Parasphingopyxis lamellibrachiae gen. nov., sp. nov., isolated from a marine annelid worm
A Gram-stain-negative, aerobic, motile, orange-pigmented, slightly halophilic, rod-shaped bacterium, designated strain JAMH 0132T, was isolated from the trophosome of a tubeworm in Kagoshima Bay, Japan, and its taxonomic position was investigated using a polyphasic approach. The novel strain grew op...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2012-09, Vol.62 (Pt 9), p.2224-2228 |
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| creator | Uchida, Hiromi Hamana, Koei Miyazaki, Masayuki Yoshida, Takao Nogi, Yuichi |
| description | A Gram-stain-negative, aerobic, motile, orange-pigmented, slightly halophilic, rod-shaped bacterium, designated strain JAMH 0132T, was isolated from the trophosome of a tubeworm in Kagoshima Bay, Japan, and its taxonomic position was investigated using a polyphasic approach. The novel strain grew optimally at 28–30 °C and with about 2.0 % (w/v) NaCl. Chemotaxonomic analysis showed that Q-10 was the predominant respiratory quinone and that C18 : 1ω7c, C16 : 0 2-OH and C16 : 0 were the major fatty acids. Sphingoglycolipid, phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and phosphatidylcholine were the major polar lipids. The genomic DNA G+C content was 60.1 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain JAMH 0132T belonged to the family Sphingomonadaceae, within the class Alphaproteobacteria. The novel strain appeared most closely related to Sphingopyxis baekryungensis SW-150T (95.1 % 16S rRNA gene sequence similarity) and showed less sequence similarity with representatives of the genera Blastomonas, Sphingomonas, Sphingosinicella and Novosphingobium ( |
| doi_str_mv | 10.1099/ijs.0.034033-0 |
| format | Article |
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The novel strain grew optimally at 28–30 °C and with about 2.0 % (w/v) NaCl. Chemotaxonomic analysis showed that Q-10 was the predominant respiratory quinone and that C18 : 1ω7c, C16 : 0 2-OH and C16 : 0 were the major fatty acids. Sphingoglycolipid, phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and phosphatidylcholine were the major polar lipids. The genomic DNA G+C content was 60.1 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain JAMH 0132T belonged to the family Sphingomonadaceae, within the class Alphaproteobacteria. The novel strain appeared most closely related to Sphingopyxis baekryungensis SW-150T (95.1 % 16S rRNA gene sequence similarity) and showed less sequence similarity with representatives of the genera Blastomonas, Sphingomonas, Sphingosinicella and Novosphingobium (<94.8 %). In having no detectable polyamine, strain JAMH 0132T differed from members of all genera currently in the family Sphingomonadaceae. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain JAMH 0132T represents a novel species of a new genus in the family Sphingomonadaceae for which the name Parasphingopyxis lamellibrachiae gen. nov., sp. nov. is proposed. The type strain of Parasphingopyxis lamellibrachiae gen. nov., sp. nov. is JAMH 0132T ( = JCM 15549T = NCIMB 14486T).</description><identifier>ISSN: 1466-5034</identifier><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.034033-0</identifier><identifier>PMID: 22081711</identifier><language>eng</language><publisher>Reading: International Union of Microbiological Societies</publisher><subject>Animal, plant and microbial ecology ; Animals ; Annelida ; Annelida - microbiology ; bacteria ; Bacteriology ; Base Composition ; Bays ; Biological and medical sciences ; Blastomonas ; chemotaxonomy ; DNA ; DNA, Bacterial - genetics ; fatty acids ; Fatty Acids - analysis ; Fundamental and applied biological sciences. Psychology ; Japan ; Microbial ecology ; Microbiology ; Molecular Sequence Data ; new genus ; new species ; Novosphingobium ; nucleotide sequences ; phosphatidylcholines ; phosphatidylethanolamines ; Phylogeny ; polyamines ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; sequence homology ; sodium chloride ; Sphingomonadaceae - classification ; Sphingomonadaceae - genetics ; Sphingomonadaceae - isolation & purification ; Sphingomonas ; Sphingopyxis ; Systematics ; Various environments (extraatmospheric space, air, water)</subject><ispartof>International journal of systematic and evolutionary microbiology, 2012-09, Vol.62 (Pt 9), p.2224-2228</ispartof><rights>2014 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c448t-e0e147018732941112cfa41f25bbdff19c49ae89abbd8a2648d3b19d724e19b3</citedby><cites>FETCH-LOGICAL-c448t-e0e147018732941112cfa41f25bbdff19c49ae89abbd8a2648d3b19d724e19b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=26359674$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22081711$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Uchida, Hiromi</creatorcontrib><creatorcontrib>Hamana, Koei</creatorcontrib><creatorcontrib>Miyazaki, Masayuki</creatorcontrib><creatorcontrib>Yoshida, Takao</creatorcontrib><creatorcontrib>Nogi, Yuichi</creatorcontrib><title>Parasphingopyxis