An investigation into the MMP1 gene promoter region polymorphism - 1607 2G with recessive dystrophic epidermolysis bullosa disease severity in northeastern Mexican patients
Background Recessive dystrophic epidermolysis bullosa (RDEB) is a severe genetic skin blistering disorder caused by mutations in the gene COL7A1 encoding type VII collagen. Most of the patients' clinical severity depends in part on the nature and location of the mutations, ranging from the mild...
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Veröffentlicht in: | International journal of dermatology 2014-08, Vol.53 (8), p.985-990 |
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creator | Garza-Gómez, Jorge Cerda-Flores, Ricardo M. Gómez-Flores, Minerva Salas-Alanís, Julio C. Ocampo-Candiani, Jorge Martínez-Garza, Laura E. South, Andrew P. Gallardo-Blanco, Hugo L. |
description | Background
Recessive dystrophic epidermolysis bullosa (RDEB) is a severe genetic skin blistering disorder caused by mutations in the gene COL7A1 encoding type VII collagen. Most of the patients' clinical severity depends in part on the nature and location of the mutations, ranging from the mild form described as RDEBother‐generalized (RDEB‐O) to the more aggressive phenotype described as RDEBsevere‐generalized (RDEB‐sev gen). However, interfamilial and interindividual differences in subjects with identical COL7A1 mutations suggest the presence of modifier elements, which may influence severity. There is a single nucleotide polymorphism (SNP) at the promoter of the MMP1 gene‐encoding matrix metalloproteinase type 1, which has been studied as a genetic disease modifier in different patient cohorts with different findings.
Methods
We tested the SNP in 30 patients with RDEB and 130 controls whose four grandparents were born in northeastern Mexico. Patients were clinically classified as RDEB‐sev gen and RDEB‐O by three dermatologists. The SNPStats, RXC, and SPSS software were used to perform statistical testing.
Results
The allele frequencies for 2G were 0.607, 0.562, and 0.642 for RDEB‐O, RDEB‐sev gen, and the control group, respectively. When the genotype frequencies were compared, there was no significant difference between RDEB‐sev gen (OR = 0.38, CI 95% 0.12–1.21), RDEB‐O (OR = 1.03, CI 95% 0.21–4.96), and the control group.
Conclusion
We found no significant association in relation to the severity of the study subjects and the SNP at the promoter of the MMP1 gene. |
doi_str_mv | 10.1111/ijd.12499 |
format | Article |
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Recessive dystrophic epidermolysis bullosa (RDEB) is a severe genetic skin blistering disorder caused by mutations in the gene COL7A1 encoding type VII collagen. Most of the patients' clinical severity depends in part on the nature and location of the mutations, ranging from the mild form described as RDEBother‐generalized (RDEB‐O) to the more aggressive phenotype described as RDEBsevere‐generalized (RDEB‐sev gen). However, interfamilial and interindividual differences in subjects with identical COL7A1 mutations suggest the presence of modifier elements, which may influence severity. There is a single nucleotide polymorphism (SNP) at the promoter of the MMP1 gene‐encoding matrix metalloproteinase type 1, which has been studied as a genetic disease modifier in different patient cohorts with different findings.
Methods
We tested the SNP in 30 patients with RDEB and 130 controls whose four grandparents were born in northeastern Mexico. Patients were clinically classified as RDEB‐sev gen and RDEB‐O by three dermatologists. The SNPStats, RXC, and SPSS software were used to perform statistical testing.
Results
The allele frequencies for 2G were 0.607, 0.562, and 0.642 for RDEB‐O, RDEB‐sev gen, and the control group, respectively. When the genotype frequencies were compared, there was no significant difference between RDEB‐sev gen (OR = 0.38, CI 95% 0.12–1.21), RDEB‐O (OR = 1.03, CI 95% 0.21–4.96), and the control group.
