Analysis of chemosensory gene families in the beetle Monochamus alternatus and its parasitoid Dastarcus helophoroides
We assembled antennal transcriptomes of pest Monochamus alternatus and its parasitoid Dastarcus helophoroides to identify the members of the major chemosensory multi-gene families. Gene ontology (GO) annotation indicated that the relative abundance of transcripts associated with specific GO terms wa...
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| Veröffentlicht in: | Comparative biochemistry and physiology. Part D, Genomics & proteomics Genomics & proteomics, 2014-09, Vol.11, p.1-8 |
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| container_title | Comparative biochemistry and physiology. Part D, Genomics & proteomics |
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| creator | Wang, Juan Li, Dong-Zhen Min, Shui-Fa Mi, Feng Zhou, Shuang-Shuang Wang, Man-Qun |
| description | We assembled antennal transcriptomes of pest Monochamus alternatus and its parasitoid Dastarcus helophoroides to identify the members of the major chemosensory multi-gene families. Gene ontology (GO) annotation indicated that the relative abundance of transcripts associated with specific GO terms was highly similar in the two species. In chemosensory gene families, we identified 52 transcripts encoding putative odorant-binding proteins (OBPs), 19 chemosensory proteins (CSPs), 10 olfactory receptors (ORs), 8 ionotropic receptors (IRs), 2 gustatory receptors (GRs), and 5 sensory neuron membrane proteins (SNMPs) in these two transcriptomes. Predicted protein sequences were compared with Dendroctonus ponderosae, Tribolium castaneum and Drosophila melanogaster. The results of phylogenetic trees showed that some clusters included only OBPs or CSPs from D. helophoroides, some clusters included only OBPs or CSPs from M. alternatus, while some clusters included OBPs or CSPs from both M. alternatus and D. helophoroides. The identification of the chemosensory genes and the phylogenetic relationship of these genes between two species might provide new ideas for controlling M. alternatus and improving current strategies for biological control. |
| doi_str_mv | 10.1016/j.cbd.2014.05.001 |
| format | Article |
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Gene ontology (GO) annotation indicated that the relative abundance of transcripts associated with specific GO terms was highly similar in the two species. In chemosensory gene families, we identified 52 transcripts encoding putative odorant-binding proteins (OBPs), 19 chemosensory proteins (CSPs), 10 olfactory receptors (ORs), 8 ionotropic receptors (IRs), 2 gustatory receptors (GRs), and 5 sensory neuron membrane proteins (SNMPs) in these two transcriptomes. Predicted protein sequences were compared with Dendroctonus ponderosae, Tribolium castaneum and Drosophila melanogaster. The results of phylogenetic trees showed that some clusters included only OBPs or CSPs from D. helophoroides, some clusters included only OBPs or CSPs from M. alternatus, while some clusters included OBPs or CSPs from both M. alternatus and D. helophoroides. The identification of the chemosensory genes and the phylogenetic relationship of these genes between two species might provide new ideas for controlling M. alternatus and improving current strategies for biological control.</description><identifier>ISSN: 1744-117X</identifier><identifier>EISSN: 1878-0407</identifier><identifier>DOI: 10.1016/j.cbd.2014.05.001</identifier><identifier>PMID: 24893337</identifier><language>eng</language><publisher>Netherlands: Elsevier Inc</publisher><subject>Animals ; Arthropod Antennae - chemistry ; Coleoptera - chemistry ; Coleoptera - genetics ; Dastarcus helophoroides ; Female ; Insect Proteins - chemistry ; Insect Proteins - classification ; Insect Proteins - genetics ; Male ; Molecular Sequence Annotation ; Monochamus alternatus ; Neighbor-joining trees ; Olfactory proteins ; Phylogeny ; Receptors, Odorant - chemistry ; Receptors, Odorant - classification ; Receptors, Odorant - genetics ; Transcriptome</subject><ispartof>Comparative biochemistry and physiology. Part D, Genomics & proteomics, 2014-09, Vol.11, p.1-8</ispartof><rights>2014 Elsevier Inc.