Comparison of complete nucleotide sequences and genome organization of six distinct cherry leaf roll virus isolates from New Zealand
The complete genomic sequences of six phenotypically distinct cherry leaf roll virus (CLRV) isolates from New Zealand were determined and compared. RNA1 and RNA2 are 7,919-7,921 and 6,361-6,363 nucleotides in length, respectively, excluding the poly(A) tails. Both genome segments contain a single op...
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| Veröffentlicht in: | Archives of virology 2014-12, Vol.159 (12), p.3443-3445 |
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| description | The complete genomic sequences of six phenotypically distinct cherry leaf roll virus (CLRV) isolates from New Zealand were determined and compared. RNA1 and RNA2 are 7,919-7,921 and 6,361-6,363 nucleotides in length, respectively, excluding the poly(A) tails. Both genome segments contain a single open reading frame and encode one polyprotein of 2,113 amino acids for RNA1 and 1,590 aa for RNA2, with corresponding molecular masses of 235.5-236.1 kDa and 174.2-174.8 kDa, respectively. The six RNA1 sequences share 92.0-99.7 % nt and 97.0-99.5 % aa similarity, and the RNA2 sequences share 91.4-99.8 % nt and 94.3-99.7 % aa similarity. Phylogenetic analysis established close associations between the six New Zealand CLRV isolates and members of the subgroup C nepoviruses. |
| doi_str_mv | 10.1007/s00705-014-2196-y |
| format | Article |
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Phylogenetic analysis established close associations between the six New Zealand CLRV isolates and members of the subgroup C nepoviruses.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-014-2196-y</identifier><identifier>PMID: 25091745</identifier><language>eng</language><publisher>Vienna: Springer-Verlag</publisher><subject>amino acids ; Annotated Sequence Record ; Biomedical and Life Sciences ; Biomedicine ; Cherry leaf roll virus ; Cluster Analysis ; Gene Order ; genome ; Genome, Viral ; Genomes ; Infectious Diseases ; Medical Microbiology ; Molecular Sequence Data ; Molecular Weight ; Nepovirus - classification ; Nepovirus - genetics ; Nepovirus - isolation & purification ; New Zealand ; nucleotides ; Open Reading Frames ; Phylogenetics ; Phylogeny ; Plant Leaves - virology ; Polyproteins - chemistry ; Polyproteins - genetics ; RNA, Viral - genetics ; Sequence Analysis, DNA ; Sequence Homology, Nucleic Acid ; Synteny ; Viral Proteins - chemistry ; Viral Proteins - genetics ; Virology ; Viruses</subject><ispartof>Archives of virology, 2014-12, Vol.159 (12), p.3443-3445</ispartof><rights>Springer-Verlag Wien 2014</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c499t-606118ce55d379d3c9e8782c35f44e9fc5b6a6d8fae706341980924bc06d73fc3</citedby><cites>FETCH-LOGICAL-c499t-606118ce55d379d3c9e8782c35f44e9fc5b6a6d8fae706341980924bc06d73fc3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-014-2196-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-014-2196-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25091745$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Woo, E. N. Y</creatorcontrib><creatorcontrib>Pearson, M. N</creatorcontrib><title>Comparison of complete nucleotide sequences and genome organization of six distinct cherry leaf roll virus isolates from New Zealand</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>The complete genomic sequences of six phenotypically distinct cherry leaf roll virus (CLRV) isolates from New Zealand were determined and compared. RNA1 and RNA2 are 7,919-7,921 and 6,361-6,363 nucleotides in length, respectively, excluding the poly(A) tails. Both genome segments contain a single open reading frame and encode one polyprotein of 2,113 amino acids for RNA1 and 1,590 aa for RNA2, with corresponding molecular masses of 235.5-236.1 kDa and 174.2-174.8 kDa, respectively. The six RNA1 sequences share 92.0-99.7 % nt and 97.0-99.5 % aa similarity, and the RNA2 sequences share 91.4-99.8 % nt and 94.3-99.7 % aa similarity. Phylogenetic analysis established close associations between the six New Zealand CLRV isolates and members of the subgroup C nepoviruses.