Conclusion
We found no significant association in relation to the severity of the study subjects and the SNP at the promoter of the MMP1 gene.</description><identifier>ISSN: 0011-9059</identifier><identifier>EISSN: 1365-4632</identifier><identifier>DOI: 10.1111/ijd.12499</identifier><identifier>PMID: 24899116</identifier><language>eng</language><publisher>England: Blackwell Publishing Ltd</publisher><subject>Adolescent ; Adult ; Case-Control Studies ; Child ; Child, Preschool ; Epidermolysis Bullosa Dystrophica - genetics ; Gene Frequency ; Genotype ; Humans ; Matrix Metalloproteinase 1 - genetics ; Mexico ; Middle Aged ; Polymorphism, Single Nucleotide ; Promoter Regions, Genetic ; Severity of Illness Index ; Young Adult</subject><ispartof>International journal of dermatology, 2014-08, Vol.53 (8), p.985-990</ispartof><rights>2014 The International Society of Dermatology</rights><rights>2014 The International Society of Dermatology.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fijd.12499$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fijd.12499$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24899116$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Garza-Gómez, Jorge</creatorcontrib><creatorcontrib>Cerda-Flores, Ricardo M.</creatorcontrib><creatorcontrib>Gómez-Flores, Minerva</creatorcontrib><creatorcontrib>Salas-Alanís, Julio C.</creatorcontrib><creatorcontrib>Ocampo-Candiani, Jorge</creatorcontrib><creatorcontrib>Martínez-Garza, Laura E.</creatorcontrib><creatorcontrib>South, Andrew P.</creatorcontrib><creatorcontrib>Gallardo-Blanco, Hugo L.</creatorcontrib><title>An investigation into the MMP1 gene promoter region polymorphism - 1607 2G with recessive dystrophic epidermolysis bullosa disease severity in northeastern Mexican patients</title><title>International journal of dermatology</title><addtitle>Int J Dermatol</addtitle><description>Background
Recessive dystrophic epidermolysis bullosa (RDEB) is a severe genetic skin blistering disorder caused by mutations in the gene COL7A1 encoding type VII collagen. Most of the patients' clinical severity depends in part on the nature and location of the mutations, ranging from the mild form described as RDEBother‐generalized (RDEB‐O) to the more aggressive phenotype described as RDEBsevere‐generalized (RDEB‐sev gen). However, interfamilial and interindividual differences in subjects with identical COL7A1 mutations suggest the presence of modifier elements, which may influence severity. There is a single nucleotide polymorphism (SNP) at the promoter of the MMP1 gene‐encoding matrix metalloproteinase type 1, which has been studied as a genetic disease modifier in different patient cohorts with different findings.
Methods
We tested the SNP in 30 patients with RDEB and 130 controls whose four grandparents were born in northeastern Mexico. Patients were clinically classified as RDEB‐sev gen and RDEB‐O by three dermatologists. The SNPStats, RXC, and SPSS software were used to perform statistical testing.
Results
The allele frequencies for 2G were 0.607, 0.562, and 0.642 for RDEB‐O, RDEB‐sev gen, and the control group, respectively. When the genotype frequencies were compared, there was no significant difference between RDEB‐sev gen (OR = 0.38, CI 95% 0.12–1.21), RDEB‐O (OR = 1.03, CI 95% 0.21–4.96), and the control group.
Conclusion
We found no significant association in relation to the severity of the study subjects and the SNP at the promoter of the MMP1 gene.</description><subject>Adolescent</subject><subject>Adult</subject><subject>Case-Control Studies</subject><subject>Child</subject><subject>Child, Preschool</subject><subject>Epidermolysis Bullosa Dystrophica - genetics</subject><subject>Gene Frequency</subject><subject>Genotype</subject><subject>Humans</subject><subject>Matrix Metalloproteinase 1 - genetics</subject><subject>Mexico</subject><subject>Middle Aged</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Promoter Regions, Genetic</subject><subject>Severity of Illness Index</subject><subject>Young Adult</subject><issn>0011-9059</issn><issn>1365-4632</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1y0zAUhTUMDA2FBS_AaMnGrX4sWVp2CoQyCbAow1IjxzeJim0ZyUnrd-pD9qYp3aKNdEffuUe6h5D3nJ1xXOfhpjnjorT2BZlxqVVRailekhljnBeWKXtC3uR8g6UUvHxNTkRprOVcz8j9RU9Dv4c8ho0fQzxUY6TjFuhy-ZPTDfRAhxS7OEKiCTYHZIjt1MU0bEPuaEG5ZhUVc3obxi0iK8g57IE2Ux5TRGhFYQgNpA5lOWRa79o2Zk-bkMFnoBn2kMI4oTXtY0Jvn9Gtp0u4CyuPfvgy6Mf8lrxa-zbDu6f9lPz68vn68mux-DG_urxYFEEqZQuhRWWkqddKNTiWUijFmeWVMLJaC11po5hhq3JtwGvQwOpaKlBCaFWzhnN5Sj4e--LH_-5wNq4LeQVt63uIu-y4ltYaY0rxf1SVlZIC_RD98ITu6g4aN6TQ-TS5f2EgcH4EbkML0_M9Z-6QssOU3WPK7urbp8cDKoqjIuDA7p4VPv1xupKVcr-_z921sIIvqrlbyAcPD6mV</recordid><startdate>201408</startdate><enddate>201408</enddate><creator>Garza-Gómez, Jorge</creator><creator>Cerda-Flores, Ricardo M.</creator><creator>Gómez-Flores, Minerva</creator><creator>Salas-Alanís, Julio C.</creator><creator>Ocampo-Candiani, Jorge</creator><creator>Martínez-Garza, Laura E.