MICROBIAL ECOLOGY AND BIOFILMS IN THE TAPHONOMY OF SOFT TISSUES
Authigenic mineralization of embryos (and potentially other soft-bodied organisms) requires first stabilization of cells against rapid self-autolytic destruction, and secondly a role for bacterial biofilms that preserve rather than destructively consume tissue. We predict that the ecology of the sec...
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Veröffentlicht in: | Palaios 2014-11, Vol.29 (11), p.560-569 |
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creator | RAFF, RUDOLF A ANDREWS, MARY E PEARSON, RONALD L TURNER, F. RUDOLF SAUR, SEBASTIAN T THOMAS, DANIEL C EAGAN, JUSTIN L RAFF, ELIZABETH C |
description | Authigenic mineralization of embryos (and potentially other soft-bodied organisms) requires first stabilization of cells against rapid self-autolytic destruction, and secondly a role for bacterial biofilms that preserve rather than destructively consume tissue. We predict that the ecology of the second stage in preservation will depend on environmental effects on the bacterial species present, coupled with mutual interactions between the bacteria themselves. We have created a simple experimental model made up of two antagonistic marine bacterial species, tested on a taphonomic target of autolysis-inhibited killed marine embryos. Pseudoalteromonas tunicata forms a three-dimensional preserving biofilm with killed embryos, whereas P. luteoviolacea destroys embryo tissue. Our model system allows controlled laboratory tests of microbial interactions under taphonomic conditions selected to test inferred paleoenvironments present in Lagerstätten. We varied environmental conditions one at a time, and observed the taphonomic outcome for killed embryos in the presence of each species alone, and with both species present in direct competition. Parameters tested include temperature, pH, oxygen level, salinity, and nutrient state. Pseudoalteromonas tunicata was robust in generating preserving biofilm pseudomorphs over a wide range of conditions. In competition, P. luteoviolacea destruction dominated in most conditions. However, we identified conditions of temperature, pH, and salinity where P. luteoviolacea grows poorly and preservation by P. tunicata dominates. Elevated external nutrients reduced the fidelity of P. tunicata pseudomorphs. In low oxygen, P. tunicata physiology was altered and it switched to become a destroyer, dramatically showing the extent to which environment can determine taphonomic outcomes. |
doi_str_mv | 10.2110/palo.2014.043 |
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RUDOLF ; SAUR, SEBASTIAN T ; THOMAS, DANIEL C ; EAGAN, JUSTIN L ; RAFF, ELIZABETH C</creator><creatorcontrib>RAFF, RUDOLF A ; ANDREWS, MARY E ; PEARSON, RONALD L ; TURNER, F. RUDOLF ; SAUR, SEBASTIAN T ; THOMAS, DANIEL C ; EAGAN, JUSTIN L ; RAFF, ELIZABETH C</creatorcontrib><description>Authigenic mineralization of embryos (and potentially other soft-bodied organisms) requires first stabilization of cells against rapid self-autolytic destruction, and secondly a role for bacterial biofilms that preserve rather than destructively consume tissue. We predict that the ecology of the second stage in preservation will depend on environmental effects on the bacterial species present, coupled with mutual interactions between the bacteria themselves. We have created a simple experimental model made up of two antagonistic marine bacterial species, tested on a taphonomic target of autolysis-inhibited killed marine embryos. Pseudoalteromonas tunicata forms a three-dimensional preserving biofilm with killed embryos, whereas P. luteoviolacea destroys embryo tissue. Our model system allows controlled laboratory tests of microbial interactions under taphonomic conditions selected to test inferred paleoenvironments present in Lagerstätten. We varied environmental conditions one at a time, and observed the taphonomic outcome for killed embryos in the presence of each species alone, and with both species present in direct competition. Parameters tested include temperature, pH, oxygen level, salinity, and nutrient state. Pseudoalteromonas tunicata was robust in generating preserving biofilm pseudomorphs over a wide range of conditions. In competition, P. luteoviolacea destruction dominated in most conditions. However, we identified conditions of temperature, pH, and salinity where P. luteoviolacea grows poorly and preservation by P. tunicata dominates. Elevated external nutrients reduced the fidelity of P. tunicata pseudomorphs. In low oxygen, P. tunicata physiology was altered and it switched to become a destroyer, dramatically showing the extent to which environment can determine taphonomic outcomes.