</description><subject>amino acids</subject><subject>Annotated Sequence Record</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Cherry leaf roll virus</subject><subject>Cluster Analysis</subject><subject>Gene Order</subject><subject>genome</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Molecular Weight</subject><subject>Nepovirus - classification</subject><subject>Nepovirus - genetics</subject><subject>Nepovirus - isolation & purification</subject><subject>New Zealand</subject><subject>nucleotides</subject><subject>Open Reading Frames</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Leaves - virology</subject><subject>Polyproteins - chemistry</subject><subject>Polyproteins - genetics</subject><subject>RNA, Viral - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Synteny</subject><subject>Viral Proteins - chemistry</subject><subject>Viral Proteins - genetics</subject><subject>Virology</subject><subject>Viruses</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkjuP1DAUhS0EYoeFH0ADlmhoAtfxu0Sj5SGtoIBtaCyPczN4lcSDnQBDzQ_HoywIUSAaW77-zrm-OibkIYNnDEA_L3UB2QATTcusao63yIYJ3jZGW3ObbICDaIwCc0bulXINUAtc3iVnrQTLtJAb8mObxoPPsaSJpp6GehpwRjotYcA0xw5pwc8LTgEL9VNH9zilEWnKez_F736Oq7DEb7SLZY5TmGn4hDkf6YC-pzkNA_0S81JobTL4ufr0OY30LX6lH9EP1fQ-udP7oeCDm_2cXL28-LB93Vy-e_Vm--KyCcLauVGgGDMBpey4th0PFo02beCyFwJtH-ROedWZ3qMGxQWzBmwrdgFUp3kf-Dl5uvoecqozldmNsQQc6hswLcUx1WqrhJHqf9AWpDIgKvrkL_Q6LXmqg5wokNxAayvFVirkVErG3h1yHH0-OgbulKZb03Q1TXdK0x2r5tGN87Ibsfut-BVfBdoVKPVq2mP-o_U_XB-vot4n5_c1e3f1vgUm6_-wmoPmPwFX0LT8</recordid><startdate>20141201</startdate><enddate>20141201</enddate><creator>Woo, E. 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N</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c499t-606118ce55d379d3c9e8782c35f44e9fc5b6a6d8fae706341980924bc06d73fc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>amino acids</topic><topic>Annotated Sequence Record</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Cherry leaf roll virus</topic><topic>Cluster Analysis</topic><topic>Gene Order</topic><topic>genome</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Infectious Diseases</topic><topic>Medical Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Molecular Weight</topic><topic>Nepovirus - classification</topic><topic>Nepovirus - genetics</topic><topic>Nepovirus - isolation & purification</topic><topic>New Zealand</topic><topic>nucleotides</topic><topic>Open Reading Frames</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Leaves - virology</topic><topic>Polyproteins - chemistry</topic><topic>Polyproteins - genetics</topic><topic>RNA, Viral - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>Synteny</topic><topic>Viral Proteins - chemistry</topic><topic>Viral Proteins - genetics</topic><topic>Virology</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Woo, E. 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N. Y</au><au>Pearson, M. N</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comparison of complete nucleotide sequences and genome organization of six distinct cherry leaf roll virus isolates from New Zealand</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2014-12-01</date><risdate>2014</risdate><volume>159</volume><issue>12</issue><spage>3443</spage><epage>3445</epage><pages>3443-3445</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>The complete genomic sequences of six phenotypically distinct cherry leaf roll virus (CLRV) isolates from New Zealand were determined and compared. RNA1 and RNA2 are 7,919-7,921 and 6,361-6,363 nucleotides in length, respectively, excluding the poly(A) tails. Both genome segments contain a single open reading frame and encode one polyprotein of 2,113 amino acids for RNA1 and 1,590 aa for RNA2, with corresponding molecular masses of 235.5-236.1 kDa and 174.2-174.8 kDa, respectively. The six RNA1 sequences share 92.0-99.7 % nt and 97.0-99.5 % aa similarity, and the RNA2 sequences share 91.4-99.8 % nt and 94.3-99.7 % aa similarity. Phylogenetic analysis established close associations between the six New Zealand CLRV isolates and members of the subgroup C nepoviruses.</abstract><cop>Vienna</cop><pub>Springer-Verlag</pub><pmid>25091745</pmid><doi>10.1007/s00705-014-2196-y</doi><tpages>3</tpages></addata></record> |
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| subjects | amino acids Annotated Sequence Record Biomedical and Life Sciences Biomedicine Cherry leaf roll virus Cluster Analysis Gene Order genome Genome, Viral Genomes Infectious Diseases Medical Microbiology Molecular Sequence Data Molecular Weight Nepovirus - classification Nepovirus - genetics Nepovirus - isolation & purification New Zealand nucleotides Open Reading Frames Phylogenetics Phylogeny Plant Leaves - virology Polyproteins - chemistry Polyproteins - genetics RNA, Viral - genetics Sequence Analysis, DNA Sequence Homology, Nucleic Acid Synteny Viral Proteins - chemistry Viral Proteins - genetics Virology Viruses |
| title | Comparison of complete nucleotide sequences and genome organization of six distinct cherry leaf roll virus isolates from New Zealand |
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