Composition and physiological function of the chloroplast NADH dehydrogenase‐like complex in Marchantia polymorpha
The chloroplast NADH dehydrogenase‐like (NDH) complex mediates cyclic electron transport and chloro‐respiration and consists of five sub‐omplexes, which in angiosperms further associate with photosystem I (PSI) to form a super‐complex. In Marchantia polymorpha, 11 plastid‐encoded subunits and all th...
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description | The chloroplast NADH dehydrogenase‐like (NDH) complex mediates cyclic electron transport and chloro‐respiration and consists of five sub‐omplexes, which in angiosperms further associate with photosystem I (PSI) to form a super‐complex. In Marchantia polymorpha, 11 plastid‐encoded subunits and all the nuclear‐encoded subunits of the A, B, membrane and ferredoxin‐binding sub‐complexes are conserved. However, it is unlikely that the genome of this liverwort encodes Lhca5 and Lhca6, both of which mediate NDH–PSI super‐complex formation. It is also unlikely that the subunits of the lumen sub‐complex, PnsL1–L4, are encoded by the genome. Consistent with this in silico prediction, the results of blue‐native gel electrophoresis showed that NDH subunits were detected in a protein complex with lower molecular mass in Marchantia than the NDH–PSI super‐complex in Arabidopsis. Using the plastid transformation technique, we knocked out the ndhB gene in Marchantia. Although the wild‐type genome copies were completely segregated out, the ΔndhB lines grew like the wild‐type photoautotrophically. A post‐illumination transient increase in chlorophyll fluorescence, which reflects NDH activity in vivo in angiosperms, was absent in the thalli of the ΔndhB lines. In ruptured chloroplasts, antimycin A‐insensitive, and ferredoxin‐dependent plastoquinone reduction was impaired, suggesting that chloroplast NDH mediates similar electron transport in Marchantia and Arabidopsis, despite its possible difference in structure. As in angiosperms, linear electron transport was not strongly affected in the ΔndhB lines. However, the plastoquinone pool was slightly more reduced at low light intensity, suggesting that chloroplast NDH functions in redox balancing of the inter system, especially under low light conditions. |
doi_str_mv | 10.1111/j.1365-313x.2012.05115.x |
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In Marchantia polymorpha, 11 plastid‐encoded subunits and all the nuclear‐encoded subunits of the A, B, membrane and ferredoxin‐binding sub‐complexes are conserved. However, it is unlikely that the genome of this liverwort encodes Lhca5 and Lhca6, both of which mediate NDH–PSI super‐complex formation. It is also unlikely that the subunits of the lumen sub‐complex, PnsL1–L4, are encoded by the genome. Consistent with this in silico prediction, the results of blue‐native gel electrophoresis showed that NDH subunits were detected in a protein complex with lower molecular mass in Marchantia than the NDH–PSI super‐complex in Arabidopsis. Using the plastid transformation technique, we knocked out the ndhB gene in Marchantia. Although the wild‐type genome copies were completely segregated out, the ΔndhB lines grew like the wild‐type photoautotrophically. A post‐illumination transient increase in chlorophyll fluorescence, which reflects NDH activity in vivo in angiosperms, was absent in the thalli of the ΔndhB lines. In ruptured chloroplasts, antimycin A‐insensitive, and ferredoxin‐dependent plastoquinone reduction was impaired, suggesting that chloroplast NDH mediates similar electron transport in Marchantia and Arabidopsis, despite its possible difference in structure. As in angiosperms, linear electron transport was not strongly affected in the ΔndhB lines. However, the plastoquinone pool was slightly more reduced at low light intensity, suggesting that chloroplast NDH functions in redox balancing of the inter system, especially under low light conditions.