</description><identifier>ISSN: 0883-1351</identifier><identifier>EISSN: 1938-5323</identifier><identifier>DOI: 10.2110/palo.2014.043</identifier><language>eng</language><publisher>SEPM Society for Sedimentary Geology, 4111 S Darlington, Suite 100, Tulsa, OK 74135-6373, U.S.A: SEPM Society for Sedimentary Geology</publisher><subject>Bacteria ; Biofilms ; Echinodermata ; Echinoidea ; Echinozoa ; ecology ; electron microscopy data ; Embryos ; experimental studies ; Fossils ; growth ; Heliocidaris erythrogramma ; Invertebrata ; invertebrate ; laboratory studies ; living taxa ; modern analogs ; Nutrients ; Oxygen ; Paleontology ; preservation ; Pseudoalteromonas ; Pseudoalteromonas tunicata ; Salinity ; Sea water ; SEM data ; Taphonomy ; temperature ; Tunicata</subject><ispartof>Palaios, 2014-11, Vol.29 (11), p.560-569</ispartof><rights>SEPM (Society for Sedimentary Geology)</rights><rights>GeoRef, Copyright 2020, American Geosciences Institute. 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RUDOLF</creatorcontrib><creatorcontrib>SAUR, SEBASTIAN T</creatorcontrib><creatorcontrib>THOMAS, DANIEL C</creatorcontrib><creatorcontrib>EAGAN, JUSTIN L</creatorcontrib><creatorcontrib>RAFF, ELIZABETH C</creatorcontrib><title>MICROBIAL ECOLOGY AND BIOFILMS IN THE TAPHONOMY OF SOFT TISSUES</title><title>Palaios</title><description>Authigenic mineralization of embryos (and potentially other soft-bodied organisms) requires first stabilization of cells against rapid self-autolytic destruction, and secondly a role for bacterial biofilms that preserve rather than destructively consume tissue. We predict that the ecology of the second stage in preservation will depend on environmental effects on the bacterial species present, coupled with mutual interactions between the bacteria themselves. We have created a simple experimental model made up of two antagonistic marine bacterial species, tested on a taphonomic target of autolysis-inhibited killed marine embryos. Pseudoalteromonas tunicata forms a three-dimensional preserving biofilm with killed embryos, whereas P. luteoviolacea destroys embryo tissue. Our model system allows controlled laboratory tests of microbial interactions under taphonomic conditions selected to test inferred paleoenvironments present in Lagerstätten. We varied environmental conditions one at a time, and observed the taphonomic outcome for killed embryos in the presence of each species alone, and with both species present in direct competition. Parameters tested include temperature, pH, oxygen level, salinity, and nutrient state. Pseudoalteromonas tunicata was robust in generating preserving biofilm pseudomorphs over a wide range of conditions. In competition, P. luteoviolacea destruction dominated in most conditions. However, we identified conditions of temperature, pH, and salinity where P. luteoviolacea grows poorly and preservation by P. tunicata dominates. Elevated external nutrients reduced the fidelity of P. tunicata pseudomorphs. In low oxygen, P. tunicata physiology was altered and it switched to become a destroyer, dramatically showing the extent to which environment can determine taphonomic outcomes.</description><subject>Bacteria</subject><subject>Biofilms</subject><subject>Echinodermata</subject><subject>Echinoidea</subject><subject>Echinozoa</subject><subject>ecology</subject><subject>electron microscopy data</subject><subject>Embryos</subject><subject>experimental studies</subject><subject>Fossils</subject><subject>growth</subject><subject>Heliocidaris erythrogramma</subject><subject>Invertebrata</subject><subject>invertebrate</subject><subject>laboratory studies</subject><subject>living taxa</subject><subject>modern analogs</subject><subject>Nutrients</subject><subject>Oxygen</subject><subject>Paleontology</subject><subject>preservation</subject><subject>Pseudoalteromonas</subject><subject>Pseudoalteromonas tunicata</subject><subject>Salinity</subject><subject>Sea water</subject><subject>SEM data</subject><subject>Taphonomy</subject><subject>temperature</subject><subject>Tunicata</subject><issn>0883-1351</issn><issn>1938-5323</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><recordid>eNqFkEFLwzAYhoMoOKdHj0KOgnQm-do0O0mtqyt0q9h62ClkbSIbXTObDfHf2zHRo6fv8D68L9-D0DUlI0Ypud-qxo4Yof6I-HCCBnQMwguAwSkaECHAoxDQc3Th3JoQGpCADdDDLI1f88c0yvAkzrP8eYGj-RN-TPMkzWYFTue4nE5wGb1M83k-W-A8wUWelLhMi-JtUlyiM6Map69-7hCVyaSMp15flcZR5ikQ4c5jHAyHsF4yUftMc-4TaoSpl2BCphTQMQGoBKekMqEBCqDrsakqGirFAwFDdHus3Xb2Y6_dTm5WrtJNo1pt905S7oeEcR6yHvWOaNVZ5zpt5LZbbVT3JSmRB0_y4EkePMneU8_fHPm129nuF_aBCxDA-_zumL9r66qVbiv9abumlmu779r-50NVIAkJOYM_ermyttX_bH8DGlF68g</recordid><startdate>20141101</startdate><enddate>20141101</enddate><creator>RAFF, RUDOLF A</creator><creator>ANDREWS, MARY E</creator><creator>PEARSON, RONALD L</creator><creator>TURNER, F. RUDOLF</creator><creator>SAUR, SEBASTIAN T</creator><creator>THOMAS, DANIEL C</creator><creator>EAGAN, JUSTIN L</creator><creator>RAFF, ELIZABETH C</creator><general>SEPM Society for Sedimentary Geology</general><general>Society for Sedimentary Geology</general><general>SEPM (Society for Sedimentary