domestication and dispersal of the cultivated ramie (Boehmeria nivea (L.) Gaud. in Freyc.) determined by nuclear SSR marker analysis
Ramie (Boehmeria nivea) was domesticated in China. However, the geographic region of domestication is not exactly known. Genetic diversity and population structure of ramie and their wild relatives were assessed using microsatellite markers. The 8 microsatellite primers revealed 96 alleles in 50 ram...
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| Veröffentlicht in: | Genetic resources and crop evolution 2014, Vol.61 (1), p.55-67 |
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| creator | Liao, Liang Li, Tongjian Zhang, Jin Xu, Lingling Deng, Huisheng Han, Xingjie |
| description | Ramie (Boehmeria nivea) was domesticated in China. However, the geographic region of domestication is not exactly known. Genetic diversity and population structure of ramie and their wild relatives were assessed using microsatellite markers. The 8 microsatellite primers revealed 96 alleles in 50 ramie populations, with an average of 10.25 alleles per locus. Cultivated ramie gene pool harbors approximately 82.9 % of the SSR diversity presented in wild B. nivea var. nivea. It is suggested that ramie has experienced a relatively moderate domestication bottleneck. The distribution of genetic diversity shows that genetic diversity is relatively high in populations along the Yangtze River compared to the peripheral ones. The scatter plots of principal coordinates analysis indicated that there are three well-supported varieties in B. nivea. The NJ tree and the distribution of genetic diversity showed that ramie has been domesticated in the middle and lower regions of the Yangtze valley, and populations in Sichuan province have been introduced from this region, forming naturalized populations. |
| doi_str_mv | 10.1007/s10722-013-0014-0 |
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Gaud. in Freyc.) determined by nuclear SSR marker analysis</title><source>SpringerLink Journals - AutoHoldings</source><creator>Liao, Liang ; Li, Tongjian ; Zhang, Jin ; Xu, Lingling ; Deng, Huisheng ; Han, Xingjie</creator><creatorcontrib>Liao, Liang ; Li, Tongjian ; Zhang, Jin ; Xu, Lingling ; Deng, Huisheng ; Han, Xingjie</creatorcontrib><description>Ramie (Boehmeria nivea) was domesticated in China. However, the geographic region of domestication is not exactly known. Genetic diversity and population structure of ramie and their wild relatives were assessed using microsatellite markers. The 8 microsatellite primers revealed 96 alleles in 50 ramie populations, with an average of 10.25 alleles per locus. Cultivated ramie gene pool harbors approximately 82.9 % of the SSR diversity presented in wild B. nivea var. nivea. It is suggested that ramie has experienced a relatively moderate domestication bottleneck. The distribution of genetic diversity shows that genetic diversity is relatively high in populations along the Yangtze River compared to the peripheral ones. The scatter plots of principal coordinates analysis indicated that there are three well-supported varieties in B. nivea. The NJ tree and the distribution of genetic diversity showed that ramie has been domesticated in the middle and lower regions of the Yangtze valley, and populations in Sichuan province have been introduced from this region, forming naturalized populations.</description><identifier>ISSN: 0925-9864</identifier><identifier>EISSN: 1573-5109</identifier><identifier>DOI: 10.1007/s10722-013-0014-0</identifier><language>eng</language><publisher>Dordrecht: Springer-Verlag</publisher><subject>Agriculture ; Alleles ; Biomedical and Life Sciences ; Boehmeria nivea ; Dispersal ; Domestication ; Gene pool ; Genetic diversity ; Genetic markers ; genetic variation ; Life Sciences ; loci ; microsatellite repeats ; Microsatellites ; Plant Genetics and Genomics ; Plant Physiology ; Plant Sciences ; Plant Systematics/Taxonomy/Biogeography ; Population genetics ; Population structure ; Populations ; Primers ; ramie ; Research Article ; Rivers ; wild relatives</subject><ispartof>Genetic resources and crop evolution, 2014, Vol.61 (1), p.55-67</ispartof><rights>Springer Science+Business Media Dordrecht 2013</rights><rights>Genetic Resources and Crop Evolution is a copyright of Springer, (2013). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c373t-1dffef4683e7d97145a8413e5c74e881cff82e5beaf449c834c433dfcd97ea553</citedby><cites>FETCH-LOGICAL-c373t-1dffef4683e7d97145a8413e5c74e881cff82e5beaf449c834c433dfcd97ea553</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10722-013-0014-0$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10722-013-0014-0$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,4022,27921,27922,27923,41486,42555,51317</link.rule.ids></links><search><creatorcontrib>Liao, Liang</creatorcontrib><creatorcontrib>Li, Tongjian</creatorcontrib><creatorcontrib>Zhang, Jin</creatorcontrib><creatorcontrib>Xu, Lingling</creatorcontrib><creatorcontrib>Deng, Huisheng</creatorcontrib><creatorcontrib>Han, Xingjie</creatorcontrib><title>domestication and dispersal of the cultivated ramie (Boehmeria nivea (L.) Gaud. in Freyc.) determined by nuclear SSR marker analysis</title><title>Genetic resources and crop evolution</title><addtitle>Genet Resour Crop Evol</addtitle><description>Ramie (Boehmeria nivea) was domesticated in China. However, the geographic region of domestication is not exactly known. Genetic diversity and population structure of ramie and their wild relatives were assessed using microsatellite markers. The 8 microsatellite primers revealed 96 alleles in 50 ramie populations, with an average of 10.25 alleles per locus. Cultivated ramie gene pool harbors approximately 82.9 % of the SSR diversity presented in wild B. nivea var. nivea. It is suggested that ramie has experienced a relatively moderate domestication bottleneck. The distribution of genetic diversity shows that genetic diversity is relatively high in populations along the Yangtze River compared to the peripheral ones. The scatter plots of principal coordinates analysis indicated that there are three well-supported varieties in B. nivea. The NJ tree and the distribution of genetic diversity showed that ramie has been domesticated in the middle and lower regions of the Yangtze valley, and populations in Sichuan province have been introduced from this region, forming naturalized populations.</description><subject>Agriculture</subject><subject>Alleles</subject><subject>Biomedical and Life Sciences</subject><subject>Boehmeria nivea</subject><subject>Dispersal</subject><subject>Domestication</subject><subject>Gene pool</subject><subject>Genetic diversity</subject><subject>Genetic markers</subject><subject>genetic variation</subject><subject>Life Sciences</subject><subject>loci</subject><subject>microsatellite repeats</subject><subject>Microsatellites</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Plant Systematics/Taxonomy/Biogeography</subject><subject>Population genetics</subject><subject>Population structure</subject><subject>Populations</subject><subject>Primers</subject><subject>ramie</subject><subject>Research Article</subject><subject>Rivers</subject><subject>wild relatives</subject><issn>0925-9864</issn><issn>1573-5109</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU1rFTEUhoMoeK3-AFcG3FwXc83nZGapxbbCBcFr1-E0OWlTZybXZKZw9_5wU0YQunAVOHme88FLyFvOdpwx87FwZoRoGJcNY1w17BnZcG1koznrn5MN64Vu-q5VL8mrUu4ZY71puw357dOIZY4O5pgmCpOnPpYj5gIDTYHOd0jdMszxAWb0NMMYkW4_J7wbMUegU3xAoNv97gO9hMXvaJzoRcaTqwWPM-YxTtW7OdFpcQNCpofDdzpC_om5ToPhVGJ5TV4EGAq--fuekeuLLz_Or5r9t8uv55_2jZNGzg33IWBQbSfR-N5wpaFTXKJ2RmHXcRdCJ1DfIASletdJ5ZSUPrgKI2gtz8h27XvM6ddSz7ZjLA6HASZMS7Fct4wLJjtT0fdP0Pu05LpvsULo3mgle1kpvlIup1IyBnvMsR53spzZx1zsmoutudjHXCyrjlidUtnpFvO_zv-T3q1SgGThNsdirw-i_tUgW61bJf8AwDaZCA</recordid><startdate>2014</startdate><enddate>2014</enddate><creator>Liao, Liang</creator><creator>Li, Tongjian</creator><creator>Zhang, Jin</creator><creator>Xu, Lingling</creator><creator>Deng, Huisheng</creator><creator>Han, Xingjie</creator><general>Springer-Verlag</general><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>2014</creationdate><title>domestication