Molecular cloning of type I collagen cDNA and nutritional regulation of type I collagen mRNA expression in grass carp

Grass carp (Ctenopharyngodon idellus) are important Chinese freshwater fish, and in China, the faba bean has been used as the sole food source for grass carp to transform them into crisp grass carp. Because of this, crisp grass carp has become an economically important fish because of its increased...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Journal of animal physiology and animal nutrition 2014-08, Vol.98 (4), p.755-765
Hauptverfasser: Yu, E. M, Liu, B. H, Wang, G. J, Yu, D. G, Xie, J, Xia, Y, Gong, W. B, Wang, H. H, Li, Z. F, Wei, N
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 765
container_issue 4
container_start_page 755
container_title Journal of animal physiology and animal nutrition
container_volume 98
creator Yu, E. M
Liu, B. H
Wang, G. J
Yu, D. G
Xie, J
Xia, Y
Gong, W. B
Wang, H. H
Li, Z. F
Wei, N
description Grass carp (Ctenopharyngodon idellus) are important Chinese freshwater fish, and in China, the faba bean has been used as the sole food source for grass carp to transform them into crisp grass carp. Because of this, crisp grass carp has become an economically important fish because of its increased muscle hardness. To study the nutritional regulation of type I collagen in faba bean‐fed grass carp, we isolated type I collagen alpha 2 (COL1A2) on the basis of our isolation of COL1A1. The COL1A2 cDNA was found to be 4899 bp in length and included a 4059‐bp coding sequence (CDS) and encoded a polypeptide of 1352 AA. The protein peptide molecular weight was 127.39 kD, and the theoretical isoelectric point was 9.37. The COL1A2 protein possessed five α‐helixes, eight β‐sheets, 16 regions of triple helical repeats, 21 low‐complexity regions, 10 function domains and two zinc‐binding sites; however, no calcium‐binding sites were observed. The mRNA expression of COL1A1 and COL1A2 was assessed in eight tissues (muscle, hepatopancreas, intestine, gills, skin, fin, kidney and spleen) from grass carp and crisp grass carp by semi‐quantitative RT‐PCR. Expression of COL1A1 in the muscle, intestines and skin of crisp grass carp was higher than that in grass carp, and expression of COL1A2 in the muscle, gills, fin and skin of crisp grass carp was higher than that in grass carp. In the muscle of crisp grass carp, expression of COL1A1 and COL1A2 was higher than that in grass carp, which was further confirmed by real‐time PCR, and collagen content also was enhanced. These results demonstrated that type I collagen was closely related to the increased muscle hardness of faba bean‐fed grass carp.
doi_str_mv 10.1111/jpn.12132
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1558523660</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3364357821</sourcerecordid><originalsourceid>FETCH-LOGICAL-c4482-21fb8fb3ea508d1d63b61add70b18fca5266d40011c76f30b1d0f15933da4c683</originalsourceid><addsrcrecordid>eNp1kU1v1DAQhi0EokvhwB8AS73AIa3Hjp3kWBVoi8ryWXG0HH9EWbJ2sBPR_fd4SdsDAl9GHj3vq5l5EXoO5BjyO9mM_hgoMPoAraBkTUFYIx6iFWkYFDQ3DtCTlDaEQMWJeIwOaAm0qihfoflDGKyeBxWxHoLvfYeDw9NutPgS6zAMqrMe6zfrU6y8wX6eYj_1wasBR9tl3f7zL8n2S5bYmzHalPZI73EXVUpYqzg-RY-cGpJ9dlsP0fW7t9_OLoqrj-eXZ6dXhS7LmhYUXFu7llnFSW3ACNYKUMZUpIXaacWpEKbMa4GuhGO5a4gD3jBmVKlFzQ7Rq8V3jOHnbNMkt33SNo_obZiTBM5rTpkQJKNHf6GbMMe8554qGa0bYCxTrxdKx5BStE6Osd-quJNA5D4LmbOQf7LI7Itbx7ndWnNP3h0_AycL8Ksf7O7_TvL9p_WdZbEo-jTZm3uFij-kqFjF5ff1ubyg0HxmNcgy8y8X3qkgVRf7JK-_UgKcEEIrwjj7DSHcqhM</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1543289133</pqid></control><display><type>article</type><title>Molecular cloning of type I collagen cDNA and nutritional regulation of type I collagen mRNA expression in grass carp</title><source>MEDLINE</source><source>Wiley Online Library All Journals</source><creator>Yu, E. M ; Liu, B. H ; Wang, G. J ; Yu, D. G ; Xie, J ; Xia, Y ; Gong, W. B ; Wang, H. H ; Li, Z. F ; Wei, N</creator><creatorcontrib>Yu, E. M ; Liu, B. H ; Wang, G. J ; Yu, D. G ; Xie, J ; Xia, Y ; Gong, W. B ; Wang, H. H ; Li, Z. F ; Wei, N</creatorcontrib><description>Grass carp (Ctenopharyngodon idellus) are important Chinese freshwater fish, and in China, the faba bean has been used as the sole food source for grass carp to transform them into crisp grass carp. Because of this, crisp grass carp has become an economically important fish because of its increased muscle hardness. To study the nutritional regulation of type I collagen in faba bean‐fed grass carp, we isolated type I collagen alpha 2 (COL1A2) on the basis of our isolation of COL1A1. The COL1A2 cDNA was found to be 4899 bp in length and included a 4059‐bp coding sequence (CDS) and encoded a polypeptide of 1352 AA. The protein peptide molecular weight was 127.39 kD, and the theoretical isoelectric point was 9.37. The COL1A2 protein possessed five α‐helixes, eight β‐sheets, 16 regions of triple helical repeats, 21 low‐complexity regions, 10 function domains and two zinc‐binding sites; however, no calcium‐binding sites were observed. The mRNA expression of COL1A1 and COL1A2 was assessed in eight tissues (muscle, hepatopancreas, intestine, gills, skin, fin, kidney and spleen) from grass carp and crisp grass carp by semi‐quantitative RT‐PCR. Expression of COL1A1 in the muscle, intestines and skin of crisp grass carp was higher than that in grass carp, and expression of COL1A2 in the muscle, gills, fin and skin of crisp grass carp was higher than that in grass carp. In the muscle of crisp grass carp, expression of COL1A1 and COL1A2 was higher than that in grass carp, which was further confirmed by real‐time PCR, and collagen content also was enhanced. These results demonstrated that type I collagen was closely related to the increased muscle hardness of faba bean‐fed grass carp.</description><identifier>ISSN: 0931-2439</identifier><identifier>EISSN: 1439-0396</identifier><identifier>DOI: 10.1111/jpn.12132</identifier><identifier>PMID: 24127725</identifier><language>eng</language><publisher>Germany: Blackwell Science</publisher><subject>Amino Acid Sequence ; Animal Feed ; Animal Nutritional Physiological Phenomena ; Animals ; Carps - genetics ; Carps - metabolism ; Cloning, Molecular ; collagen ; Collagen Type I - genetics ; Collagen Type I - metabolism ; complementary DNA ; Computational Biology ; crisp grass carp ; Ctenopharyngodon idella ; Diet - veterinary ; DNA, Complementary - genetics ; DNA, Complementary - metabolism ; faba bean ; faba beans ; Fabaceae ; freshwater fish ; gene expression ; Gene Expression Regulation - physiology ; gills ; hardness ; hepatopancreas ; intestines ; isoelectric point ; kidneys ; messenger RNA ; molecular cloning ; Molecular Sequence Data ; molecular weight ; muscle hardness ; muscles ; Phylogeny ; polypeptides ; reverse transcriptase polymerase chain reaction ; RNA, Messenger - genetics ; RNA, Messenger - metabolism ; spleen</subject><ispartof>Journal of animal physiology and animal nutrition, 2014-08, Vol.98 (4), p.755-765</ispartof><rights>Journal of Animal Physiology and Animal Nutrition © 2013 Blackwell Verlag GmbH</rights><rights>Journal of Animal Physiology and Animal Nutrition © 2013 Blackwell Verlag GmbH.