</description><identifier>ISSN: 0960-7412</identifier><identifier>EISSN: 1365-313X</identifier><identifier>DOI: 10.1111/j.1365-313x.2012.05115.x</identifier><identifier>PMID: 22862786</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>Antimycin A - pharmacology ; Arabidopsis ; Arabidopsis - enzymology ; Arabidopsis - genetics ; Arabidopsis - physiology ; Biological and medical sciences ; Chlorophyll ; chloroplast ; Chloroplasts ; Chloroplasts - enzymology ; Chloroplasts - genetics ; Chloroplasts - physiology ; electron transfer ; Electron Transport ; Electrophoresis, Polyacrylamide Gel - methods ; Enzyme Activation ; Enzymes ; Fluorescence ; Fundamental and applied biological sciences. Psychology ; gel electrophoresis ; Gene Knockout Techniques ; genes ; Genes, Chloroplast ; Genome, Plant ; Genomics ; Light ; light intensity ; Light-Harvesting Protein Complexes - genetics ; Light-Harvesting Protein Complexes - metabolism ; Light-Harvesting Protein Complexes - physiology ; Marchantia ; Marchantia - enzymology ; Marchantia - genetics ; Marchantia - physiology ; Marchantia polymorpha ; Metabolism ; molecular weight ; mosses and liverworts ; NAD (coenzyme) ; NADH Dehydrogenase - genetics ; NADH Dehydrogenase - metabolism ; NADH Dehydrogenase - physiology ; NDH ; Oxidation-Reduction ; photosynthesis ; Photosynthesis, respiration. Anabolism, catabolism ; photosystem I ; Photosystem I Protein Complex - genetics ; Photosystem I Protein Complex - metabolism ; Photosystem II Protein Complex - genetics ; Photosystem II Protein Complex - metabolism ; Plant biology ; Plant physiology and development ; plastid transformation ; Plastoquinone - metabolism ; prediction ; thallus ; Thylakoid Membrane Proteins - genetics ; Thylakoid Membrane Proteins - metabolism</subject><ispartof>The Plant journal : for cell and molecular biology, 2012-11, Vol.72 (4), p.683-693</ispartof><rights>2012 The Authors. The Plant Journal © 2012 Blackwell Publishing Ltd</rights><rights>2015 INIST-CNRS</rights><rights>2012 The Authors. The Plant Journal © 2012 Blackwell Publishing Ltd.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c6295-ec0bdefd2cabafd7d240cb2ae8b0c55bb04cebb886e4242adaead07fd309e2b93</citedby><cites>FETCH-LOGICAL-c6295-ec0bdefd2cabafd7d240cb2ae8b0c55bb04cebb886e4242adaead07fd309e2b93</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1365-313X.2012.05115.x$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1365-313X.2012.05115.x$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,1427,27901,27902,45550,45551,46384,46808</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=26589087$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22862786$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ueda, Minoru</creatorcontrib><creatorcontrib>Kuniyoshi, Tetsuki</creatorcontrib><creatorcontrib>Yamamoto, Hiroshi</creatorcontrib><creatorcontrib>Sugimoto, Kazuhiko</creatorcontrib><creatorcontrib>Ishizaki, Kimitsune</creatorcontrib><creatorcontrib>Kohchi, Takayuki</creatorcontrib><creatorcontrib>Nishimura, Yoshiki</creatorcontrib><creatorcontrib>Shikanai, Toshiharu</creatorcontrib><title>Composition and physiological function of the chloroplast NADH dehydrogenase‐like complex in Marchantia polymorpha</title><title>The Plant journal : for cell and molecular biology</title><addtitle>Plant J</addtitle><description>The chloroplast NADH dehydrogenase‐like (NDH) complex mediates cyclic electron transport and chloro‐respiration and consists of five sub‐omplexes, which in angiosperms further associate with photosystem I (PSI) to form a super‐complex. In Marchantia polymorpha, 11 plastid‐encoded subunits and all the nuclear‐encoded subunits of the A, B, membrane and ferredoxin‐binding sub‐complexes are conserved. However, it is unlikely that the genome of this liverwort encodes Lhca5 and Lhca6, both of which mediate NDH–PSI super‐complex formation. It is also unlikely that the subunits of the lumen sub‐complex, PnsL1–L4, are encoded by the genome. Consistent with this in silico prediction, the results of blue‐native gel electrophoresis showed that NDH subunits were detected in a protein complex with lower molecular mass in Marchantia