Thalassolituus marinus sp. nov., a hydrocarbon-utilizing marine bacterium
Gram-negative strains, motile by a single polar flagellum, non-pigmented and with a curved rod-shaped morphology, designated IMCC1826T and IMCC1883, were isolated from a surface seawater sample from the Yellow Sea. The two strains shared 99.9 % 16S rRNA gene sequence similarity and showed 92 % DNA–D...
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description | Gram-negative strains, motile by a single polar flagellum, non-pigmented and with a curved rod-shaped morphology, designated IMCC1826T and IMCC1883, were isolated from a surface seawater sample from the Yellow Sea. The two strains shared 99.9 % 16S rRNA gene sequence similarity and showed 92 % DNA–DNA relatedness, suggesting that they belonged to the same genomic species. Phylogenetic analysis based on 16S rRNA gene sequences showed that the two isolates were related most closely to the type strain of Thalassolituus oleivorans with a sequence similarity of 96.4 % and formed a robust phyletic lineage with T. oleivorans. DNA–DNA relatedness between the two strains and T. oleivorans DSM 14913T was 8.7–11.6 %. A putative alkane hydroxylase (alkB) gene was detected in strain IMCC1826T by PCR, but the amino acid sequence of the gene was distantly related to that of the AlkB homologue of T. oleivorans DSM 14913T. As expected from the presence of the alkB gene, the new strains utilized n-tetradecane and n-hexadecane as a carbon source. The DNA G+C content was 54.6–56.0 mol% and the main isoprenoid quinone detected was Q-9. Polar lipids of strain IMCC1826T included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and amino-group-containing lipids. On the basis of taxonomic data obtained in this study, strains IMCC1826T and IMCC1883 represent a novel species of the genus Thalassolituus, for which the name Thalassolituus marinus sp. nov. is proposed, with IMCC1826T ( = KCTC 23084T = NBRC 107590T) as the type strain. |
doi_str_mv | 10.1099/ijs.0.046383-0 |
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The two strains shared 99.9 % 16S rRNA gene sequence similarity and showed 92 % DNA–DNA relatedness, suggesting that they belonged to the same genomic species. Phylogenetic analysis based on 16S rRNA gene sequences showed that the two isolates were related most closely to the type strain of Thalassolituus oleivorans with a sequence similarity of 96.4 % and formed a robust phyletic lineage with T. oleivorans. DNA–DNA relatedness between the two strains and T. oleivorans DSM 14913T was 8.7–11.6 %. A putative alkane hydroxylase (alkB) gene was detected in strain IMCC1826T by PCR, but the amino acid sequence of the gene was distantly related to that of the AlkB homologue of T. oleivorans DSM 14913T. As expected from the presence of the alkB gene, the new strains utilized n-tetradecane and n-hexadecane as a carbon source. The DNA G+C content was 54.6–56.0 mol% and the main isoprenoid quinone detected was Q-9. Polar lipids of strain IMCC1826T included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and amino-group-containing lipids. On the basis of taxonomic data obtained in this study, strains IMCC1826T and IMCC1883 represent a novel species of the genus Thalassolituus, for which the name Thalassolituus marinus sp. nov. is proposed, with IMCC1826T ( = KCTC 23084T = NBRC 107590T) as the type strain.</description><identifier>ISSN: 1466-5034</identifier><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.046383-0</identifier><identifier>PMID: 23148102</identifier><language>eng</language><publisher>England: International Union of Microbiological Societies</publisher><subject>amino acid sequences ; Bacteria ; Bacterial Typing Techniques ; Base Composition ; carbon ; DNA ; DNA, Bacterial - genetics ; Fatty Acids - analysis ; flagellum ; genes ; hexadecane ; Hydrocarbons - metabolism ; Molecular Sequence Data ; nucleotide sequences ; Oceanospirillaceae - classification ; Oceanospirillaceae - genetics ; Oceanospirillaceae - isolation & purification ; Oceanospirillaceae - metabolism ; phosphatidylethanolamines ; Phylogeny ; polymerase chain reaction ; Republic of Korea ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; seawater ; Seawater - microbiology ; Sequence Analysis, DNA ; sequence homology ; Thalassolituus ; Vitamin K 2 - analogs & derivatives ; Vitamin K 2 - analysis ; Water Microbiology</subject><ispartof>International journal of systematic and evolutionary microbiology, 2013-06, Vol.63 (Pt 6), p.2234-2238</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c282t-1799c0d88e9255a67c0e072451ac937a91191b65dd06ad40c5fef10c77955caf3</citedby><cites>FETCH-LOGICAL-c282t-1799c0d88e9255a67c0e072451ac937a91191b65dd06ad40c5fef10c77955caf3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23148102$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Choi, Ahyoung</creatorcontrib><creatorcontrib>Cho, Jang-Cheon</creatorcontrib><title>Thalassolituus marinus sp. nov., a hydrocarbon-utilizing marine bacterium</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Gram-negative strains, motile by a single polar flagellum, non-pigmented and with a curved rod-shaped morphology, designated IMCC1826T and IMCC1883, were isolated from a surface seawater sample from the Yellow Sea. The two strains shared 99.9 % 16S rRNA gene sequence similarity and showed 92 % DNA–DNA relatedness, suggesting that they belonged to the same genomic species. Phylogenetic analysis based on 16S rRNA gene sequences showed that the two isolates were related most closely to the type strain of Thalassolituus oleivorans with a sequence similarity of 96.4 % and formed a robust phyletic lineage with T. oleivorans. DNA–DNA relatedness between the two strains and T. oleivorans DSM 14913T was 8.7–11.6 %. A putative alkane hydroxylase (alkB) gene was detected in strain IMCC1826T by PCR, but the amino acid sequence of the gene was distantly related to that of the AlkB homologue of T. oleivorans DSM 14913T. As expected from the presence of the alkB gene, the new strains utilized n-tetradecane and n-hexadecane as a carbon source. The DNA G+C content was 54.6–56.0 mol% and the main isoprenoid quinone detected was Q-9. Polar lipids of strain IMCC1826T included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and amino-group-containing lipids. On the basis of taxonomic data obtained in this study, strains IMCC1826T and IMCC1883 represent a novel species of the genus Thalassolituus, for which the name Thalassolituus marinus sp. nov. is proposed, with IMCC1826T ( = KCTC 23084T = NBRC 107590T) as the type strain.</description><subject>amino acid sequences</subject><subject>Bacteria</subject><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>carbon</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - analysis</subject><subject>flagellum</subject><subject>genes</subject><subject>hexadecane</subject><subject>Hydrocarbons - metabolism</subject><subject>Molecular Sequence Data</subject><subject>nucleotide sequences</subject><subject>Oceanospirillaceae - classification</subject><subject>Oceanospirillaceae - genetics</subject><subject>Oceanospirillaceae - isolation & purification</subject><subject>Oceanospirillaceae - metabolism</subject><subject>phosphatidylethanolamines</subject><subject>Phylogeny</subject><subject>polymerase chain reaction</subject><subject>Republic of Korea</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>seawater</subject><subject>Seawater - microbiology</subject><subject>Sequence Analysis, DNA</subject><subject>sequence homology</subject><subject>Thalassolituus</subject><subject>Vitamin K 2 - analogs & derivatives</subject><subject>Vitamin K 2 - analysis</subject><subject>Water Microbiology</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkT1PwzAQhi0EoqWwMkJGBhLOdmzHI6r4qFSJgXa2HMdpXaVJsROk8utJlYLYmO50eu6V7jmErjEkGKR8cJuQQAIppxmN4QSNccp5zICmp3_6EboIYQPQDwDO0YhQnGYYyBjNFmtd6RCayrVdF6Kt9q7ua9glUd18JveRjtb7wjdG-7yp4651lfty9WogbZRr01rvuu0lOit1FezVsU7Q8vlpMX2N528vs-njPDYkI22MhZQGiiyzkjCmuTBgQZCUYW0kFVpiLHHOWVEA10UKhpW2xGCEkIwZXdIJuhtyd7756Gxo1dYFY6tK17bpgsKMYU54BvR_lHLOhMACejQZUOObELwt1c67_sS9wqAOplVvWoEaTKvDws0xu8u3tvjFf9T2wO0AlLpReuVdUMt3Apgd3kClJPQbVaWB5g</recordid><startdate>20130601</startdate><enddate>20130601</enddate><creator>Choi, Ahyoung</creator><creator>Cho, Jang-Cheon</creator><general>International Union of Microbiological Societies</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7QL</scope><scope>7TN</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope></search><sort><creationdate>20130601</creationdate><title>Thalassolituus marinus sp. nov., a hydrocarbon-utilizing marine bacterium</title><author>Choi, Ahyoung ; Cho, Jang-Cheon</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c282t-1799c0d88e9255a67c0e072451ac937a91191b65dd06ad40c5fef10c77955caf3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>amino acid sequences</topic><topic>Bacteria</topic><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>carbon</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - analysis</topic><topic>flagellum</topic><topic>genes</topic><topic>hexadecane</topic><topic>Hydrocarbons - metabolism</topic><topic>Molecular Sequence Data</topic><topic>nucleotide sequences</topic><topic>Oceanospirillaceae - classification</topic><topic>Oceanospirillaceae - genetics</topic><topic>Oceanospirillaceae - isolation & purification</topic><topic>Oceanospirillaceae - metabolism</topic><topic>phosphatidylethanolamines</topic><topic>Phylogeny</topic><topic>polymerase chain reaction</topic><topic>Republic of Korea</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>seawater</topic><topic>Seawater - microbiology</topic><topic>Sequence Analysis, DNA</topic><topic>sequence homology</topic><topic>Thalassolituus</topic><topic>Vitamin K 2 - analogs & derivatives</topic><topic>Vitamin K 2 - analysis</topic><topic>Water Microbiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Choi, Ahyoung</creatorcontrib><creatorcontrib>Cho, Jang-Cheon</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Oceanic Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Choi, Ahyoung</au><au>Cho, Jang-Cheon</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Thalassolituus marinus sp. nov., a hydrocarbon-utilizing marine bacterium</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2013-06-01</date><risdate>2013</risdate><volume>63</volume><issue>Pt 6</issue><spage>2234</spage><epage>2238</epage><pages>2234-2238</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Gram-negative strains, motile by a single polar flagellum, non-pigmented and with a curved rod-shaped morphology, designated IMCC1826T and IMCC1883, were isolated from a surface seawater sample from the Yellow Sea. The two strains shared 99.9 % 16S rRNA gene sequence similarity and showed 92 % DNA–DNA relatedness, suggesting that they belonged to the same genomic species. Phylogenetic analysis based on 16S rRNA gene sequences showed that the two isolates were related most closely to the type strain of Thalassolituus oleivorans with a sequence similarity of 96.4 % and formed a robust phyletic lineage with T. oleivorans. DNA–DNA relatedness between the two strains and T. oleivorans DSM 14913T was 8.7–11.6 %. A putative alkane hydroxylase (alkB) gene was detected in strain IMCC1826T by PCR, but the amino acid sequence of the gene was distantly related to that of the AlkB homologue of T. oleivorans DSM 14913T. As expected from the presence of the alkB gene, the new strains utilized n-tetradecane and n-hexadecane as a carbon source. The DNA G+C content was 54.6–56.0 mol% and the main isoprenoid quinone detected was Q-9. Polar lipids of strain IMCC1826T included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and amino-group-containing lipids. On the basis of taxonomic data obtained in this study, strains IMCC1826T and IMCC1883 represent a novel species of the genus Thalassolituus, for which the name Thalassolituus marinus sp. nov. is proposed, with IMCC1826T ( = KCTC 23084T = NBRC 107590T) as the type strain.</abstract><cop>England</cop><pub>International Union of Microbiological Societies</pub><pmid>23148102</pmid><doi>10.1099/ijs.0.046383-0</doi><tpages>5</tpages></addata></record> |
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subjects | amino acid sequences Bacteria Bacterial Typing Techniques Base Composition carbon DNA DNA, Bacterial - genetics Fatty Acids - analysis flagellum genes hexadecane Hydrocarbons - metabolism Molecular Sequence Data nucleotide sequences Oceanospirillaceae - classification Oceanospirillaceae - genetics Oceanospirillaceae - isolation & purification Oceanospirillaceae - metabolism phosphatidylethanolamines Phylogeny polymerase chain reaction Republic of Korea ribosomal RNA RNA, Ribosomal, 16S - genetics seawater Seawater - microbiology Sequence Analysis, DNA sequence homology Thalassolituus Vitamin K 2 - analogs & derivatives Vitamin K 2 - analysis Water Microbiology |
title | Thalassolituus marinus sp. nov., a hydrocarbon-utilizing marine bacterium |
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