrib><creatorcontrib>Feng, Huyuan</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><jtitle>Journal of basic microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Hu, Weigang</au><au>Zhang, Qi</au><au>Li, Dingyao</au><au>Cheng, Gang</au><au>Mu, Jing</au><au>Wu, Qingbai</au><au>Niu, Fujun</au><au>An, Lizhe</au><au>Feng, Huyuan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Diversity and community structure of fungi through a permafrost core profile from the Qinghai-Tibet Plateau of China</atitle><jtitle>Journal of basic microbiology</jtitle><addtitle>J. Basic Microbiol</addtitle><date>2014-12</date><risdate>2014</risdate><volume>54</volume><issue>12</issue><spage>1331</spage><epage>1341</epage><pages>1331-1341</pages><issn>0233-111X</issn><eissn>1521-4028</eissn><abstract>While a vast number of studies have addressed the prokaryotic diversity in permafrost, characterized by subzero temperatures, low water activity, and extremely low rates of nutrient and metabolite transfer, fungal patterns have received surprisingly limited attention. Here, the fungal diversity and community structure were investigated by culture‐dependent technique combined with cloning‐restriction fragment length polymorphism (RFLP) analysis of sediments in a 10‐m‐long permafrost core from the Qinghai‐Tibet Plateau of China. A total of 62 fungal phylotypes related to 10 distinct classes representing three phyla were recovered from 5031 clones generated in 13 environmental gene libraries. 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subjects | Ascomycota Biodiversity Community structure Fungal diversity Fungi - classification Fungi - genetics Genes, rRNA Permafrost Permafrost - microbiology Phylogeny Polymorphism, Restriction Fragment Length Qinghai-Tibet Plateau Tibet |
title | Diversity and community structure of fungi through a permafrost core profile from the Qinghai-Tibet Plateau of China |
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