</rights><rights>Copyright © 2014 Elsevier Inc. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c353t-c8d1334e30489277af774bb02098d350e729d0986b2d1f435a27f782195da8e43</citedby><cites>FETCH-LOGICAL-c353t-c8d1334e30489277af774bb02098d350e729d0986b2d1f435a27f782195da8e43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.cbd.2014.05.001$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24893337$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Juan</creatorcontrib><creatorcontrib>Li, Dong-Zhen</creatorcontrib><creatorcontrib>Min, Shui-Fa</creatorcontrib><creatorcontrib>Mi, Feng</creatorcontrib><creatorcontrib>Zhou, Shuang-Shuang</creatorcontrib><creatorcontrib>Wang, Man-Qun</creatorcontrib><title>Analysis of chemosensory gene families in the beetle Monochamus alternatus and its parasitoid Dastarcus helophoroides</title><title>Comparative biochemistry and physiology. Part D, Genomics & proteomics</title><addtitle>Comp Biochem Physiol Part D Genomics Proteomics</addtitle><description>We assembled antennal transcriptomes of pest Monochamus alternatus and its parasitoid Dastarcus helophoroides to identify the members of the major chemosensory multi-gene families. Gene ontology (GO) annotation indicated that the relative abundance of transcripts associated with specific GO terms was highly similar in the two species. In chemosensory gene families, we identified 52 transcripts encoding putative odorant-binding proteins (OBPs), 19 chemosensory proteins (CSPs), 10 olfactory receptors (ORs), 8 ionotropic receptors (IRs), 2 gustatory receptors (GRs), and 5 sensory neuron membrane proteins (SNMPs) in these two transcriptomes. Predicted protein sequences were compared with Dendroctonus ponderosae, Tribolium castaneum and Drosophila melanogaster. The results of phylogenetic trees showed that some clusters included only OBPs or CSPs from D. helophoroides, some clusters included only OBPs or CSPs from M. alternatus, while some clusters included OBPs or CSPs from both M. alternatus and D. helophoroides. The identification of the chemosensory genes and the phylogenetic relationship of these genes between two species might provide new ideas for controlling M. alternatus and improving current strategies for biological control.</description><subject>Animals</subject><subject>Arthropod Antennae - chemistry</subject><subject>Coleoptera - chemistry</subject><subject>Coleoptera - genetics</subject><subject>Dastarcus helophoroides</subject><subject>Female</subject><subject>Insect Proteins - chemistry</subject><subject>Insect Proteins - classification</subject><subject>Insect Proteins - genetics</subject><subject>Male</subject><subject>Molecular Sequence Annotation</subject><subject>Monochamus alternatus</subject><subject>Neighbor-joining trees</subject><subject>Olfactory proteins</subject><subject>Phylogeny</subject><subject>Receptors, Odorant - chemistry</subject><subject>Receptors, Odorant - classification</subject><subject>Receptors, Odorant - genetics</subject><subject>Transcriptome</subject><issn>1744-117X</issn><issn>1878-0407</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kE9r3DAQxUVoSdIkH6CXoGMvdiVLtmxyCulfSOmlhd6ELI1rLba00ciF_fbVskmPPc1j5s1j5kfIW85qznj3flfb0dUN47Jmbc0YPyOXvFd9xSRTr4pWUlacq18X5A3ijjHZDbI9JxeN7AchhLok230wywE90jhRO8MaEQLGdKC_IQCdzOoXD0h9oHkGOgLkBei3GKKdzbohNUuGFEw-yuCoz0j3Jhn0OXpHPxjMJtkynGGJ-zmm0gW8Jq8nsyDcPNcr8vPTxx8PX6rH75-_Ptw_Vla0Ile2d1wICYKVexulzKSUHEfWsKF3omWgmsEV3Y2N45MUrWnUpPqGD60zPUhxRd6dcvcpPm2AWa8eLSyLCRA31Lzt-NANgzpa-clqU0RMMOl98qtJB82ZPtLWO11o6yNtzVpdaJed2-f4bVzB_dt4wVsMdycDlCf_eEgarYdgwfkENmsX_X_i_wJlOZEP</recordid><startdate>20140901</startdate><enddate>20140901</enddate><creator>Wang, Juan</creator><creator>Li, Dong-Zhen</creator><creator>Min, Shui-Fa</creator><creator>Mi, Feng</creator><creator>Zhou, Shuang-Shuang</creator><creator>Wang, Man-Qun</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20140901</creationdate><title>Analysis of chemosensory gene families in the beetle Monochamus alternatus and its parasitoid