than the NDH–PSI super‐complex in Arabidopsis. Using the plastid transformation technique, we knocked out the ndhB gene in Marchantia. Although the wild‐type genome copies were completely segregated out, the ΔndhB lines grew like the wild‐type photoautotrophically. A post‐illumination transient increase in chlorophyll fluorescence, which reflects NDH activity in vivo in angiosperms, was absent in the thalli of the ΔndhB lines. In ruptured chloroplasts, antimycin A‐insensitive, and ferredoxin‐dependent plastoquinone reduction was impaired, suggesting that chloroplast NDH mediates similar electron transport in Marchantia and Arabidopsis, despite its possible difference in structure. As in angiosperms, linear electron transport was not strongly affected in the ΔndhB lines. However, the plastoquinone pool was slightly more reduced at low light intensity, suggesting that chloroplast NDH functions in redox balancing of the inter system, especially under low light conditions.</description><subject>Antimycin A - pharmacology</subject><subject>Arabidopsis</subject><subject>Arabidopsis - enzymology</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - physiology</subject><subject>Biological and medical sciences</subject><subject>Chlorophyll</subject><subject>chloroplast</subject><subject>Chloroplasts</subject><subject>Chloroplasts - enzymology</subject><subject>Chloroplasts - genetics</subject><subject>Chloroplasts - physiology</subject><subject>electron transfer</subject><subject>Electron Transport</subject><subject>Electrophoresis, Polyacrylamide Gel - methods</subject><subject>Enzyme Activation</subject><subject>Enzymes</subject><subject>Fluorescence</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>gel electrophoresis</subject><subject>Gene Knockout Techniques</subject><subject>genes</subject><subject>Genes, Chloroplast</subject><subject>Genome, Plant</subject><subject>Genomics</subject><subject>Light</subject><subject>light intensity</subject><subject>Light-Harvesting Protein Complexes - genetics</subject><subject>Light-Harvesting Protein Complexes - metabolism</subject><subject>Light-Harvesting Protein Complexes - physiology</subject><subject>Marchantia</subject><subject>Marchantia - enzymology</subject><subject>Marchantia - genetics</subject><subject>Marchantia - physiology</subject><subject>Marchantia polymorpha</subject><subject>Metabolism</subject><subject>molecular weight</subject><subject>mosses and liverworts</subject><subject>NAD (coenzyme)</subject><subject>NADH Dehydrogenase - genetics</subject><subject>NADH Dehydrogenase - metabolism</subject><subject>NADH Dehydrogenase - physiology</subject><subject>NDH</subject><subject>Oxidation-Reduction</subject><subject>photosynthesis</subject><subject>Photosynthesis, respiration. Anabolism, catabolism</subject><subject>photosystem I</subject><subject>Photosystem I Protein Complex - genetics</subject><subject>Photosystem I Protein Complex - metabolism</subject><subject>Photosystem II Protein Complex - genetics</subject><subject>Photosystem II Protein Complex - metabolism</subject><subject>Plant biology</subject><subject>Plant physiology and development</subject><subject>plastid transformation</subject><subject>Plastoquinone - metabolism</subject><subject>prediction</subject><subject>thallus</subject><subject>Thylakoid Membrane Proteins - genetics</subject><subject>Thylakoid Membrane Proteins - metabolism</subject><issn>0960-7412</issn><issn>1365-313X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkctu1DAUhiMEotPCK4AlhMRmgu3YuSxYVMOloHKRaCV21ontTDw4cWpn1MmOR-AZeRKczhQkFoA3tnS-38c-X5IgglMS1_NNSrKcLzOS7VKKCU0xJ4SnuzvJ4rbw5W6ywFWOlwUj9Cg5DmGDMSmynN1Pjigtc1qU-SIZV64bXDCjcT2CXqGhnYJx1q2NBIuabS9vSq5BY6uRbK3zbrAQRvTh9OUZUrqdlHdr3UPQP759t-ZrpOKdVu-Q6dF78LKFfjSABmenzvmhhQfJvQZs0A8P-0ly-frVxepsef7xzdvV6flS5rTiSy1xrXSjqIQaGlUoyrCsKeiyxpLzusZM6rouy1wzyigo0KBw0agMV5rWVXaSPNvfO3h3tdVhFJ0JUlsLvXbbIAjP4_AKFsf1T5RkVU5KTmlEn_yBbtzW9_EjkaI8Y6zEM1XuKeldCF43YvCmAz8JgsUsUWzE7ErMrsQsUdxIFLsYfXRosK07rX4Fb61F4OkBgBAtNR56acJvLudlhcsici_23LWxevrvB4iLT-_mU8w_3ucbcALWPva4_BxJhjHOKlKxvxIUV5xnPwGWkc3c</recordid><startdate>201211</startdate><enddate>201211</enddate><creator>Ueda, Minoru</creator><creator>Kuniyoshi, Tetsuki</creator><creator>Yamamoto, Hiroshi</creator><creator>Sugimoto, Kazuhiko</creator><creator>Ishizaki, Kimitsune</creator><creator>Kohchi, Takayuki</creator><creator>Nishimura, Yoshiki</creator><creator>Shikanai, Toshiharu</creator><general>Blackwell