Oxidative stress response in Pseudomonas putida
Pseudomonas putida is widely distributed in nature and is capable of degrading various organic compounds due to its high metabolic versatility. The survival capacity of P. putida stems from its frequent exposure to various endogenous and exogenous oxidative stresses. Oxidative stress is an unavoidab...
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| description | Pseudomonas putida is widely distributed in nature and is capable of degrading various organic compounds due to its high metabolic versatility. The survival capacity of P. putida stems from its frequent exposure to various endogenous and exogenous oxidative stresses. Oxidative stress is an unavoidable consequence of interactions with various reactive oxygen species (ROS)-inducing agents existing in various niches. ROS could facilitate the evolution of bacteria by mutating genomes. Aerobic bacteria maintain defense mechanisms against oxidative stress throughout their evolution. To overcome the detrimental effects of oxidative stress, P. putida has developed defensive cellular systems involving induction of stress-sensing proteins and detoxification enzymes as well as regulation of oxidative stress response networks. Genetic responses to oxidative stress in P. putida differ markedly from those observed in Escherichia coli and Salmonella spp. Two major redox-sensing transcriptional regulators, SoxR and OxyR, are present and functional in the genome of P. putida. However, the novel regulators FinR and HexR control many genes belonging to the E. coli SoxR regulon. Oxidative stress can be generated by exposure to antibiotics, and iron homeostasis in P. putida is crucial for bacterial cell survival during treatment with antibiotics. This review highlights and summarizes current knowledge of oxidative stress in P. putida, as a model soil bacterium, together with recent studies from molecular genetics perspectives. |
| doi_str_mv | 10.1007/s00253-014-5883-4 |
| format | Article |
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The survival capacity of P. putida stems from its frequent exposure to various endogenous and exogenous oxidative stresses. Oxidative stress is an unavoidable consequence of interactions with various reactive oxygen species (ROS)-inducing agents existing in various niches. ROS could facilitate the evolution of bacteria by mutating genomes. Aerobic bacteria maintain defense mechanisms against oxidative stress throughout their evolution. To overcome the detrimental effects of oxidative stress, P. putida has developed defensive cellular systems involving induction of stress-sensing proteins and detoxification enzymes as well as regulation of oxidative stress response networks. Genetic responses to oxidative stress in P. putida differ markedly from those observed in Escherichia coli and Salmonella spp. Two major redox-sensing transcriptional regulators, SoxR and OxyR, are present and functional in the genome of P. putida. However, the novel regulators FinR and HexR control many genes belonging to the E. coli SoxR regulon. Oxidative stress can be generated by exposure to antibiotics, and iron homeostasis in P. putida is crucial for bacterial cell survival during treatment with antibiotics. This review highlights and summarizes current knowledge of oxidative stress in P. putida, as a model soil bacterium, together with recent studies from molecular genetics perspectives.</description><identifier>ISSN: 0175-7598</identifier><identifier>EISSN: 1432-0614</identifier><identifier>DOI: 10.1007/s00253-014-5883-4</identifier><identifier>PMID: 24957251</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer-Verlag</publisher><subject>Aerobic bacteria ; Analysis ; Antibiotics ; Bacteria ; Biomedical and Life Sciences ; Bioremediation ; Biotechnology ; cell viability ; defense mechanisms ; Detoxification ; E coli ; Enzymes ; Escherichia coli ; evolution ; Gene Expression Regulation, Bacterial ; Gene Regulatory Networks ; Genetics ; Genomes ; Homeostasis ; Hydrogen peroxide ; Life Sciences ; Metabolism ; Microbial Genetics and Genomics ; Microbiology ; Mini-Review ; niches ; Organic compounds ; Oxidants - toxicity ; Oxidation ; Oxidative Stress ; Physiological aspects ; Physiology ; Pollutants ; Proteins ; Pseudomonas putida ; Pseudomonas putida - drug effects ; Pseudomonas putida - physiology ; reactive oxygen species ; regulon ; Salmonella ; soil bacteria ; stress response ; Stress, Physiological ; Studies ; transcription (genetics)</subject><ispartof>Applied microbiology and biotechnology, 2014-08, Vol.98 (16), p.6933-6946</ispartof><rights>Springer-Verlag Berlin Heidelberg 2014</rights><rights>COPYRIGHT 2014 Springer</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c637t-144d5f6f2050fe41bf6ac1d7d77dc6b1962eca95f7739129079ec937ce9c44363</citedby><cites>FETCH-LOGICAL-c637t-144d5f6f2050fe41bf6ac1d7d77dc6b1962eca95f7739129079ec937ce9c44363</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00253-014-5883-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00253-014-5883-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41467,42536,51298</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24957251$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kim, Jisun</creatorcontrib><creatorcontrib>Park, Woojun</creatorcontrib><title>Oxidative stress response in Pseudomonas putida</title><title>Applied microbiology