and dispersal of the cultivated ramie (Boehmeria nivea (L.) Gaud. in Freyc.) determined by nuclear SSR marker analysis</title><author>Liao, Liang ; Li, Tongjian ; Zhang, Jin ; Xu, Lingling ; Deng, Huisheng ; Han, Xingjie</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c373t-1dffef4683e7d97145a8413e5c74e881cff82e5beaf449c834c433dfcd97ea553</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Agriculture</topic><topic>Alleles</topic><topic>Biomedical and Life Sciences</topic><topic>Boehmeria nivea</topic><topic>Dispersal</topic><topic>Domestication</topic><topic>Gene pool</topic><topic>Genetic diversity</topic><topic>Genetic markers</topic><topic>genetic variation</topic><topic>Life Sciences</topic><topic>loci</topic><topic>microsatellite repeats</topic><topic>Microsatellites</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Plant Systematics/Taxonomy/Biogeography</topic><topic>Population genetics</topic><topic>Population structure</topic><topic>Populations</topic><topic>Primers</topic><topic>ramie</topic><topic>Research Article</topic><topic>Rivers</topic><topic>wild relatives</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liao, Liang</creatorcontrib><creatorcontrib>Li, Tongjian</creatorcontrib><creatorcontrib>Zhang, Jin</creatorcontrib><creatorcontrib>Xu, Lingling</creatorcontrib><creatorcontrib>Deng, Huisheng</creatorcontrib><creatorcontrib>Han, Xingjie</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Genetic resources and crop evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liao, Liang</au><au>Li, Tongjian</au><au>Zhang, Jin</au><au>Xu, Lingling</au><au>Deng, Huisheng</au><au>Han, Xingjie</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>domestication and dispersal of the cultivated ramie (Boehmeria nivea (L.) Gaud. in Freyc.) determined by nuclear SSR marker analysis</atitle><jtitle>Genetic resources and crop evolution</jtitle><stitle>Genet Resour Crop Evol</stitle><date>2014</date><risdate>2014</risdate><volume>61</volume><issue>1</issue><spage>55</spage><epage>67</epage><pages>55-67</pages><issn>0925-9864</issn><eissn>1573-5109</eissn><abstract>Ramie (Boehmeria nivea) was domesticated in China. However, the geographic region of domestication is not exactly known. Genetic diversity and population structure of ramie and their wild relatives were assessed using microsatellite markers. The 8 microsatellite primers revealed 96 alleles in 50 ramie populations, with an average of 10.25 alleles per locus. Cultivated ramie gene pool harbors approximately 82.9 % of the SSR diversity presented in wild B. nivea var. nivea. It is suggested that ramie has experienced a relatively moderate domestication bottleneck. The distribution of genetic diversity shows that genetic diversity is relatively high in populations along the Yangtze River compared to the peripheral ones. The scatter plots of principal coordinates analysis indicated that there are three well-supported varieties in B. nivea. The NJ tree and the distribution of genetic diversity showed that ramie has been domesticated in the middle and lower regions of the Yangtze valley, and populations in Sichuan province have been introduced from this region, forming naturalized populations.</abstract><cop>Dordrecht</cop><pub>Springer-Verlag</pub><doi>10.1007/s10722-013-0014-0</doi><tpages>13</tpages></addata></record> |
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| subjects | Agriculture Alleles Biomedical and Life Sciences Boehmeria nivea Dispersal Domestication Gene pool Genetic diversity Genetic markers genetic variation Life Sciences loci microsatellite repeats Microsatellites Plant Genetics and Genomics Plant Physiology Plant Sciences Plant Systematics/Taxonomy/Biogeography Population genetics Population structure Populations Primers ramie Research Article Rivers wild relatives |
| title | domestication and dispersal of the cultivated ramie (Boehmeria nivea (L.) Gaud. in Freyc.) determined by nuclear SSR marker analysis |
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