</creator><creator>South, Andrew P.</creator><creator>Gallardo-Blanco, Hugo L.</creator><general>Blackwell Publishing Ltd</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>201408</creationdate><title>An investigation into the MMP1 gene promoter region polymorphism - 1607 2G with recessive dystrophic epidermolysis bullosa disease severity in northeastern Mexican patients</title><author>Garza-Gómez, Jorge ; Cerda-Flores, Ricardo M. ; Gómez-Flores, Minerva ; Salas-Alanís, Julio C. ; Ocampo-Candiani, Jorge ; Martínez-Garza, Laura E. ; South, Andrew P. ; Gallardo-Blanco, Hugo L.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-i3559-2627838bf55d1244255109172837f267685080c4f8ea6e6e0bb35e52265b0d113</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Adolescent</topic><topic>Adult</topic><topic>Case-Control Studies</topic><topic>Child</topic><topic>Child, Preschool</topic><topic>Epidermolysis Bullosa Dystrophica - genetics</topic><topic>Gene Frequency</topic><topic>Genotype</topic><topic>Humans</topic><topic>Matrix Metalloproteinase 1 - genetics</topic><topic>Mexico</topic><topic>Middle Aged</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Promoter Regions, Genetic</topic><topic>Severity of Illness Index</topic><topic>Young Adult</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Garza-Gómez, Jorge</creatorcontrib><creatorcontrib>Cerda-Flores, Ricardo M.</creatorcontrib><creatorcontrib>Gómez-Flores, Minerva</creatorcontrib><creatorcontrib>Salas-Alanís, Julio C.</creatorcontrib><creatorcontrib>Ocampo-Candiani, Jorge</creatorcontrib><creatorcontrib>Martínez-Garza, Laura E.</creatorcontrib><creatorcontrib>South, Andrew P.</creatorcontrib><creatorcontrib>Gallardo-Blanco, Hugo L.</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>International journal of dermatology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Garza-Gómez, Jorge</au><au>Cerda-Flores, Ricardo M.</au><au>Gómez-Flores, Minerva</au><au>Salas-Alanís, Julio C.</au><au>Ocampo-Candiani, Jorge</au><au>Martínez-Garza, Laura E.</au><au>South, Andrew P.</au><au>Gallardo-Blanco, Hugo L.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>An investigation into the MMP1 gene promoter region polymorphism - 1607 2G with recessive dystrophic epidermolysis bullosa disease severity in northeastern Mexican patients</atitle><jtitle>International journal of dermatology</jtitle><addtitle>Int J Dermatol</addtitle><date>2014-08</date><risdate>2014</risdate><volume>53</volume><issue>8</issue><spage>985</spage><epage>990</epage><pages>985-990</pages><issn>0011-9059</issn><eissn>1365-4632</eissn><abstract>Background
Recessive dystrophic epidermolysis bullosa (RDEB) is a severe genetic skin blistering disorder caused by mutations in the gene COL7A1 encoding type VII collagen. Most of the patients' clinical severity depends in part on the nature and location of the mutations, ranging from the mild form described as RDEBother‐generalized (RDEB‐O) to the more aggressive phenotype described as RDEBsevere‐generalized (RDEB‐sev gen). However, interfamilial and interindividual differences in subjects with identical COL7A1 mutations suggest the presence of modifier elements, which may influence severity. There is a single nucleotide polymorphism (SNP) at the promoter of the MMP1 gene‐encoding matrix metalloproteinase type 1, which has been studied as a genetic disease modifier in different patient cohorts with different findings.
Methods
We tested the SNP in 30 patients with RDEB and 130 controls whose four grandparents were born in northeastern Mexico. Patients were clinically classified as RDEB‐sev gen and RDEB‐O by three dermatologists. The SNPStats, RXC, and SPSS software were used to perform statistical testing.
Results
The allele frequencies for 2G were 0.607, 0.562, and 0.642 for RDEB‐O, RDEB‐sev gen, and the control group, respectively. When the genotype frequencies were compared, there was no significant difference between RDEB‐sev gen (OR = 0.38, CI 95% 0.12–1.21), RDEB‐O (OR = 1.03, CI 95% 0.21–4.96), and the control group.
Conclusion
We found no significant association in relation to the severity of the study subjects and the SNP at the promoter of the MMP1 gene.</abstract><cop>England</cop><pub>Blackwell Publishing Ltd</pub><pmid>24899116</pmid><doi>10.1111/ijd.12499</doi><tpages>6</tpages></addata></record> |
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source | MEDLINE; Wiley Online Library Journals Frontfile Complete |
subjects | Adolescent Adult Case-Control Studies Child Child, Preschool Epidermolysis Bullosa Dystrophica - genetics Gene Frequency Genotype Humans Matrix Metalloproteinase 1 - genetics Mexico Middle Aged Polymorphism, Single Nucleotide Promoter Regions, Genetic Severity of Illness Index Young Adult |
title | An investigation into the MMP1 gene promoter region polymorphism - 1607 2G with recessive dystrophic epidermolysis bullosa disease severity in northeastern Mexican patients |
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