Metagenomic analysis of sludge from full-scale anaerobic digesters operated in municipal wastewater treatment plants
This study applied Illumina high-throughput sequencing to explore the microbial communities and functions in anaerobic digestion sludge (ADS) from two wastewater treatment plants based on a metagenomic view. Taxonomic analysis using SILVA SSU database indicated that Proteobacteria (9.52–13.50 %), Ba...
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| Veröffentlicht in: | Applied microbiology and biotechnology 2014-06, Vol.98 (12), p.5709-5718 |
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| creator | Yang, Ying Yu, Ke Xia, Yu Lau, Frankie T. K. Tang, Daniel T. W. Fung, Wing Cheong Fang, Herbert H. P. Zhang, Tong |
| description | This study applied Illumina high-throughput sequencing to explore the microbial communities and functions in anaerobic digestion sludge (ADS) from two wastewater treatment plants based on a metagenomic view. Taxonomic analysis using SILVA SSU database indicated that
Proteobacteria
(9.52–13.50 %),
Bacteroidetes
(7.18 %–10.65 %) and
Firmicutes
(7.53 %–9.46 %) were the most abundant phyla in the ADS. Differences of microbial communities between the two types of ADS were identified. Genera of
Methanosaeta
and
Methanosarcina
were the major methanogens. Functional analysis by SEED subsystems showed that the basic metabolic functions of metagenomes in the four ADS samples had no significant difference among them, but they were different from other microbial communities from activated sludge, human faeces, ocean and soil. Abundances of genes in methanogenesis pathway were also quantified using a methanogenesis genes database extracted from KEGG. Results showed that acetotrophic was the major methanogenic pathway in the anaerobic sludge digestion. |
| doi_str_mv | 10.1007/s00253-014-5648-0 |
| format | Article |
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Proteobacteria
(9.52–13.50 %),
Bacteroidetes
(7.18 %–10.65 %) and
Firmicutes
(7.53 %–9.46 %) were the most abundant phyla in the ADS. Differences of microbial communities between the two types of ADS were identified. Genera of
Methanosaeta
and
Methanosarcina
were the major methanogens. Functional analysis by SEED subsystems showed that the basic metabolic functions of metagenomes in the four ADS samples had no significant difference among them, but they were different from other microbial communities from activated sludge, human faeces, ocean and soil. Abundances of genes in methanogenesis pathway were also quantified using a methanogenesis genes database extracted from KEGG. Results showed that acetotrophic was the major methanogenic pathway in the anaerobic sludge digestion.</description><identifier>ISSN: 0175-7598</identifier><identifier>EISSN: 1432-0614</identifier><identifier>DOI: 10.1007/s00253-014-5648-0</identifier><identifier>PMID: 24633414</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Activated sludge ; Anaerobic digestion ; Anaerobiosis ; Analysis ; Archaea - classification ; Archaea - genetics ; Bacteria - classification ; Bacteria - genetics ; Biomedical and Life Sciences ; Biota ; Biotechnology ; Cluster Analysis ; Communities ; Computational Biology ; DNA, Archaeal - chemistry ; DNA, Archaeal - genetics ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Environmental Biotechnology ; Firmicutes ; Genes ; Genetic testing ; Genomics ; Humans ; Laboratories ; Life Sciences ; Methanogenesis ; Methanosaeta ; Methanosarcina ; Microbial activity ; Microbial Genetics and Genomics ; Microbiology ; Microorganisms ; Municipal wastewater ; Pathways ; Phylogeny ; Plants (organisms) ; Proteobacteria ; Purification ; RNA, Ribosomal, 16S - genetics ; Sewage ; Sewage - microbiology ; Sludge ; Sludge digestion ; Studies ; Wastewater treatment ; Wastewater treatment plants ; Water Purification ; Water treatment ; Water treatment plants</subject><ispartof>Applied microbiology and biotechnology, 2014-06, Vol.98 (12), p.5709-5718</ispartof><rights>Springer-Verlag Berlin Heidelberg 2014</rights><rights>COPYRIGHT 2014 Springer</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c712t-c85cdd862339818929a8d681e36032d7bb3ce7d076d9b50745c5f1e36f5a35033</citedby><cites>FETCH-LOGICAL-c712t-c85cdd862339818929a8d681e36032d7bb3ce7d076d9b50745c5f1e36f5a35033</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00253-014-5648-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00253-014-5648-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24633414$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yang, Ying</creatorcontrib><creatorcontrib>Yu, Ke</creatorcontrib><creatorcontrib>Xia, Yu</creatorcontrib><creatorcontrib>Lau, Frankie T. K.</creatorcontrib><creatorcontrib>Tang, Daniel T. W.</creatorcontrib><creatorcontrib>Fung, Wing Cheong</creatorcontrib><creatorcontrib>Fang, Herbert H. P.</creatorcontrib><creatorcontrib>Zhang, Tong</creatorcontrib><title>Metagenomic analysis of sludge from full-scale anaerobic digesters operated in municipal wastewater treatment plants</title><title>Applied microbiology and biotechnology</title><addtitle>Appl Microbiol Biotechnol</addtitle><addtitle>Appl Microbiol Biotechnol</addtitle><description>This study applied Illumina high-throughput sequencing to explore the microbial communities and functions in anaerobic digestion sludge (ADS) from two wastewater treatment plants based on a metagenomic view. Taxonomic analysis using SILVA SSU database indicated that
