Rice epigenomics and epigenetics: challenges and opportunities
•Features of rice genome-wide DNA methylation and histone modification landscape.•Rice epigenetic regulators display specific developmental and stress–responsive functions.•Importance of epigenetic variation as a resource for trait variations and epiallele discovery in rice. During recent years rice...
Gespeichert in:
| Veröffentlicht in: | Current opinion in plant biology 2013-05, Vol.16 (2), p.164-169 |
|---|---|
| Hauptverfasser: | , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 169 |
|---|---|
| container_issue | 2 |
| container_start_page | 164 |
| container_title | Current opinion in plant biology |
| container_volume | 16 |
| creator | Chen, Xiangsong Zhou, Dao-Xiu |
| description | •Features of rice genome-wide DNA methylation and histone modification landscape.•Rice epigenetic regulators display specific developmental and stress–responsive functions.•Importance of epigenetic variation as a resource for trait variations and epiallele discovery in rice.
During recent years rice genome-wide epigenomic information such as DNA methylation and histone modifications, which are important for genome activity has been accumulated. The function of a number of rice epigenetic regulators has been studied, many of which are found to be involved in a diverse range of developmental and stress–responsive pathways. Analysis of epigenetic variations among different rice varieties indicates that epigenetic modification may lead to inheritable phenotypic variation. Characterizing phenotypic consequences of rice epigenomic variations and the underlining chromatin mechanism and identifying epialleles related to important agronomic traits may provide novel strategies to enhance agronomically favorable traits and grain productivity in rice. |
| doi_str_mv | 10.1016/j.pbi.2013.03.004 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1560113144</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S1369526613000393</els_id><sourcerecordid>1365508570</sourcerecordid><originalsourceid>FETCH-LOGICAL-c509t-5709dfa4d0708bb5fd2f9060d12110969766571b40058cbca8ae3222a937c1063</originalsourceid><addsrcrecordid>eNqFkVtLxDAQhYMo3n-AL7qPvnSdSZq0VRBEvIEgeHkOaTpds3TbmnQF_71ZuvqoMJAM8-XkMIexI4QpAqqz-bQv3ZQDiinEgnSD7WKeFQkIqTbjXagikVypHbYXwhwAJM_ENtvhcc6lkrvs8tlZmlDvZtR2C2fDxLTVuqch9ucT-26ahtoZjbOu7zs_LFs3OAoHbKs2TaDD9bnP3m5vXq_vk8enu4frq8fESiiGRGZQVLVJK8ggL0tZV7wuQEGFHBEKVWRKyQzLNDrMbWlNbkhwzk0hMougxD47HXV7330sKQx64YKlpjEtdcugUSpAFJim_6OpgFyCQv4_KpSUEc4gojii1ncheKp1793C-C-NoFdh6LmOYehVGBpiwcrJ8Vp-WS6o-n3xs_0InIxAbTptZt4F_fYSFdJVUmn8NxIXI0FxuZ-OvA7WUWupcp7soKvO_WHgG7e5oG8</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1365508570</pqid></control><display><type>article</type><title>Rice epigenomics and epigenetics: challenges and opportunities</title><source>MEDLINE</source><source>Elsevier ScienceDirect Journals</source><creator>Chen, Xiangsong ; Zhou, Dao-Xiu</creator><creatorcontrib>Chen, Xiangsong ; Zhou, Dao-Xiu</creatorcontrib><description>•Features of rice genome-wide DNA methylation and histone modification landscape.•Rice epigenetic regulators display specific developmental and stress–responsive functions.•Importance of epigenetic variation as a resource for trait variations and epiallele discovery in rice.