</rights><rights>2014 Blackwell Verlag GmbH</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4482-21fb8fb3ea508d1d63b61add70b18fca5266d40011c76f30b1d0f15933da4c683</citedby><cites>FETCH-LOGICAL-c4482-21fb8fb3ea508d1d63b61add70b18fca5266d40011c76f30b1d0f15933da4c683</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fjpn.12132$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fjpn.12132$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24127725$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yu, E. M</creatorcontrib><creatorcontrib>Liu, B. H</creatorcontrib><creatorcontrib>Wang, G. J</creatorcontrib><creatorcontrib>Yu, D. G</creatorcontrib><creatorcontrib>Xie, J</creatorcontrib><creatorcontrib>Xia, Y</creatorcontrib><creatorcontrib>Gong, W. B</creatorcontrib><creatorcontrib>Wang, H. H</creatorcontrib><creatorcontrib>Li, Z. F</creatorcontrib><creatorcontrib>Wei, N</creatorcontrib><title>Molecular cloning of type I collagen cDNA and nutritional regulation of type I collagen mRNA expression in grass carp</title><title>Journal of animal physiology and animal nutrition</title><addtitle>J Anim Physiol Anim Nutr</addtitle><description>Grass carp (Ctenopharyngodon idellus) are important Chinese freshwater fish, and in China, the faba bean has been used as the sole food source for grass carp to transform them into crisp grass carp. Because of this, crisp grass carp has become an economically important fish because of its increased muscle hardness. To study the nutritional regulation of type I collagen in faba bean‐fed grass carp, we isolated type I collagen alpha 2 (COL1A2) on the basis of our isolation of COL1A1. The COL1A2 cDNA was found to be 4899 bp in length and included a 4059‐bp coding sequence (CDS) and encoded a polypeptide of 1352 AA. The protein peptide molecular weight was 127.39 kD, and the theoretical isoelectric point was 9.37. The COL1A2 protein possessed five α‐helixes, eight β‐sheets, 16 regions of triple helical repeats, 21 low‐complexity regions, 10 function domains and two zinc‐binding sites; however, no calcium‐binding sites were observed. The mRNA expression of COL1A1 and COL1A2 was assessed in eight tissues (muscle, hepatopancreas, intestine, gills, skin, fin, kidney and spleen) from grass carp and crisp grass carp by semi‐quantitative RT‐PCR. Expression of COL1A1 in the muscle, intestines and skin of crisp grass carp was higher than that in grass carp, and expression of COL1A2 in the muscle, gills, fin and skin of crisp grass carp was higher than that in grass carp. In the muscle of crisp grass carp, expression of COL1A1 and COL1A2 was higher than that in grass carp, which was further confirmed by real‐time PCR, and collagen content also was enhanced. These results demonstrated that type I collagen was closely related to the increased muscle hardness of faba bean‐fed grass carp.</description><subject>Amino Acid Sequence</subject><subject>Animal Feed</subject><subject>Animal Nutritional Physiological Phenomena</subject><subject>Animals</subject><subject>Carps - genetics</subject><subject>Carps - metabolism</subject><subject>Cloning, Molecular</subject><subject>collagen</subject><subject>Collagen Type I - genetics</subject><subject>Collagen Type I - metabolism</subject><subject>complementary DNA</subject><subject>Computational Biology</subject><subject>crisp grass carp</subject><subject>Ctenopharyngodon idella</subject><subject>Diet - veterinary</subject><subject>DNA, Complementary - genetics</subject><subject>DNA, Complementary - metabolism</subject><subject>faba bean</subject><subject>faba beans</subject><subject>Fabaceae</subject><subject>freshwater fish</subject><subject>gene expression</subject><subject>Gene Expression Regulation - physiology</subject><subject>gills</subject><subject>hardness</subject><subject>hepatopancreas</subject><subject>intestines</subject><subject>isoelectric point</subject><subject>kidneys</subject><subject>messenger RNA</subject><subject>molecular cloning</subject><subject>Molecular Sequence Data</subject><subject>molecular weight</subject><subject>muscle hardness</subject><subject>muscles</subject><subject>Phylogeny</subject><subject>polypeptides</subject><subject>reverse transcriptase polymerase chain reaction</subject><subject>RNA, Messenger - genetics</subject><subject>RNA, Messenger - metabolism</subject><subject>spleen</subject><issn>0931-2439</issn><issn>1439-0396</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kU1v1DAQhi0EokvhwB8AS73AIa3Hjp3kWBVoi8ryWXG0HH9EWbJ2sBPR_fd4SdsDAl9GHj3vq5l5EXoO5BjyO9mM_hgoMPoAraBkTUFYIx6iFWkYFDQ3DtCTlDaEQMWJeIwOaAm0qihfoflDGKyeBxWxHoLvfYeDw9NutPgS6zAMqrMe6zfrU6y8wX6eYj_1wasBR9tl3f7zL8n2S5bYmzHalPZI73EXVUpYqzg-RY-cGpJ9dlsP0fW7t9_OLoqrj-eXZ6dXhS7LmhYUXFu7llnFSW3ACNYKUMZUpIXaacWpEKbMa4GuhGO5a4gD3jBmVKlFzQ7Rq8V3jOHnbNMkt33SNo_obZiTBM5rTpkQJKNHf6GbMMe8554qGa0bYCxTrxdKx5BStE6Osd-quJNA5D4LmbOQf7LI7Itbx7ndWnNP3h0_AycL8Ksf7O7_TvL9p_WdZbEo-jTZm3uFij-kqFjF5ff1ubyg0HxmNcgy8y8X3qkgVRf7JK-_UgKcEEIrwjj7DSHcqhM</recordid><startdate>201408</startdate><enddate>201408</enddate><creator>Yu, E. M</creator><creator>Liu, B. H</creator><creator>Wang, G. J</creator><creator>Yu, D. G</creator><creator>Xie, J</creator><creator>Xia, Y</creator><creator>Gong, W. B</creator><creator>Wang, H. H</creator><creator>Li, Z. F</creator><creator>Wei, N</creator><general>Blackwell Science</general><general>Blackwell Publishing Ltd</general><general>Wiley Subscription Services, Inc</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201408</creationdate><title>Molecular cloning of type I collagen cDNA and nutritional regulation of type I collagen mRNA expression in grass carp</title><author>Yu, E. M ; Liu, B. H ; Wang, G. J ; Yu, D. G ; Xie, J ; Xia, Y ; Gong, W. B ; Wang, H. H ; Li, Z. F ; Wei, N</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4482-21fb8fb3ea508d1d63b61add70b18fca5266d40011c76f30b1d0f15933da4c683</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Amino Acid Sequence</topic><topic>Animal Feed</topic><topic>Animal Nutritional Physiological Phenomena</topic><topic>Animals</topic><topic>Carps - genetics</topic><topic>Carps - metabolism</topic><topic>Cloning, Molecular</topic><topic>collagen</topic><topic>Collagen Type I - genetics</topic><topic>Collagen Type I - metabolism</topic><topic>complementary DNA</topic><topic>Computational Biology</topic><topic>crisp grass carp</topic><topic>Ctenopharyngodon idella</topic><topic>Diet - veterinary</topic><topic>DNA, Complementary - genetics</topic><topic>DNA, Complementary - metabolism</topic><topic>faba bean</topic><topic>faba beans</topic><topic>Fabaceae</topic><topic>freshwater fish</topic><topic>gene expression</topic><topic>Gene Expression Regulation - physiology</topic><topic>gills</topic><topic>hardness</topic><topic>hepatopancreas</topic><topic>intestines</topic><topic>isoelectric point</topic><topic>kidneys</topic><topic>messenger RNA</topic><topic>molecular cloning</topic><topic>Molecular Sequence Data</topic><topic>molecular weight</topic><topic>muscle hardness</topic><topic>muscles</topic><topic>Phylogeny</topic><topic>polypeptides</topic><topic>reverse transcriptase polymerase chain reaction</topic><topic>RNA, Messenger - genetics</topic><topic>RNA, Messenger - metabolism</topic><topic>spleen</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yu, E. M</creatorcontrib><creatorcontrib>Liu, B. H</creatorcontrib><creatorcontrib>Wang, G. J</creatorcontrib><creatorcontrib>Yu, D. G</creatorcontrib><creatorcontrib>Xie, J</creatorcontrib><creatorcontrib>Xia, Y</creatorcontrib><creatorcontrib>Gong, W. B</creatorcontrib><creatorcontrib>Wang, H. H</creatorcontrib><creatorcontrib>Li, Z. F</creatorcontrib><creatorcontrib>Wei, N</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of animal physiology and animal nutrition</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yu, E. M</au><au>Liu, B. H</au><au>Wang, G. J</au><au>Yu, D. G</au><au>Xie, J</au><au>Xia, Y</au><au>Gong, W. B</au><au>Wang, H. H</au><au>Li, Z. F</au><au>Wei, N</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular cloning of type I collagen cDNA and nutritional regulation of type I collagen mRNA expression in grass carp</atitle><jtitle>Journal of animal physiology and animal nutrition</jtitle><addtitle>J Anim Physiol Anim