Dastarcus helophoroides</title><author>Wang, Juan ; Li, Dong-Zhen ; Min, Shui-Fa ; Mi, Feng ; Zhou, Shuang-Shuang ; Wang, Man-Qun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c353t-c8d1334e30489277af774bb02098d350e729d0986b2d1f435a27f782195da8e43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Animals</topic><topic>Arthropod Antennae - chemistry</topic><topic>Coleoptera - chemistry</topic><topic>Coleoptera - genetics</topic><topic>Dastarcus helophoroides</topic><topic>Female</topic><topic>Insect Proteins - chemistry</topic><topic>Insect Proteins - classification</topic><topic>Insect Proteins - genetics</topic><topic>Male</topic><topic>Molecular Sequence Annotation</topic><topic>Monochamus alternatus</topic><topic>Neighbor-joining trees</topic><topic>Olfactory proteins</topic><topic>Phylogeny</topic><topic>Receptors, Odorant - chemistry</topic><topic>Receptors, Odorant - classification</topic><topic>Receptors, Odorant - genetics</topic><topic>Transcriptome</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Juan</creatorcontrib><creatorcontrib>Li, Dong-Zhen</creatorcontrib><creatorcontrib>Min, Shui-Fa</creatorcontrib><creatorcontrib>Mi, Feng</creatorcontrib><creatorcontrib>Zhou, Shuang-Shuang</creatorcontrib><creatorcontrib>Wang, Man-Qun</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Comparative biochemistry and physiology. Part D, Genomics & proteomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Juan</au><au>Li, Dong-Zhen</au><au>Min, Shui-Fa</au><au>Mi, Feng</au><au>Zhou, Shuang-Shuang</au><au>Wang, Man-Qun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Analysis of chemosensory gene families in the beetle Monochamus alternatus and its parasitoid Dastarcus helophoroides</atitle><jtitle>Comparative biochemistry and physiology. Part D, Genomics & proteomics</jtitle><addtitle>Comp Biochem Physiol Part D Genomics Proteomics</addtitle><date>2014-09-01</date><risdate>2014</risdate><volume>11</volume><spage>1</spage><epage>8</epage><pages>1-8</pages><issn>1744-117X</issn><eissn>1878-0407</eissn><abstract>We assembled antennal transcriptomes of pest Monochamus alternatus and its parasitoid Dastarcus helophoroides to identify the members of the major chemosensory multi-gene families. Gene ontology (GO) annotation indicated that the relative abundance of transcripts associated with specific GO terms was highly similar in the two species. In chemosensory gene families, we identified 52 transcripts encoding putative odorant-binding proteins (OBPs), 19 chemosensory proteins (CSPs), 10 olfactory receptors (ORs), 8 ionotropic receptors (IRs), 2 gustatory receptors (GRs), and 5 sensory neuron membrane proteins (SNMPs) in these two transcriptomes. Predicted protein sequences were compared with Dendroctonus ponderosae, Tribolium castaneum and Drosophila melanogaster. The results of phylogenetic trees showed that some clusters included only OBPs or CSPs from D. helophoroides, some clusters included only OBPs or CSPs from M. alternatus, while some clusters included OBPs or CSPs from both M. alternatus and D. helophoroides. The identification of the chemosensory genes and the phylogenetic relationship of these genes between two species might provide new ideas for controlling M. alternatus and improving current strategies for biological control.</abstract><cop>Netherlands</cop><pub>Elsevier Inc</pub><pmid>24893337</pmid><doi>10.1016/j.cbd.2014.05.001</doi><tpages>8</tpages></addata></record> |
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| subjects | Animals Arthropod Antennae - chemistry Coleoptera - chemistry Coleoptera - genetics Dastarcus helophoroides Female Insect Proteins - chemistry Insect Proteins - classification Insect Proteins - genetics Male Molecular Sequence Annotation Monochamus alternatus Neighbor-joining trees Olfactory proteins Phylogeny Receptors, Odorant - chemistry Receptors, Odorant - classification Receptors, Odorant - genetics Transcriptome |
| title | Analysis of chemosensory gene families in the beetle Monochamus alternatus and its parasitoid Dastarcus helophoroides |
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