AFLP markers for the study of rice biodiversity
AFLP was used as a DNA fingerprinting technique in rice (Oryza sativa L.) germplasm analysis. The high efficiency and random coverage of AFLP markers were established. With only five combinations of primers and RFLP anchors, a framework linkage map was constructed. This map demonstrated that the AFL...
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| Veröffentlicht in: | Theoretical and applied genetics 1998-04, Vol.96 (5), p.602-611 |
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| container_title | Theoretical and applied genetics |
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| creator | Zhu, J Gale, M.D Quarrie, S Jackson, M.T Bryan, G.J |
| description | AFLP was used as a DNA fingerprinting technique in rice (Oryza sativa L.) germplasm analysis. The high efficiency and random coverage of AFLP markers were established. With only five combinations of primers and RFLP anchors, a framework linkage map was constructed. This map demonstrated that the AFLP markers from a limited number of primers were not confined to any particular regions or chromosomes in the rice genome. To analyse the biodiversity of 57 rice germplasm accessions, we examined 179 polymorphic AFLP markers generated from four primer combinations. Both principal component analysis and cluster analysis were used, and three groups were clearly identified which corresponded to genotypes of Isozyme Groups I, II and VI. The number of markers needed for robust classification of rice germplasm and the diversity between/within the groups was established. |
| doi_str_mv | 10.1007/s001220050778 |
| format | Article |
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The high efficiency and random coverage of AFLP markers were established. With only five combinations of primers and RFLP anchors, a framework linkage map was constructed. This map demonstrated that the AFLP markers from a limited number of primers were not confined to any particular regions or chromosomes in the rice genome. To analyse the biodiversity of 57 rice germplasm accessions, we examined 179 polymorphic AFLP markers generated from four primer combinations. Both principal component analysis and cluster analysis were used, and three groups were clearly identified which corresponded to genotypes of Isozyme Groups I, II and VI. The number of markers needed for robust classification of rice germplasm and the diversity between/within the groups was established.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s001220050778</identifier><identifier>CODEN: THAGA6</identifier><language>eng</language><publisher>Heidelberg: Springer</publisher><subject>amplified fragment length polymorphism ; Analysis ; Biodiversity ; Biological and medical sciences ; Biological diversity ; Chromosome mapping ; Classical genetics, quantitative genetics, hybrids ; cluster analysis ; DNA fingerprinting ; Fundamental and applied biological sciences. Psychology ; Genetic aspects ; Genetic markers ; genetic variation ; Genetics ; Genetics of eukaryotes. Biological and molecular evolution ; genome ; Genomics ; germplasm ; Identification and classification ; isozymes ; linkage (genetics) ; Oryza sativa ; principal component analysis ; Principal components analysis ; Pteridophyta, spermatophyta ; restriction fragment length polymorphism ; Rice ; Vegetals</subject><ispartof>Theoretical and applied genetics, 1998-04, Vol.96 (5), p.602-611</ispartof><rights>1998 INIST-CNRS</rights><rights>COPYRIGHT 1998 Springer</rights><rights>Springer-Verlag Berlin Heidelberg 1998</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c378t-e051a5ffe24dcc44cce6ee9c9a9751663091b0db8dcf385c9c1ab73b78920d133</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=2216954$$DView record in Pascal Francis$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhu, J</creatorcontrib><creatorcontrib>Gale, M.D</creatorcontrib><creatorcontrib>Quarrie, S</creatorcontrib><creatorcontrib>Jackson, M.T</creatorcontrib><creatorcontrib>Bryan, G.J</creatorcontrib><title>AFLP markers for the study of rice biodiversity</title><title>Theoretical and applied genetics</title><description>AFLP was used as a DNA fingerprinting technique in rice (Oryza sativa L.) germplasm analysis. The high efficiency and random coverage of AFLP markers were established. With only five combinations of primers and RFLP anchors, a framework linkage map was constructed. This map demonstrated that the AFLP markers from a limited number of primers were not confined to any particular regions or chromosomes in the rice genome. To analyse the biodiversity of 57 rice germplasm accessions, we examined 179 polymorphic AFLP markers generated from four primer combinations. Both principal component analysis and cluster analysis were used, and three groups were clearly identified which corresponded to genotypes of Isozyme Groups I, II and VI. The number of markers needed for robust classification of rice germplasm and the diversity between/within the groups was established.