lamellibrachiae gen. nov., sp. nov., isolated from a marine annelid worm</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A Gram-stain-negative, aerobic, motile, orange-pigmented, slightly halophilic, rod-shaped bacterium, designated strain JAMH 0132T, was isolated from the trophosome of a tubeworm in Kagoshima Bay, Japan, and its taxonomic position was investigated using a polyphasic approach. The novel strain grew optimally at 28–30 °C and with about 2.0 % (w/v) NaCl. Chemotaxonomic analysis showed that Q-10 was the predominant respiratory quinone and that C18 : 1ω7c, C16 : 0 2-OH and C16 : 0 were the major fatty acids. Sphingoglycolipid, phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and phosphatidylcholine were the major polar lipids. The genomic DNA G+C content was 60.1 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain JAMH 0132T belonged to the family Sphingomonadaceae, within the class Alphaproteobacteria. The novel strain appeared most closely related to Sphingopyxis baekryungensis SW-150T (95.1 % 16S rRNA gene sequence similarity) and showed less sequence similarity with representatives of the genera Blastomonas, Sphingomonas, Sphingosinicella and Novosphingobium (<94.8 %). In having no detectable polyamine, strain JAMH 0132T differed from members of all genera currently in the family Sphingomonadaceae. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain JAMH 0132T represents a novel species of a new genus in the family Sphingomonadaceae for which the name Parasphingopyxis lamellibrachiae gen. nov., sp. nov. is proposed. The type strain of Parasphingopyxis lamellibrachiae gen. nov., sp. nov. is JAMH 0132T ( = JCM 15549T = NCIMB 14486T).</description><subject>Animal, plant and microbial ecology</subject><subject>Animals</subject><subject>Annelida</subject><subject>Annelida - microbiology</subject><subject>bacteria</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Bays</subject><subject>Biological and medical sciences</subject><subject>Blastomonas</subject><subject>chemotaxonomy</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>fatty acids</subject><subject>Fatty Acids - analysis</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Japan</subject><subject>Microbial ecology</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>new genus</subject><subject>new species</subject><subject>Novosphingobium</subject><subject>nucleotide sequences</subject><subject>phosphatidylcholines</subject><subject>phosphatidylethanolamines</subject><subject>Phylogeny</subject><subject>polyamines</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>sequence homology</subject><subject>sodium chloride</subject><subject>Sphingomonadaceae - classification</subject><subject>Sphingomonadaceae - genetics</subject><subject>Sphingomonadaceae - isolation & purification</subject><subject>Sphingomonas</subject><subject>Sphingopyxis</subject><subject>Systematics</subject><subject>Various environments (extraatmospheric space, air, water)</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1P3DAQxa2KCujCtcfiC1IPTZixnQ8fK0RbJKQiAQdO0SSxF6MkDvZuW_77erVL6Y3TzDz9NKP3hrGPCDmC1mfuMeaQg1QgZQbv2CGqssyKJOz91x-wDzE-AiQBYJ8dCAE1VoiH7P6aAsX5wU1LPz__cZEPNJphcG2g7sGR4Usz5Xzyv_IvPM4vnYt-oJXpuQ1-5MRHCm4ynKbJDK7nv30Yj9h7S0M0x7u6YLffLm7Pf2RXP79fnn-9yjql6lVmwKCqAOtKCq0QUXSWFFpRtG1vLepOaTK1pjTWJEpV97JF3VdCGdStXLDP27Vz8E9rE1fN6GKXHNBk_Do2WBRYCpkMv42C1CBL1Cqh-Rbtgo8xGNvMwSWTzwlqNsE3KfgGmm3wqSzYp93udTua_h_-knQCTncAxY4GG2jqXHzlSlnostpcPtlylnxDy5CYuxsBWGy-Jwuo5F_e85Nt</recordid><startdate>20120901</startdate><enddate>20120901</enddate><creator>Uchida, Hiromi</creator><creator>Hamana, Koei</creator><creator>Miyazaki, Masayuki</creator><creator>Yoshida, Takao</creator><creator>Nogi, Yuichi</creator><general>International Union of Microbiological Societies</general><general>Society for General Microbiology</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7TN</scope><scope>8FD</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>H99</scope><scope>L.F</scope><scope>L.G</scope><scope>P64</scope></search><sort><creationdate>20120901</creationdate><title>Parasphingopyxis lamellibrachiae gen. nov., sp. nov., isolated from a marine annelid worm</title><author>Uchida, Hiromi ; Hamana, Koei ; Miyazaki, Masayuki ; Yoshida, Takao ; Nogi, Yuichi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c448t-e0e147018732941112cfa41f25bbdff19c49ae89abbd8a2648d3b19d724e19b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Animal, plant and microbial ecology</topic><topic>Animals</topic><topic>Annelida</topic><topic>Annelida - microbiology</topic><topic>bacteria</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Bays</topic><topic>Biological and medical sciences</topic><topic>Blastomonas</topic><topic>chemotaxonomy</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>fatty acids</topic><topic>Fatty Acids - analysis</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Japan</topic><topic>Microbial ecology</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>new genus</topic><topic>new species</topic><topic>Novosphingobium</topic><topic>nucleotide sequences</topic><topic>phosphatidylcholines</topic><topic>phosphatidylethanolamines</topic><topic>Phylogeny</topic><topic>polyamines</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>sequence homology</topic><topic>sodium chloride</topic><topic>Sphingomonadaceae - classification</topic><topic>Sphingomonadaceae - genetics</topic><topic>Sphingomonadaceae - isolation & purification</topic><topic>Sphingomonas</topic><topic>Sphingopyxis</topic><topic>Systematics</topic><topic>Various environments (extraatmospheric space, air, water)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Uchida, Hiromi</creatorcontrib><creatorcontrib>Hamana, Koei</creatorcontrib><creatorcontrib>Miyazaki, Masayuki</creatorcontrib><creatorcontrib>Yoshida, Takao</creatorcontrib><creatorcontrib>Nogi, Yuichi</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Oceanic Abstracts</collection><collection>Technology Research Database</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>ASFA: Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Marine Biotechnology Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Uchida, Hiromi</au><au>Hamana, Koei</au><au>Miyazaki, Masayuki</au><au>Yoshida, Takao</au><au>Nogi, Yuichi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Parasphingopyxis lamellibrachiae gen. nov., sp. nov., isolated from a marine annelid worm</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2012-09-01</date><risdate>2012</risdate><volume>62</volume><issue>Pt 9</issue><spage>2224</spage><epage>2228</epage><pages>2224-2228</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A Gram-stain-negative, aerobic, motile, orange-pigmented, slightly halophilic, rod-shaped bacterium, designated strain JAMH 0132T, was isolated from the trophosome of a tubeworm in Kagoshima Bay, Japan, and its taxonomic position was investigated using a polyphasic approach. The novel strain grew optimally at 28–30 °C and with about 2.0 % (w/v) NaCl. Chemotaxonomic analysis showed that Q-10 was the predominant respiratory quinone and that C18 : 1ω7c, C16 : 0 2-OH and C16 : 0 were the major fatty acids. Sphingoglycolipid, phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and phosphatidylcholine were the major polar lipids. The genomic DNA G+C content was 60.1 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain JAMH 0132T belonged to the family Sphingomonadaceae, within the class Alphaproteobacteria. The novel strain appeared most closely related to Sphingopyxis baekryungensis SW-150T (95.1 % 16S rRNA gene sequence similarity) and showed less sequence similarity with representatives of the genera Blastomonas, Sphingomonas, Sphingosinicella and Novosphingobium (<94.8 %). In having no detectable polyamine, strain JAMH 0132T differed from members of all genera currently in the family Sphingomonadaceae. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain JAMH 0132T represents a novel species of a new genus in the family Sphingomonadaceae for which the name Parasphingopyxis lamellibrachiae gen. nov., sp. nov. is proposed. The type strain of Parasphingopyxis lamellibrachiae gen. nov., sp. nov. is JAMH 0132T ( = JCM 15549T = NCIMB 14486T).</abstract><cop>Reading</cop><pub>International Union of Microbiological Societies</pub><pmid>22081711</pmid><doi>10.1099/ijs.0.034033-0</doi><tpages>5</tpages></addata></record> |
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| subjects | Animal, plant and microbial ecology Animals Annelida Annelida - microbiology bacteria Bacteriology Base Composition Bays Biological and medical sciences Blastomonas chemotaxonomy DNA DNA, Bacterial - genetics fatty acids Fatty Acids - analysis Fundamental and applied biological sciences. Psychology Japan Microbial ecology Microbiology Molecular Sequence Data new genus new species Novosphingobium nucleotide sequences phosphatidylcholines phosphatidylethanolamines Phylogeny polyamines ribosomal RNA RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA sequence homology sodium chloride Sphingomonadaceae - classification Sphingomonadaceae - genetics Sphingomonadaceae - isolation & purification Sphingomonas Sphingopyxis Systematics Various environments (extraatmospheric space, air, water) |
| title | Parasphingopyxis lamellibrachiae gen. nov., sp. nov., isolated from a marine annelid worm |
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