Proteobacteria
(9.52–13.50 %),
Bacteroidetes
(7.18 %–10.65 %) and
Firmicutes
(7.53 %–9.46 %) were the most abundant phyla in the ADS. Differences of microbial communities between the two types of ADS were identified. Genera of
Methanosaeta
and
Methanosarcina
were the major methanogens. Functional analysis by SEED subsystems showed that the basic metabolic functions of metagenomes in the four ADS samples had no significant difference among them, but they were different from other microbial communities from activated sludge, human faeces, ocean and soil. Abundances of genes in methanogenesis pathway were also quantified using a methanogenesis genes database extracted from KEGG. Results showed that acetotrophic was the major methanogenic pathway in the anaerobic sludge digestion.</description><subject>Activated sludge</subject><subject>Anaerobic digestion</subject><subject>Anaerobiosis</subject><subject>Analysis</subject><subject>Archaea - classification</subject><subject>Archaea - genetics</subject><subject>Bacteria - classification</subject><subject>Bacteria - genetics</subject><subject>Biomedical and Life Sciences</subject><subject>Biota</subject><subject>Biotechnology</subject><subject>Cluster Analysis</subject><subject>Communities</subject><subject>Computational Biology</subject><subject>DNA, Archaeal - chemistry</subject><subject>DNA, Archaeal - genetics</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Environmental Biotechnology</subject><subject>Firmicutes</subject><subject>Genes</subject><subject>Genetic testing</subject><subject>Genomics</subject><subject>Humans</subject><subject>Laboratories</subject><subject>Life Sciences</subject><subject>Methanogenesis</subject><subject>Methanosaeta</subject><subject>Methanosarcina</subject><subject>Microbial activity</subject><subject>Microbial Genetics and Genomics</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Municipal wastewater</subject><subject>Pathways</subject><subject>Phylogeny</subject><subject>Plants (organisms)</subject><subject>Proteobacteria</subject><subject>Purification</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sewage</subject><subject>Sewage - microbiology</subject><subject>Sludge</subject><subject>Sludge digestion</subject><subject>Studies</subject><subject>Wastewater treatment</subject><subject>Wastewater treatment plants</subject><subject>Water Purification</subject><subject>Water treatment</subject><subject>Water treatment plants</subject><issn>0175-7598</issn><issn>1432-0614</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkstu1TAQhiMEoofCA7BBltjAIsV3J8uqoqVSERKXteXYk8hVEgfbUenb43BKxUEgkBeWPN-M_5n5q-o5wScEY_UmYUwFqzHhtZC8qfGDakc4ozWWhD-sdpgoUSvRNkfVk5SuMSa0kfJxdUS5ZIwTvqvye8hmgDlM3iIzm_E2-YRCj9K4ugFQH8OE-nUc62TNCBsCMXQFdn6AlCEWeoFoMjjkZzSts7d-MSO6MSV6U94jyhFMnmDOaBnNnNPT6lFvxgTP7u7j6sv5289n7-qrDxeXZ6dXtVWE5to2wjrXSMpY25Cmpa1pnGwIMIkZdarrmAXlsJKu7QRWXFjRb9FeGCYwY8fVq33dJYava1GrJ58sjEUEhDVpIjllRCop_40KjiltKW7_A2Uct7wspKAvf0OvwxrLlH9QtMWKFp331FAmrP3chxyN3YrqU6bKn2XXm8KTP1DlOCi7CzP0vrwfJLw-SChMhm95MGtK-vLTx0OW7FkbQ0oRer1EP5l4qwnWm9f03mu6eE1vXtOb7Bd3za3dBO4-46e5CkD3QCqheYD4S_d_rfodjtTbqg</recordid><startdate>20140601</startdate><enddate>20140601</enddate><creator>Yang, Ying</creator><creator>Yu, Ke</creator><creator>Xia, Yu</creator><creator>Lau, Frankie T. K.</creator><creator>Tang, Daniel T. W.</creator><creator>Fung, Wing Cheong</creator><creator>Fang, Herbert H. P.</creator><creator>Zhang, Tong</creator><general>Springer Berlin Heidelberg</general><general>Springer</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7WY</scope><scope>7WZ</scope><scope>7X7</scope><scope>7XB</scope><scope>87Z</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8FL</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BEZIV</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FRNLG</scope><scope>FYUFA</scope><scope>F~G</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K60</scope><scope>K6~</scope><scope>K9.</scope><scope>L.