</description><subject>amplified fragment length polymorphism</subject><subject>Analysis</subject><subject>Biodiversity</subject><subject>Biological and medical sciences</subject><subject>Biological diversity</subject><subject>Chromosome mapping</subject><subject>Classical genetics, quantitative genetics, hybrids</subject><subject>cluster analysis</subject><subject>DNA fingerprinting</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetic aspects</subject><subject>Genetic markers</subject><subject>genetic variation</subject><subject>Genetics</subject><subject>Genetics of eukaryotes. Biological and molecular evolution</subject><subject>genome</subject><subject>Genomics</subject><subject>germplasm</subject><subject>Identification and classification</subject><subject>isozymes</subject><subject>linkage (genetics)</subject><subject>Oryza sativa</subject><subject>principal component analysis</subject><subject>Principal components analysis</subject><subject>Pteridophyta, spermatophyta</subject><subject>restriction fragment length polymorphism</subject><subject>Rice</subject><subject>Vegetals</subject><issn>0040-5752</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1998</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNpd0E1r3DAQBmBRGug26bHnmhIKOTg7ow9LOi4haRYWEvJxFrIsbZw4VirZofvvq7KhkJ7mMM8MLy8hXxFOEUAuMwBSCiBASvWBLJAzWlPK6UeyAOBQCynoJ_I550cAoALYgixXF5vr6tmmJ59yFWKqpgdf5WnudlUMVeqdr9o-dv1r2ffT7ogcBDtk_-VtHpL7i_O7s8t6c_Vzfbba1I5JNdUeBFoRgqe8c45z53zjvXbaaimwaRhobKFrVecCU8Jph7aVrJVKU-iQsUPyY__3JcVfs8-Tee6z88NgRx_nbLDhnKOiBX7_Dz7GOY0lm1FCIyJFLOhkj7Z28KYfXRwn_3va2jlns769MSsGKCUHpYut99almHPywbykvhS0Mwjmb8_mXc_FH78FsNnZISQ7uj7_O6IUGy14Yd_2LNho7DYVcn9LARlQpXSjgP0BCzqCjQ</recordid><startdate>19980401</startdate><enddate>19980401</enddate><creator>Zhu, J</creator><creator>Gale, M.D</creator><creator>Quarrie, S</creator><creator>Jackson, M.T</creator><creator>Bryan, G.J</creator><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope></search><sort><creationdate>19980401</creationdate><title>AFLP markers for the study of rice biodiversity</title><author>Zhu, J ; Gale, M.D ; Quarrie, S ; Jackson, M.T ; Bryan, G.J</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c378t-e051a5ffe24dcc44cce6ee9c9a9751663091b0db8dcf385c9c1ab73b78920d133</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1998</creationdate><topic>amplified fragment length polymorphism</topic><topic>Analysis</topic><topic>Biodiversity</topic><topic>Biological and medical sciences</topic><topic>Biological diversity</topic><topic>Chromosome mapping</topic><topic>Classical genetics, quantitative genetics, hybrids</topic><topic>cluster analysis</topic><topic>DNA fingerprinting</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genetic aspects</topic><topic>Genetic markers</topic><topic>genetic variation</topic><topic>Genetics</topic><topic>Genetics of eukaryotes. Biological and molecular evolution</topic><topic>genome</topic><topic>Genomics</topic><topic>germplasm</topic><topic>Identification and classification</topic><topic>isozymes</topic><topic>linkage (genetics)</topic><topic>Oryza sativa</topic><topic>principal component analysis</topic><topic>Principal components analysis</topic><topic>Pteridophyta, spermatophyta</topic><topic>restriction fragment length polymorphism</topic><topic>Rice</topic><topic>Vegetals</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhu, J</creatorcontrib><creatorcontrib>Gale, M.D</creatorcontrib><creatorcontrib>Quarrie, S</creatorcontrib><creatorcontrib>Jackson, M.T</creatorcontrib><creatorcontrib>Bryan, G.J</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><jtitle>Theoretical and applied genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhu, J</au><au>Gale, M.D</au><au>Quarrie, S</au><au>Jackson, M.T</au><au>Bryan, G.J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>AFLP markers for the study of rice biodiversity</atitle><jtitle>Theoretical and applied genetics</jtitle><date>1998-04-01</date><risdate>1998</risdate><volume>96</volume><issue>5</issue><spage>602</spage><epage>611</epage><pages>602-611</pages><issn>0040-5752</issn><eissn>1432-2242</eissn><coden>THAGA6</coden><abstract>AFLP was used as a DNA fingerprinting technique in rice (Oryza sativa L.) germplasm analysis. The high efficiency and random coverage of AFLP markers were established. With only five combinations of primers and RFLP anchors, a framework linkage map was constructed. This map demonstrated that the AFLP markers from a limited number of primers were not confined to any particular regions or chromosomes in the rice genome. To analyse the biodiversity of 57 rice germplasm accessions, we examined 179 polymorphic AFLP markers generated from four primer combinations. Both principal component analysis and cluster analysis were used, and three groups were clearly identified which corresponded to genotypes of Isozyme Groups I, II and VI. The number of markers needed for robust classification of rice germplasm and the diversity between/within the groups was established.</abstract><cop>Heidelberg</cop><cop>Berlin</cop><pub>Springer</pub><doi>10.1007/s001220050778</doi><tpages>10</tpages></addata></record> |
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| ispartof | Theoretical and applied genetics, 1998-04, Vol.96 (5), p.602-611 |
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| subjects | amplified fragment length polymorphism Analysis Biodiversity Biological and medical sciences Biological diversity Chromosome mapping Classical genetics, quantitative genetics, hybrids cluster analysis DNA fingerprinting Fundamental and applied biological sciences. Psychology Genetic aspects Genetic markers genetic variation Genetics Genetics of eukaryotes. Biological and molecular evolution genome Genomics germplasm Identification and classification isozymes linkage (genetics) Oryza sativa principal component analysis Principal components analysis Pteridophyta, spermatophyta restriction fragment length polymorphism Rice Vegetals |
| title | AFLP markers for the study of rice biodiversity |
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