Quantitative modeling of inducer transport in fed-batch cultures of Escherichia coli
•Modeling IPTG uptake in E. coli fed-batch protein production.•A non-structured non-segregated model has been proposed, calibrated and validated.•Lactose permeases contribution to IPTG transport has been quantified.•Two induction zones modeled with the same equation, but different parameters.•The mo...
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Veröffentlicht in: | Biochemical engineering journal 2014-10, Vol.91, p.210-219 |
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creator | Calleja, Daniel Fernández-Castañé, Alfred Pasini, Martina de Mas, Carles López-Santín, Josep |
description | •Modeling IPTG uptake in E. coli fed-batch protein production.•A non-structured non-segregated model has been proposed, calibrated and validated.•Lactose permeases contribution to IPTG transport has been quantified.•Two induction zones modeled with the same equation, but different parameters.•The model can be extended to other strains, producing other proteins.
An unsteady, unstructured, unsegregated and based on first principles mathematical model has been proposed to describe IPTG (isopropyl-β-d-tiogalactopiranoside) transport in induced fed-batch cultures of E. coli M15 ΔglyA [pQEαβrham] [pREP4] producing rhamnulose 1-phosphate aldolase (RhuA). The model predicts extracellular and intracellular IPTG concentration. Experimental extracellular IPTG concentrations under different operational conditions were obtained by HPLC–MS analysis. These experimental data were used to fit the parameters of the model. The model was also able to predict the experimental behavior of two different E. coli strains producing fuculose 1-phosphate aldolase (FucA). IPTG transport to cells was the contribution of three processes: a diffusion process, and two active processes (one non-specific and another specific). |
doi_str_mv | 10.1016/j.bej.2014.08.017 |
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An unsteady, unstructured, unsegregated and based on first principles mathematical model has been proposed to describe IPTG (isopropyl-β-d-tiogalactopiranoside) transport in induced fed-batch cultures of E. coli M15 ΔglyA [pQEαβrham] [pREP4] producing rhamnulose 1-phosphate aldolase (RhuA). The model predicts extracellular and intracellular IPTG concentration. Experimental extracellular IPTG concentrations under different operational conditions were obtained by HPLC–MS analysis. These experimental data were used to fit the parameters of the model. The model was also able to predict the experimental behavior of two different E. coli strains producing fuculose 1-phosphate aldolase (FucA). IPTG transport to cells was the contribution of three processes: a diffusion process, and two active processes (one non-specific and another specific).</description><identifier>ISSN: 1369-703X</identifier><identifier>EISSN: 1873-295X</identifier><identifier>DOI: 10.1016/j.bej.2014.08.017</identifier><language>eng</language><publisher>Amsterdam: Elsevier B.V</publisher><subject>Biological and medical sciences ; Biotechnology ; E. coli ; Escherichia coli ; Fundamental and applied biological sciences. Psychology ; Inducer transport ; IPTG ; Lac permeases ; Mathematical model</subject><ispartof>Biochemical engineering journal, 2014-10, Vol.91, p.210-219</ispartof><rights>2014 Elsevier B.V.</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c360t-38135f87e56c824206f4b8c8f02a5d5a2718f080bd21fa30a0c730e6e9fce0523</citedby><cites>FETCH-LOGICAL-c360t-38135f87e56c824206f4b8c8f02a5d5a2718f080bd21fa30a0c730e6e9fce0523</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.bej.2014.08.017$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=28848515$$DView record in Pascal Francis$$Hfree_for_read</backlink></links><search><creatorcontrib>Calleja, Daniel</creatorcontrib><creatorcontrib>Fernández-Castañé, Alfred</creatorcontrib><creatorcontrib>Pasini, Martina</creatorcontrib><creatorcontrib>de Mas, Carles</creatorcontrib><creatorcontrib>López-Santín, Josep</creatorcontrib><title>Quantitative modeling of inducer transport in fed-batch cultures of Escherichia coli</title><title>Biochemical engineering journal</title><description>•Modeling IPTG uptake in E. coli fed-batch protein production.•A non-structured non-segregated model has been proposed, calibrated and validated.•Lactose permeases contribution to IPTG transport has been quantified.•Two induction zones modeled with the same equation, but different parameters.•The model can be extended to other strains, producing other proteins.