and biotechnology</title><addtitle>Appl Microbiol Biotechnol</addtitle><addtitle>Appl Microbiol Biotechnol</addtitle><description>Pseudomonas putida is widely distributed in nature and is capable of degrading various organic compounds due to its high metabolic versatility. The survival capacity of P. putida stems from its frequent exposure to various endogenous and exogenous oxidative stresses. Oxidative stress is an unavoidable consequence of interactions with various reactive oxygen species (ROS)-inducing agents existing in various niches. ROS could facilitate the evolution of bacteria by mutating genomes. Aerobic bacteria maintain defense mechanisms against oxidative stress throughout their evolution. To overcome the detrimental effects of oxidative stress, P. putida has developed defensive cellular systems involving induction of stress-sensing proteins and detoxification enzymes as well as regulation of oxidative stress response networks. Genetic responses to oxidative stress in P. putida differ markedly from those observed in Escherichia coli and Salmonella spp. Two major redox-sensing transcriptional regulators, SoxR and OxyR, are present and functional in the genome of P. putida. However, the novel regulators FinR and HexR control many genes belonging to the E. coli SoxR regulon. Oxidative stress can be generated by exposure to antibiotics, and iron homeostasis in P. putida is crucial for bacterial cell survival during treatment with antibiotics. This review highlights and summarizes current knowledge of oxidative stress in P. putida, as a model soil bacterium, together with recent studies from molecular genetics perspectives.</description><subject>Aerobic bacteria</subject><subject>Analysis</subject><subject>Antibiotics</subject><subject>Bacteria</subject><subject>Biomedical and Life Sciences</subject><subject>Bioremediation</subject><subject>Biotechnology</subject><subject>cell viability</subject><subject>defense mechanisms</subject><subject>Detoxification</subject><subject>E coli</subject><subject>Enzymes</subject><subject>Escherichia coli</subject><subject>evolution</subject><subject>Gene Expression Regulation, Bacterial</subject><subject>Gene Regulatory Networks</subject><subject>Genetics</subject><subject>Genomes</subject><subject>Homeostasis</subject><subject>Hydrogen peroxide</subject><subject>Life Sciences</subject><subject>Metabolism</subject><subject>Microbial Genetics and Genomics</subject><subject>Microbiology</subject><subject>Mini-Review</subject><subject>niches</subject><subject>Organic compounds</subject><subject>Oxidants - toxicity</subject><subject>Oxidation</subject><subject>Oxidative Stress</subject><subject>Physiological aspects</subject><subject>Physiology</subject><subject>Pollutants</subject><subject>Proteins</subject><subject>Pseudomonas putida</subject><subject>Pseudomonas putida - drug effects</subject><subject>Pseudomonas putida - physiology</subject><subject>reactive oxygen species</subject><subject>regulon</subject><subject>Salmonella</subject><subject>soil bacteria</subject><subject>stress response</subject><subject>Stress, Physiological</subject><subject>Studies</subject><subject>transcription (genetics)</subject><issn>0175-7598</issn><issn>1432-0614</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqN0l1r1EAUBuBBFLtWf4A3GvBGL9Ke-c5cluJHoVCx9nqYncwsUzaZdU4i9d87S-rHiogEEpg874GTN4Q8p3BCAfQpAjDJW6CilV3HW_GArKjgrAVFxUOyAqplq6XpjsgTxFsAyjqlHpMjJozUTNIVOb26S72b0tfQ4FQCYlNvuzxiaNLYfMQw93nIo8NmN09VPiWPottieHb_PCY3795-Pv_QXl69vzg_u2y94npqqRC9jCoykBCDoOuonKe97rXuvVpTo1jwzsioNTeUGdAmeMO1D8YLwRU_Jq-XubuSv8wBJzsk9GG7dWPIM1oqFVCQ2vwPlZSz-hlopa_-oLd5LmNdZK9ACWak-aU2bhtsGmOeivP7ofaMd5UZzaGqk7-oevVhSD6PIaZ6fhB4cxCoZgp308bNiPbi-tOhpYv1JSOWEO2upMGVb5aC3Xdvl-5t7d7uu7eiZl7cLzevh9D_TPwouwK2AKyvxk0ov23_j6kvl1B02bpNSWhvrlkF9W9SWgDj3wGAvb1q</recordid><startdate>20140801</startdate><enddate>20140801</enddate><creator>Kim, Jisun</creator><creator>Park, Woojun</creator><general>Springer-Verlag</general><general>Springer Berlin Heidelberg</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7WY</scope><scope>7WZ</scope><scope>7X7</scope><scope>7XB</scope><scope>87Z</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8FL</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BEZIV</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FRNLG</scope><scope>FYUFA</scope><scope>F~G</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K60</scope><scope>K6~</scope><scope>K9.</scope><scope>L.-</scope><scope>LK8</scope><scope>M0C</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQBIZ</scope><scope>PQBZA</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>7QO</scope></search><sort><creationdate>20140801</creationdate><title>Oxidative stress response in Pseudomonas putida</title><author>Kim, Jisun ; Park, Woojun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c637t-144d5f6f2050fe41bf6ac1d7d77dc6b1962eca95f7739129079ec937ce9c44363</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Aerobic bacteria</topic><topic>Analysis</topic><topic>Antibiotics</topic><topic>Bacteria</topic><topic>Biomedical and Life Sciences</topic><topic>Bioremediation</topic><topic>Biotechnology</topic><topic>cell viability</topic><topic>defense mechanisms</topic><topic>Detoxification</topic><topic>E coli</topic><topic>Enzymes</topic><topic>Escherichia coli</topic><topic>evolution</topic><topic>Gene Expression Regulation, Bacterial</topic><topic>Gene