Nutr</addtitle><date>2014-08</date><risdate>2014</risdate><volume>98</volume><issue>4</issue><spage>755</spage><epage>765</epage><pages>755-765</pages><issn>0931-2439</issn><eissn>1439-0396</eissn><abstract>Grass carp (Ctenopharyngodon idellus) are important Chinese freshwater fish, and in China, the faba bean has been used as the sole food source for grass carp to transform them into crisp grass carp. Because of this, crisp grass carp has become an economically important fish because of its increased muscle hardness. To study the nutritional regulation of type I collagen in faba bean‐fed grass carp, we isolated type I collagen alpha 2 (COL1A2) on the basis of our isolation of COL1A1. The COL1A2 cDNA was found to be 4899 bp in length and included a 4059‐bp coding sequence (CDS) and encoded a polypeptide of 1352 AA. The protein peptide molecular weight was 127.39 kD, and the theoretical isoelectric point was 9.37. The COL1A2 protein possessed five α‐helixes, eight β‐sheets, 16 regions of triple helical repeats, 21 low‐complexity regions, 10 function domains and two zinc‐binding sites; however, no calcium‐binding sites were observed. The mRNA expression of COL1A1 and COL1A2 was assessed in eight tissues (muscle, hepatopancreas, intestine, gills, skin, fin, kidney and spleen) from grass carp and crisp grass carp by semi‐quantitative RT‐PCR. Expression of COL1A1 in the muscle, intestines and skin of crisp grass carp was higher than that in grass carp, and expression of COL1A2 in the muscle, gills, fin and skin of crisp grass carp was higher than that in grass carp. In the muscle of crisp grass carp, expression of COL1A1 and COL1A2 was higher than that in grass carp, which was further confirmed by real‐time PCR, and collagen content also was enhanced. These results demonstrated that type I collagen was closely related to the increased muscle hardness of faba bean‐fed grass carp.</abstract><cop>Germany</cop><pub>Blackwell Science</pub><pmid>24127725</pmid><doi>10.1111/jpn.12132</doi><tpages>11</tpages></addata></record>
fulltext fulltext
identifier ISSN: 0931-2439
ispartof Journal of animal physiology and animal nutrition, 2014-08, Vol.98 (4), p.755-765
issn 0931-2439
1439-0396
language eng
recordid cdi_proquest_miscellaneous_1558523660
source MEDLINE; Wiley Online Library All Journals
subjects Amino Acid Sequence
Animal Feed
Animal Nutritional Physiological Phenomena
Animals
Carps - genetics
Carps - metabolism
Cloning, Molecular
collagen
Collagen Type I - genetics
Collagen Type I - metabolism
complementary DNA
Computational Biology
crisp grass carp
Ctenopharyngodon idella
Diet - veterinary
DNA, Complementary - genetics
DNA, Complementary - metabolism
faba bean
faba beans
Fabaceae
freshwater fish
gene expression
Gene Expression Regulation - physiology
gills
hardness
hepatopancreas
intestines
isoelectric point
kidneys
messenger RNA
molecular cloning
Molecular Sequence Data
molecular weight
muscle hardness
muscles
Phylogeny
polypeptides
reverse transcriptase polymerase chain reaction
RNA, Messenger - genetics
RNA, Messenger - metabolism
spleen
title Molecular cloning of type I collagen cDNA and nutritional regulation of type I collagen mRNA expression in grass carp
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-07T10%3A43%3A25IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Molecular%20cloning%20of%20type%20I%20collagen%20cDNA%20and%20nutritional%20regulation%20of%20type%20I%20collagen%20mRNA%20expression%20in%20grass%20carp&rft.jtitle=Journal%20of%20animal%20physiology%20and%20animal%20nutrition&rft.au=Yu,%20E.%20M&rft.date=2014-08&rft.volume=98&rft.issue=4&rft.spage=755&rft.epage=765&rft.pages=755-765&rft.issn=0931-2439&rft.eissn=1439-0396&rft_id=info:doi/10.1111/jpn.12132&rft_dat=%3Cproquest_cross%3E3364357821%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1543289133&rft_id=info:pmid/24127725&rfr_iscdi=true