Publishing Ltd</general><general>Blackwell</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7QP</scope><scope>7QR</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope></search><sort><creationdate>201211</creationdate><title>Composition and physiological function of the chloroplast NADH dehydrogenase‐like complex in Marchantia polymorpha</title><author>Ueda, Minoru ; Kuniyoshi, Tetsuki ; Yamamoto, Hiroshi ; Sugimoto, Kazuhiko ; Ishizaki, Kimitsune ; Kohchi, Takayuki ; Nishimura, Yoshiki ; Shikanai, Toshiharu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c6295-ec0bdefd2cabafd7d240cb2ae8b0c55bb04cebb886e4242adaead07fd309e2b93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Antimycin A - pharmacology</topic><topic>Arabidopsis</topic><topic>Arabidopsis - enzymology</topic><topic>Arabidopsis - genetics</topic><topic>Arabidopsis - physiology</topic><topic>Biological and medical sciences</topic><topic>Chlorophyll</topic><topic>chloroplast</topic><topic>Chloroplasts</topic><topic>Chloroplasts - enzymology</topic><topic>Chloroplasts - genetics</topic><topic>Chloroplasts - physiology</topic><topic>electron transfer</topic><topic>Electron Transport</topic><topic>Electrophoresis, Polyacrylamide Gel - methods</topic><topic>Enzyme Activation</topic><topic>Enzymes</topic><topic>Fluorescence</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>gel electrophoresis</topic><topic>Gene Knockout Techniques</topic><topic>genes</topic><topic>Genes, Chloroplast</topic><topic>Genome, Plant</topic><topic>Genomics</topic><topic>Light</topic><topic>light intensity</topic><topic>Light-Harvesting Protein Complexes - genetics</topic><topic>Light-Harvesting Protein Complexes - metabolism</topic><topic>Light-Harvesting Protein Complexes - physiology</topic><topic>Marchantia</topic><topic>Marchantia - enzymology</topic><topic>Marchantia - genetics</topic><topic>Marchantia - physiology</topic><topic>Marchantia polymorpha</topic><topic>Metabolism</topic><topic>molecular weight</topic><topic>mosses and liverworts</topic><topic>NAD (coenzyme)</topic><topic>NADH Dehydrogenase - genetics</topic><topic>NADH Dehydrogenase - metabolism</topic><topic>NADH Dehydrogenase - physiology</topic><topic>NDH</topic><topic>Oxidation-Reduction</topic><topic>photosynthesis</topic><topic>Photosynthesis, respiration. Anabolism, catabolism</topic><topic>photosystem I</topic><topic>Photosystem I Protein Complex - genetics</topic><topic>Photosystem I Protein Complex - metabolism</topic><topic>Photosystem II Protein Complex - genetics</topic><topic>Photosystem II Protein Complex - metabolism</topic><topic>Plant biology</topic><topic>Plant physiology and development</topic><topic>plastid transformation</topic><topic>Plastoquinone - metabolism</topic><topic>prediction</topic><topic>thallus</topic><topic>Thylakoid Membrane Proteins - genetics</topic><topic>Thylakoid Membrane Proteins - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ueda, Minoru</creatorcontrib><creatorcontrib>Kuniyoshi, Tetsuki</creatorcontrib><creatorcontrib>Yamamoto, Hiroshi</creatorcontrib><creatorcontrib>Sugimoto, Kazuhiko</creatorcontrib><creatorcontrib>Ishizaki, Kimitsune</creatorcontrib><creatorcontrib>Kohchi, Takayuki</creatorcontrib><creatorcontrib>Nishimura, Yoshiki</creatorcontrib><creatorcontrib>Shikanai, Toshiharu</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><jtitle>The Plant journal : for cell and molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ueda, Minoru</au><au>Kuniyoshi, Tetsuki</au><au>Yamamoto, Hiroshi</au><au>Sugimoto, Kazuhiko</au><au>Ishizaki, Kimitsune</au><au>Kohchi, Takayuki</au><au>Nishimura, Yoshiki</au><au>Shikanai, Toshiharu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Composition