Regulatory Networks</topic><topic>Genetics</topic><topic>Genomes</topic><topic>Homeostasis</topic><topic>Hydrogen peroxide</topic><topic>Life Sciences</topic><topic>Metabolism</topic><topic>Microbial Genetics and Genomics</topic><topic>Microbiology</topic><topic>Mini-Review</topic><topic>niches</topic><topic>Organic compounds</topic><topic>Oxidants - toxicity</topic><topic>Oxidation</topic><topic>Oxidative Stress</topic><topic>Physiological aspects</topic><topic>Physiology</topic><topic>Pollutants</topic><topic>Proteins</topic><topic>Pseudomonas putida</topic><topic>Pseudomonas putida - drug effects</topic><topic>Pseudomonas putida - physiology</topic><topic>reactive oxygen species</topic><topic>regulon</topic><topic>Salmonella</topic><topic>soil bacteria</topic><topic>stress response</topic><topic>Stress, Physiological</topic><topic>Studies</topic><topic>transcription (genetics)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kim, Jisun</creatorcontrib><creatorcontrib>Park, Woojun</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>ABI/INFORM Collection</collection><collection>ABI/INFORM Global (PDF only)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>ABI/INFORM Global (Alumni Edition)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ABI/INFORM Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Business Premium Collection</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Business Premium Collection (Alumni)</collection><collection>Health Research Premium Collection</collection><collection>ABI/INFORM Global (Corporate)</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Business Collection (Alumni Edition)</collection><collection>ProQuest Business Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ABI/INFORM Professional Advanced</collection><collection>ProQuest Biological Science Collection</collection><collection>ABI/INFORM Global</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Business</collection><collection>ProQuest One Business (Alumni)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>Biotechnology Research Abstracts</collection><jtitle>Applied microbiology and biotechnology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kim, Jisun</au><au>Park, Woojun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Oxidative stress response in Pseudomonas putida</atitle><jtitle>Applied microbiology and biotechnology</jtitle><stitle>Appl Microbiol Biotechnol</stitle><addtitle>Appl Microbiol Biotechnol</addtitle><date>2014-08-01</date><risdate>2014</risdate><volume>98</volume><issue>16</issue><spage>6933</spage><epage>6946</epage><pages>6933-6946</pages><issn>0175-7598</issn><eissn>1432-0614</eissn><abstract>Pseudomonas putida is widely distributed in nature and is capable of degrading various organic compounds due to its high metabolic versatility. The survival capacity of P. putida stems from its frequent exposure to various endogenous and exogenous oxidative stresses. Oxidative stress is an unavoidable consequence of interactions with various reactive oxygen species (ROS)-inducing agents existing in various niches. ROS could facilitate the evolution of bacteria by mutating genomes. Aerobic bacteria maintain defense mechanisms against oxidative stress throughout their evolution. To overcome the detrimental effects of oxidative stress, P. putida has developed defensive cellular systems involving induction of stress-sensing proteins and detoxification enzymes as well as regulation of oxidative stress response networks. Genetic responses to oxidative stress in P. putida differ markedly from those observed in Escherichia coli and Salmonella spp. Two major redox-sensing transcriptional regulators, SoxR and OxyR, are present and functional in the genome of P. putida. However, the novel regulators FinR and HexR control many genes belonging to the E. coli SoxR regulon. Oxidative stress can be generated by exposure to antibiotics, and iron homeostasis in P. putida is crucial for bacterial cell survival during treatment with antibiotics. This review highlights and summarizes current knowledge of oxidative stress in P. putida, as a model soil bacterium, together with recent studies from molecular genetics perspectives.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer-Verlag</pub><pmid>24957251</pmid><doi>10.1007/s00253-014-5883-4</doi><tpages>14</tpages></addata></record> |
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| ispartof | Applied microbiology and biotechnology, 2014-08, Vol.98 (16), p.6933-6946 |
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| subjects | Aerobic bacteria Analysis Antibiotics Bacteria Biomedical and Life Sciences Bioremediation Biotechnology cell viability defense mechanisms Detoxification E coli Enzymes Escherichia coli evolution Gene Expression Regulation, Bacterial Gene Regulatory Networks Genetics Genomes Homeostasis Hydrogen peroxide Life Sciences Metabolism Microbial Genetics and Genomics Microbiology Mini-Review niches Organic compounds Oxidants - toxicity Oxidation Oxidative Stress Physiological aspects Physiology Pollutants Proteins Pseudomonas putida Pseudomonas putida - drug effects Pseudomonas putida - physiology reactive oxygen species regulon Salmonella soil bacteria stress response Stress, Physiological Studies transcription (genetics) |
| title | Oxidative stress response in Pseudomonas putida |
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