During recent years rice genome-wide epigenomic information such as DNA methylation and histone modifications, which are important for genome activity has been accumulated. The function of a number of rice epigenetic regulators has been studied, many of which are found to be involved in a diverse range of developmental and stress–responsive pathways. Analysis of epigenetic variations among different rice varieties indicates that epigenetic modification may lead to inheritable phenotypic variation. Characterizing phenotypic consequences of rice epigenomic variations and the underlining chromatin mechanism and identifying epialleles related to important agronomic traits may provide novel strategies to enhance agronomically favorable traits and grain productivity in rice.</description><identifier>ISSN: 1369-5266</identifier><identifier>EISSN: 1879-0356</identifier><identifier>DOI: 10.1016/j.pbi.2013.03.004</identifier><identifier>PMID: 23562565</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>agronomic traits ; Alleles ; chromatin ; Chromatin - metabolism ; DNA methylation ; Epigenesis, Genetic ; epigenetics ; Epigenomics ; genome ; histones ; Hybrid Vigor - genetics ; Oryza - genetics ; Oryza sativa ; phenotypic variation ; rice</subject><ispartof>Current opinion in plant biology, 2013-05, Vol.16 (2), p.164-169</ispartof><rights>2013 Elsevier Ltd</rights><rights>Copyright © 2013 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c509t-5709dfa4d0708bb5fd2f9060d12110969766571b40058cbca8ae3222a937c1063</citedby><cites>FETCH-LOGICAL-c509t-5709dfa4d0708bb5fd2f9060d12110969766571b40058cbca8ae3222a937c1063</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1369526613000393$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23562565$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chen, Xiangsong</creatorcontrib><creatorcontrib>Zhou, Dao-Xiu</creatorcontrib><title>Rice epigenomics and epigenetics: challenges and opportunities</title><title>Current opinion in plant biology</title><addtitle>Curr Opin Plant Biol</addtitle><description>•Features of rice genome-wide DNA methylation and histone modification landscape.•Rice epigenetic regulators display specific developmental and stress–responsive functions.•Importance of epigenetic variation as a resource for trait variations and epiallele discovery in rice.
During recent years rice genome-wide epigenomic information such as DNA methylation and histone modifications, which are important for genome activity has been accumulated. The function of a number of rice epigenetic regulators has been studied, many of which are found to be involved in a diverse range of developmental and stress–responsive pathways. Analysis of epigenetic variations among different rice varieties indicates that epigenetic modification may lead to inheritable phenotypic variation. Characterizing phenotypic consequences of rice epigenomic variations and the underlining chromatin mechanism and identifying epialleles related to important agronomic traits may provide novel strategies to enhance agronomically favorable traits and grain productivity in rice.</description><subject>agronomic traits</subject><subject>Alleles</subject><subject>chromatin</subject><subject>Chromatin - metabolism</subject><subject>DNA methylation</subject><subject>Epigenesis, Genetic</subject><subject>epigenetics</subject><subject>Epigenomics</subject><subject>genome</subject><subject>histones</subject><subject>Hybrid Vigor - genetics</subject><subject>Oryza - genetics</subject><subject>Oryza sativa</subject><subject>phenotypic variation</subject><subject>rice</subject><issn>1369-5266</issn><issn>1879-0356</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkVtLxDAQhYMo3n-AL7qPvnSdSZq0VRBEvIEgeHkOaTpds3TbmnQF_71ZuvqoMJAM8-XkMIexI4QpAqqz-bQv3ZQDiinEgnSD7WKeFQkIqTbjXagikVypHbYXwhwAJM_ENtvhcc6lkrvs8tlZmlDvZtR2C2fDxLTVuqch9ucT-26ahtoZjbOu7zs_LFs3OAoHbKs2TaDD9bnP3m5vXq_vk8enu4frq8fESiiGRGZQVLVJK8ggL0tZV7wuQEGFHBEKVWRKyQzLNDrMbWlNbkhwzk0hMougxD47HXV7330sKQx64YKlpjEtdcugUSpAFJim_6OpgFyCQv4_KpSUEc4gojii1ncheKp1793C-C-NoFdh6LmOYehVGBpiwcrJ8Vp-WS6o-n3xs_0InIxAbTptZt4F_fYSFdJVUmn8NxIXI0FxuZ-OvA7WUWupcp7soKvO_WHgG7e5oG8</recordid><startdate>20130501</startdate><enddate>20130501</enddate><creator>Chen, Xiangsong</creator><creator>Zhou, Dao-Xiu</creator><general>Elsevier