and physiological function of the chloroplast NADH dehydrogenase‐like complex in Marchantia polymorpha</atitle><jtitle>The Plant journal : for cell and molecular biology</jtitle><addtitle>Plant J</addtitle><date>2012-11</date><risdate>2012</risdate><volume>72</volume><issue>4</issue><spage>683</spage><epage>693</epage><pages>683-693</pages><issn>0960-7412</issn><eissn>1365-313X</eissn><abstract>The chloroplast NADH dehydrogenase‐like (NDH) complex mediates cyclic electron transport and chloro‐respiration and consists of five sub‐omplexes, which in angiosperms further associate with photosystem I (PSI) to form a super‐complex. In Marchantia polymorpha, 11 plastid‐encoded subunits and all the nuclear‐encoded subunits of the A, B, membrane and ferredoxin‐binding sub‐complexes are conserved. However, it is unlikely that the genome of this liverwort encodes Lhca5 and Lhca6, both of which mediate NDH–PSI super‐complex formation. It is also unlikely that the subunits of the lumen sub‐complex, PnsL1–L4, are encoded by the genome. Consistent with this in silico prediction, the results of blue‐native gel electrophoresis showed that NDH subunits were detected in a protein complex with lower molecular mass in Marchantia than the NDH–PSI super‐complex in Arabidopsis. Using the plastid transformation technique, we knocked out the ndhB gene in Marchantia. Although the wild‐type genome copies were completely segregated out, the ΔndhB lines grew like the wild‐type photoautotrophically. A post‐illumination transient increase in chlorophyll fluorescence, which reflects NDH activity in vivo in angiosperms, was absent in the thalli of the ΔndhB lines. In ruptured chloroplasts, antimycin A‐insensitive, and ferredoxin‐dependent plastoquinone reduction was impaired, suggesting that chloroplast NDH mediates similar electron transport in Marchantia and Arabidopsis, despite its possible difference in structure. As in angiosperms, linear electron transport was not strongly affected in the ΔndhB lines. However, the plastoquinone pool was slightly more reduced at low light intensity, suggesting that chloroplast NDH functions in redox balancing of the inter system, especially under low light conditions.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>22862786</pmid><doi>10.1111/j.1365-313x.2012.05115.x</doi><tpages>11</tpages></addata></record> |
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subjects | Antimycin A - pharmacology Arabidopsis Arabidopsis - enzymology Arabidopsis - genetics Arabidopsis - physiology Biological and medical sciences Chlorophyll chloroplast Chloroplasts Chloroplasts - enzymology Chloroplasts - genetics Chloroplasts - physiology electron transfer Electron Transport Electrophoresis, Polyacrylamide Gel - methods Enzyme Activation Enzymes Fluorescence Fundamental and applied biological sciences. Psychology gel electrophoresis Gene Knockout Techniques genes Genes, Chloroplast Genome, Plant Genomics Light light intensity Light-Harvesting Protein Complexes - genetics Light-Harvesting Protein Complexes - metabolism Light-Harvesting Protein Complexes - physiology Marchantia Marchantia - enzymology Marchantia - genetics Marchantia - physiology Marchantia polymorpha Metabolism molecular weight mosses and liverworts NAD (coenzyme) NADH Dehydrogenase - genetics NADH Dehydrogenase - metabolism NADH Dehydrogenase - physiology NDH Oxidation-Reduction photosynthesis Photosynthesis, respiration. Anabolism, catabolism photosystem I Photosystem I Protein Complex - genetics Photosystem I Protein Complex - metabolism Photosystem II Protein Complex - genetics Photosystem II Protein Complex - metabolism Plant biology Plant physiology and development plastid transformation Plastoquinone - metabolism prediction thallus Thylakoid Membrane Proteins - genetics Thylakoid Membrane Proteins - metabolism |
title | Composition and physiological function of the chloroplast NADH dehydrogenase‐like complex in Marchantia polymorpha |
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