An unsteady, unstructured, unsegregated and based on first principles mathematical model has been proposed to describe IPTG (isopropyl-β-d-tiogalactopiranoside) transport in induced fed-batch cultures of E. coli M15 ΔglyA [pQEαβrham] [pREP4] producing rhamnulose 1-phosphate aldolase (RhuA). The model predicts extracellular and intracellular IPTG concentration. Experimental extracellular IPTG concentrations under different operational conditions were obtained by HPLC–MS analysis. These experimental data were used to fit the parameters of the model. The model was also able to predict the experimental behavior of two different E. coli strains producing fuculose 1-phosphate aldolase (FucA). IPTG transport to cells was the contribution of three processes: a diffusion process, and two active processes (one non-specific and another specific).</description><subject>Biological and medical sciences</subject><subject>Biotechnology</subject><subject>E. coli</subject><subject>Escherichia coli</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Inducer transport</subject><subject>IPTG</subject><subject>Lac permeases</subject><subject>Mathematical model</subject><issn>1369-703X</issn><issn>1873-295X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><recordid>eNp9kE9LAzEQxYMoWKsfwNteBC-7TpJmN8WTiP9AEEGht5DOTmzKdrcmWcFvb0rFo6d5DO_N8H6MnXOoOPD6al0taV0J4LMKdAW8OWATrhtZirlaHGYt63nZgFwcs5MY1wBQy6aZsLfX0fbJJ5v8FxWboaXO9x_F4ArftyNSKFKwfdwOIeVN4agtlzbhqsCxS2OguLPeRVxR8LjytsCh86fsyNku0tnvnLL3-7u328fy-eXh6fbmuURZQyql5lI53ZCqUYuZgNrNlhq1A2FVq6xoeNYalq3gzkqwgI0EqmnukEAJOWWX-7vbMHyOFJPZ-IjUdbanYYyG11JlODJ3nTK-t2IYYgzkzDb4jQ3fhoPZETRrkwmaHUED2mSCOXPxe95GtJ3LINDHv6DQeqYVV9l3vfdR7vrlKZiInnqk1gfCZNrB__PlB0ZkhiI</recordid><startdate>20141015</startdate><enddate>20141015</enddate><creator>Calleja, Daniel</creator><creator>Fernández-Castañé, Alfred</creator><creator>Pasini, Martina</creator><creator>de Mas, Carles</creator><creator>López-Santín, Josep</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope></search><sort><creationdate>20141015</creationdate><title>Quantitative modeling of inducer transport in fed-batch cultures of Escherichia coli</title><author>Calleja, Daniel ; Fernández-Castañé, Alfred ; Pasini, Martina ; de Mas, Carles ; López-Santín, Josep</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c360t-38135f87e56c824206f4b8c8f02a5d5a2718f080bd21fa30a0c730e6e9fce0523</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Biological and medical sciences</topic><topic>Biotechnology</topic><topic>E. coli</topic><topic>Escherichia coli</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Inducer transport</topic><topic>IPTG</topic><topic>Lac permeases</topic><topic>Mathematical model</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Calleja, Daniel</creatorcontrib><creatorcontrib>Fernández-Castañé, Alfred</creatorcontrib><creatorcontrib>Pasini, Martina</creatorcontrib><creatorcontrib>de Mas, Carles</creatorcontrib><creatorcontrib>López-Santín, Josep</creatorcontrib><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Biochemical engineering journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Calleja, Daniel</au><au>Fernández-Castañé, Alfred</au><au>Pasini, Martina</au><au>de Mas, Carles</au><au>López-Santín, Josep</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Quantitative modeling of inducer transport in fed-batch cultures of Escherichia coli</atitle><jtitle>Biochemical engineering journal</jtitle><date>2014-10-15</date><risdate>2014</risdate><volume>91</volume><spage>210</spage><epage>219</epage><pages>210-219</pages><issn>1369-703X</issn><eissn>1873-295X</eissn><abstract>•Modeling IPTG uptake in E. coli fed-batch protein production.•A non-structured non-segregated model has been proposed, calibrated and validated.•Lactose permeases contribution to IPTG transport has been quantified.•Two induction zones modeled with the same equation, but different parameters.•The model can be extended to other strains, producing other proteins.
An unsteady, unstructured, unsegregated and based on first principles mathematical model has been proposed to describe IPTG (isopropyl-β-d-tiogalactopiranoside) transport in induced fed-batch cultures of E. coli M15 ΔglyA [pQEαβrham] [pREP4] producing rhamnulose 1-phosphate aldolase (RhuA). The model predicts extracellular and intracellular IPTG concentration. Experimental extracellular IPTG concentrations under different operational conditions were obtained by HPLC–MS analysis. These experimental data were used to fit the parameters of the model. The model was also able to predict the experimental behavior of two different E. coli strains producing fuculose 1-phosphate aldolase (FucA). IPTG transport to cells was the contribution of three processes: a diffusion process, and two active processes (one non-specific and another specific).</abstract><cop>Amsterdam</cop><pub>Elsevier B.V</pub><doi>10.1016/j.bej.2014.08.017</doi><tpages>10</tpages></addata></record> |
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subjects | Biological and medical sciences Biotechnology E. coli Escherichia coli Fundamental and applied biological sciences. Psychology Inducer transport IPTG Lac permeases Mathematical model |
title | Quantitative modeling of inducer transport in fed-batch cultures of Escherichia coli |
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