Ltd</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7TM</scope></search><sort><creationdate>20130501</creationdate><title>Rice epigenomics and epigenetics: challenges and opportunities</title><author>Chen, Xiangsong ; Zhou, Dao-Xiu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c509t-5709dfa4d0708bb5fd2f9060d12110969766571b40058cbca8ae3222a937c1063</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>agronomic traits</topic><topic>Alleles</topic><topic>chromatin</topic><topic>Chromatin - metabolism</topic><topic>DNA methylation</topic><topic>Epigenesis, Genetic</topic><topic>epigenetics</topic><topic>Epigenomics</topic><topic>genome</topic><topic>histones</topic><topic>Hybrid Vigor - genetics</topic><topic>Oryza - genetics</topic><topic>Oryza sativa</topic><topic>phenotypic variation</topic><topic>rice</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chen, Xiangsong</creatorcontrib><creatorcontrib>Zhou, Dao-Xiu</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Nucleic Acids Abstracts</collection><jtitle>Current opinion in plant biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chen, Xiangsong</au><au>Zhou, Dao-Xiu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Rice epigenomics and epigenetics: challenges and opportunities</atitle><jtitle>Current opinion in plant biology</jtitle><addtitle>Curr Opin Plant Biol</addtitle><date>2013-05-01</date><risdate>2013</risdate><volume>16</volume><issue>2</issue><spage>164</spage><epage>169</epage><pages>164-169</pages><issn>1369-5266</issn><eissn>1879-0356</eissn><abstract>•Features of rice genome-wide DNA methylation and histone modification landscape.•Rice epigenetic regulators display specific developmental and stress–responsive functions.•Importance of epigenetic variation as a resource for trait variations and epiallele discovery in rice.
During recent years rice genome-wide epigenomic information such as DNA methylation and histone modifications, which are important for genome activity has been accumulated. The function of a number of rice epigenetic regulators has been studied, many of which are found to be involved in a diverse range of developmental and stress–responsive pathways. Analysis of epigenetic variations among different rice varieties indicates that epigenetic modification may lead to inheritable phenotypic variation. Characterizing phenotypic consequences of rice epigenomic variations and the underlining chromatin mechanism and identifying epialleles related to important agronomic traits may provide novel strategies to enhance agronomically favorable traits and grain productivity in rice.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>23562565</pmid><doi>10.1016/j.pbi.2013.03.004</doi><tpages>6</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1369-5266 |
| ispartof | Current opinion in plant biology, 2013-05, Vol.16 (2), p.164-169 |
| issn | 1369-5266 1879-0356 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1560113144 |
| source | MEDLINE; Elsevier ScienceDirect Journals |
| subjects | agronomic traits Alleles chromatin Chromatin - metabolism DNA methylation Epigenesis, Genetic epigenetics Epigenomics genome histones Hybrid Vigor - genetics Oryza - genetics Oryza sativa phenotypic variation rice |
| title | Rice epigenomics and epigenetics: challenges and opportunities |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-10T07%3A42%3A30IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Rice%20epigenomics%20and%20epigenetics:%20challenges%20and%20opportunities&rft.jtitle=Current%20opinion%20in%20plant%20biology&rft.au=Chen,%20Xiangsong&rft.date=2013-05-01&rft.volume=16&rft.issue=2&rft.spage=164&rft.epage=169&rft.pages=164-169&rft.issn=1369-5266&rft.eissn=1879-0356&rft_id=info:doi/10.1016/j.pbi.2013.03.004&rft_dat=%3Cproquest_cross%3E1365508570%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1365508570&rft_id=info:pmid/23562565&rft_els_id=S1369526613000393&rfr_iscdi=true |