Geology)</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>P64</scope></search><sort><creationdate>20141101</creationdate><title>MICROBIAL ECOLOGY AND BIOFILMS IN THE TAPHONOMY OF SOFT TISSUES</title><author>RAFF, RUDOLF A ; ANDREWS, MARY E ; PEARSON, RONALD L ; TURNER, F. RUDOLF ; SAUR, SEBASTIAN T ; THOMAS, DANIEL C ; EAGAN, JUSTIN L ; RAFF, ELIZABETH C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a387t-263f637db28d42e66401f8fdb3f72aa319033c8610cf7f3133ed9fcc17aa6583</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Bacteria</topic><topic>Biofilms</topic><topic>Echinodermata</topic><topic>Echinoidea</topic><topic>Echinozoa</topic><topic>ecology</topic><topic>electron microscopy data</topic><topic>Embryos</topic><topic>experimental studies</topic><topic>Fossils</topic><topic>growth</topic><topic>Heliocidaris erythrogramma</topic><topic>Invertebrata</topic><topic>invertebrate</topic><topic>laboratory studies</topic><topic>living taxa</topic><topic>modern analogs</topic><topic>Nutrients</topic><topic>Oxygen</topic><topic>Paleontology</topic><topic>preservation</topic><topic>Pseudoalteromonas</topic><topic>Pseudoalteromonas tunicata</topic><topic>Salinity</topic><topic>Sea water</topic><topic>SEM data</topic><topic>Taphonomy</topic><topic>temperature</topic><topic>Tunicata</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>RAFF, RUDOLF A</creatorcontrib><creatorcontrib>ANDREWS, MARY E</creatorcontrib><creatorcontrib>PEARSON, RONALD L</creatorcontrib><creatorcontrib>TURNER, F. RUDOLF</creatorcontrib><creatorcontrib>SAUR, SEBASTIAN T</creatorcontrib><creatorcontrib>THOMAS, DANIEL C</creatorcontrib><creatorcontrib>EAGAN, JUSTIN L</creatorcontrib><creatorcontrib>RAFF, ELIZABETH C</creatorcontrib><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Palaios</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>RAFF, RUDOLF A</au><au>ANDREWS, MARY E</au><au>PEARSON, RONALD L</au><au>TURNER, F. RUDOLF</au><au>SAUR, SEBASTIAN T</au><au>THOMAS, DANIEL C</au><au>EAGAN, JUSTIN L</au><au>RAFF, ELIZABETH C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>MICROBIAL ECOLOGY AND BIOFILMS IN THE TAPHONOMY OF SOFT TISSUES</atitle><jtitle>Palaios</jtitle><date>2014-11-01</date><risdate>2014</risdate><volume>29</volume><issue>11</issue><spage>560</spage><epage>569</epage><pages>560-569</pages><issn>0883-1351</issn><eissn>1938-5323</eissn><abstract>Authigenic mineralization of embryos (and potentially other soft-bodied organisms) requires first stabilization of cells against rapid self-autolytic destruction, and secondly a role for bacterial biofilms that preserve rather than destructively consume tissue. We predict that the ecology of the second stage in preservation will depend on environmental effects on the bacterial species present, coupled with mutual interactions between the bacteria themselves. We have created a simple experimental model made up of two antagonistic marine bacterial species, tested on a taphonomic target of autolysis-inhibited killed marine embryos. Pseudoalteromonas tunicata forms a three-dimensional preserving biofilm with killed embryos, whereas P. luteoviolacea destroys embryo tissue. Our model system allows controlled laboratory tests of microbial interactions under taphonomic conditions selected to test inferred paleoenvironments present in Lagerstätten. We varied environmental conditions one at a time, and observed the taphonomic outcome for killed embryos in the presence of each species alone, and with both species present in direct competition. Parameters tested include temperature, pH, oxygen level, salinity, and nutrient state. Pseudoalteromonas tunicata was robust in generating preserving biofilm pseudomorphs over a wide range of conditions. In competition, P. luteoviolacea destruction dominated in most conditions. However, we identified conditions of temperature, pH, and salinity where P. luteoviolacea grows poorly and preservation by P. tunicata dominates. Elevated external nutrients reduced the fidelity of P. tunicata pseudomorphs. In low oxygen, P. tunicata physiology was altered and it switched to become a destroyer, dramatically showing the extent to which environment can determine taphonomic outcomes.</abstract><cop>SEPM Society for Sedimentary Geology, 4111 S Darlington, Suite 100, Tulsa, OK 74135-6373, U.S.A</cop><pub>SEPM Society for Sedimentary Geology</pub><doi>10.2110/palo.2014.043</doi><tpages>10</tpages></addata></record> |
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subjects | Bacteria Biofilms Echinodermata Echinoidea Echinozoa ecology electron microscopy data Embryos experimental studies Fossils growth Heliocidaris erythrogramma Invertebrata invertebrate laboratory studies living taxa modern analogs Nutrients Oxygen Paleontology preservation Pseudoalteromonas Pseudoalteromonas tunicata Salinity Sea water SEM data Taphonomy temperature Tunicata |
title | MICROBIAL ECOLOGY AND BIOFILMS IN THE TAPHONOMY OF SOFT TISSUES |
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