Analysis of the complete genome of a virus associated with twisted leaf disease of cherry reveals evidence of a close relationship to unassigned viruses in the family Betaflexiviridae
The genome of a virus associated with cherry twisted leaf disease (CTLaV, isolate ZH) was sequenced and consists of 8431 nucleotides, excluding a poly(A) tail at the 3′ end. Genome analysis shows that CTLaV-ZH represents a new and distinct species and has a genome organization similar to those of un...
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| Veröffentlicht in: | Archives of virology 2014-09, Vol.159 (9), p.2463-2468 |
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| creator | James, Delano Varga, Aniko Lye, David |
| description | The genome of a virus associated with cherry twisted leaf disease (CTLaV, isolate ZH) was sequenced and consists of 8431 nucleotides, excluding a poly(A) tail at the 3′ end. Genome analysis shows that CTLaV-ZH represents a new and distinct species and has a genome organization similar to those of unassigned viruses in the family Betaflexiviridae. The CTLaV-ZH genome has five open reading frames (ORFs), with putative ORFs within ORF2 and ORF5, identified as ORF2a and ORF5a, respectively. The AUG start codons of ORF2a and ORF5a are in contexts suitable for efficient translation, with appropriate stop codons in frame. |
| doi_str_mv | 10.1007/s00705-014-2075-6 |
| format | Article |
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Genome analysis shows that CTLaV-ZH represents a new and distinct species and has a genome organization similar to those of unassigned viruses in the family Betaflexiviridae. The CTLaV-ZH genome has five open reading frames (ORFs), with putative ORFs within ORF2 and ORF5, identified as ORF2a and ORF5a, respectively. 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Genome analysis shows that CTLaV-ZH represents a new and distinct species and has a genome organization similar to those of unassigned viruses in the family Betaflexiviridae. The CTLaV-ZH genome has five open reading frames (ORFs), with putative ORFs within ORF2 and ORF5, identified as ORF2a and ORF5a, respectively. The AUG start codons of ORF2a and ORF5a are in contexts suitable for efficient translation, with appropriate stop codons in frame.</description><subject>Betaflexiviridae</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Brief Report</subject><subject>cherries</subject><subject>Cluster Analysis</subject><subject>Disease</subject><subject>Gene Order</subject><subject>genome</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Infectious Diseases</subject><subject>leaves</subject><subject>Medical Microbiology</subject><subject>Molecular Sequence Data</subject><subject>nucleotides</subject><subject>Open Reading Frames</subject><subject>Phylogeny</subject><subject>Plant Diseases - virology</subject><subject>Plant Viruses - genetics</subject><subject>Plant Viruses - isolation & purification</subject><subject>Prunus</subject><subject>Prunus - virology</subject><subject>RNA Viruses - genetics</subject><subject>RNA Viruses - isolation & purification</subject><subject>RNA, Viral - 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Genome analysis shows that CTLaV-ZH represents a new and distinct species and has a genome organization similar to those of unassigned viruses in the family Betaflexiviridae. The CTLaV-ZH genome has five open reading frames (ORFs), with putative ORFs within ORF2 and ORF5, identified as ORF2a and ORF5a, respectively. The AUG start codons of ORF2a and ORF5a are in contexts suitable for efficient translation, with appropriate stop codons in frame.</abstract><cop>Vienna</cop><pub>Springer-Verlag</pub><pmid>24737006</pmid><doi>10.1007/s00705-014-2075-6</doi><tpages>6</tpages></addata></record> |
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| ispartof | Archives of virology, 2014-09, Vol.159 (9), p.2463-2468 |
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| subjects | Betaflexiviridae Biomedical and Life Sciences Biomedicine Brief Report cherries Cluster Analysis Disease Gene Order genome Genome, Viral Genomes Infectious Diseases leaves Medical Microbiology Molecular Sequence Data nucleotides Open Reading Frames Phylogeny Plant Diseases - virology Plant Viruses - genetics Plant Viruses - isolation & purification Prunus Prunus - virology RNA Viruses - genetics RNA Viruses - isolation & purification RNA, Viral - genetics Sequence Analysis, DNA stop codon Synteny translation (genetics) unassigned viruses Virology Viruses |
| title | Analysis of the complete genome of a virus associated with twisted leaf disease of cherry reveals evidence of a close relationship to unassigned viruses in the family Betaflexiviridae |
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