-</scope><scope>LK8</scope><scope>M0C</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQBIZ</scope><scope>PQBZA</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>7QH</scope><scope>7QO</scope><scope>7UA</scope><scope>F1W</scope><scope>H97</scope><scope>L.G</scope><scope>7U5</scope><scope>F28</scope><scope>KR7</scope><scope>L7M</scope></search><sort><creationdate>20140601</creationdate><title>Metagenomic analysis of sludge from full-scale anaerobic digesters operated in municipal wastewater treatment plants</title><author>Yang, Ying ; Yu, Ke ; Xia, Yu ; Lau, Frankie T. K. ; Tang, Daniel T. W. ; Fung, Wing Cheong ; Fang, Herbert H. P. ; Zhang, Tong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c712t-c85cdd862339818929a8d681e36032d7bb3ce7d076d9b50745c5f1e36f5a35033</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Activated sludge</topic><topic>Anaerobic digestion</topic><topic>Anaerobiosis</topic><topic>Analysis</topic><topic>Archaea - classification</topic><topic>Archaea - genetics</topic><topic>Bacteria - classification</topic><topic>Bacteria - genetics</topic><topic>Biomedical and Life Sciences</topic><topic>Biota</topic><topic>Biotechnology</topic><topic>Cluster Analysis</topic><topic>Communities</topic><topic>Computational Biology</topic><topic>DNA, Archaeal - chemistry</topic><topic>DNA, Archaeal - genetics</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Environmental Biotechnology</topic><topic>Firmicutes</topic><topic>Genes</topic><topic>Genetic testing</topic><topic>Genomics</topic><topic>Humans</topic><topic>Laboratories</topic><topic>Life Sciences</topic><topic>Methanogenesis</topic><topic>Methanosaeta</topic><topic>Methanosarcina</topic><topic>Microbial activity</topic><topic>Microbial Genetics and Genomics</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Municipal wastewater</topic><topic>Pathways</topic><topic>Phylogeny</topic><topic>Plants (organisms)</topic><topic>Proteobacteria</topic><topic>Purification</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sewage</topic><topic>Sewage - microbiology</topic><topic>Sludge</topic><topic>Sludge digestion</topic><topic>Studies</topic><topic>Wastewater treatment</topic><topic>Wastewater treatment plants</topic><topic>Water Purification</topic><topic>Water treatment</topic><topic>Water treatment plants</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yang, Ying</creatorcontrib><creatorcontrib>Yu, Ke</creatorcontrib><creatorcontrib>Xia, Yu</creatorcontrib><creatorcontrib>Lau, Frankie T. 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K.</au><au>Tang, Daniel T. W.</au><au>Fung, Wing Cheong</au><au>Fang, Herbert H. P.</au><au>Zhang, Tong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Metagenomic analysis of sludge from full-scale anaerobic digesters operated in municipal wastewater treatment plants</atitle><jtitle>Applied microbiology and biotechnology</jtitle><stitle>Appl Microbiol Biotechnol</stitle><addtitle>Appl Microbiol Biotechnol</addtitle><date>2014-06-01</date><risdate>2014</risdate><volume>98</volume><issue>12</issue><spage>5709</spage><epage>5718</epage><pages>5709-5718</pages><issn>0175-7598</issn><eissn>1432-0614</eissn><abstract>This study applied Illumina high-throughput sequencing to explore the microbial communities and functions in anaerobic digestion sludge (ADS) from two wastewater treatment plants based on a metagenomic view. Taxonomic analysis using SILVA SSU database indicated that
Proteobacteria
(9.52–13.50 %),
Bacteroidetes
(7.18 %–10.65 %) and
Firmicutes
(7.53 %–9.46 %) were the most abundant phyla in the ADS. Differences of microbial communities between the two types of ADS were identified. Genera of
Methanosaeta
and
Methanosarcina
were the major methanogens. Functional analysis by SEED subsystems showed that the basic metabolic functions of metagenomes in the four ADS samples had no significant difference among them, but they were different from other microbial communities from activated sludge, human faeces, ocean and soil. Abundances of genes in methanogenesis pathway were also quantified using a methanogenesis genes database extracted from KEGG. Results showed that acetotrophic was the major methanogenic pathway in the anaerobic sludge digestion.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>24633414</pmid><doi>10.1007/s00253-014-5648-0</doi><tpages>10</tpages></addata></record> |
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| ispartof | Applied microbiology and biotechnology, 2014-06, Vol.98 (12), p.5709-5718 |
| issn | 0175-7598 1432-0614 |
| language | eng |
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| source | MEDLINE; SpringerLink Journals |
| subjects | Activated sludge Anaerobic digestion Anaerobiosis Analysis Archaea - classification Archaea - genetics Bacteria - classification Bacteria - genetics Biomedical and Life Sciences Biota Biotechnology Cluster Analysis Communities Computational Biology DNA, Archaeal - chemistry DNA, Archaeal - genetics DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Environmental Biotechnology Firmicutes Genes Genetic testing Genomics Humans Laboratories Life Sciences Methanogenesis Methanosaeta Methanosarcina Microbial activity Microbial Genetics and Genomics Microbiology Microorganisms Municipal wastewater Pathways Phylogeny Plants (organisms) Proteobacteria Purification RNA, Ribosomal, 16S - genetics Sewage Sewage - microbiology Sludge Sludge digestion Studies Wastewater treatment Wastewater treatment plants Water Purification Water treatment Water treatment plants |
| title | Metagenomic analysis of sludge from full-scale anaerobic digesters operated in municipal wastewater treatment plants |
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