Development of reference materials to detect 15 different human papillomavirus genotypes
Accurate human papillomavirus (HPV) typing is essential for evaluating and monitoring HPV vaccines in cervical cancer screening and in epidemiological surveys. In our country, different HPV DNA detection and genotyping methodologies have been established for diagnosing and monitoring HPV-related dis...
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Veröffentlicht in: | Clinica chimica acta 2014-06, Vol.433, p.243-248 |
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creator | Rhee, Jee Eun Kang, Young Soon Seo, Hyun Hee Choi, Ju-yeon Kee, Mee-Kyung Kim, Tae-Jin Hong, Sung Ran Kim, Sung Soon |
description | Accurate human papillomavirus (HPV) typing is essential for evaluating and monitoring HPV vaccines in cervical cancer screening and in epidemiological surveys. In our country, different HPV DNA detection and genotyping methodologies have been established for diagnosing and monitoring HPV-related disease in clinical practice and for research. However, there is a lack of reference materials to standardize the methods for HPV detection and genotyping. In this study, we constructed candidate reference materials comprising 15 targets (13 types of high-risk HPV, two types of low-risk HPV). We evaluated whether the candidate reference materials could be used as the reference for HPV detection and genotyping using quantitative real-time polymerase chain reaction. Standard curves for the wide linear range (101–106copies/μL) produced high correlation regression coefficient R2 of 0.99. The reaction efficiencies were 96.3% to 101.2% for the standard curves, indicating highly efficient reactions. Specific genotypes were detected in single or multiple mixed samples. Our results suggest that these reference materials may provide useful standards for standardizing quality assurance for different HPV-typing assays and for proficiency testing in diagnostic laboratories.
•The candidate reference materials comprising 15 targets are constructed.•Reference materials showed high correlation regression coefficients and reaction efficiencies.•Specific genotypes were detected in single or multiple mixed samples.•Reference materials are vital for standardizing quality assurance and for proficiency testing. |
doi_str_mv | 10.1016/j.cca.2014.02.013 |
format | Article |
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•The candidate reference materials comprising 15 targets are constructed.•Reference materials showed high correlation regression coefficients and reaction efficiencies.•Specific genotypes were detected in single or multiple mixed samples.•Reference materials are vital for standardizing quality assurance and for proficiency testing.</description><identifier>ISSN: 0009-8981</identifier><identifier>EISSN: 1873-3492</identifier><identifier>DOI: 10.1016/j.cca.2014.02.013</identifier><identifier>PMID: 24582654</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Clinical Laboratory Techniques ; DNA, Recombinant - genetics ; Genotype ; Genotyping Techniques - standards ; Human papillomavirus ; Humans ; Papillomaviridae - genetics ; Proficiency ; Reference material ; Reference Standards ; Reproducibility of Results</subject><ispartof>Clinica chimica acta, 2014-06, Vol.433, p.243-248</ispartof><rights>2014</rights><rights>Copyright © 2014. Published by Elsevier B.V.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c305t-6164ad3ab3b420b88678c38966a2b5cbf5d4e433e8680c9b2609020b393d31bd3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0009898114000898$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24582654$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Rhee, Jee Eun</creatorcontrib><creatorcontrib>Kang, Young Soon</creatorcontrib><creatorcontrib>Seo, Hyun Hee</creatorcontrib><creatorcontrib>Choi, Ju-yeon</creatorcontrib><creatorcontrib>Kee, Mee-Kyung</creatorcontrib><creatorcontrib>Kim, Tae-Jin</creatorcontrib><creatorcontrib>Hong, Sung Ran</creatorcontrib><creatorcontrib>Kim, Sung Soon</creatorcontrib><title>Development of reference materials to detect 15 different human papillomavirus genotypes</title><title>Clinica chimica acta</title><addtitle>Clin Chim Acta</addtitle><description>Accurate human papillomavirus (HPV) typing is essential for evaluating and monitoring HPV vaccines in cervical cancer screening and in epidemiological surveys. In our country, different HPV DNA detection and genotyping methodologies have been established for diagnosing and monitoring HPV-related disease in clinical practice and for research. However, there is a lack of reference materials to standardize the methods for HPV detection and genotyping. In this study, we constructed candidate reference materials comprising 15 targets (13 types of high-risk HPV, two types of low-risk HPV). We evaluated whether the candidate reference materials could be used as the reference for HPV detection and genotyping using quantitative real-time polymerase chain reaction. Standard curves for the wide linear range (101–106copies/μL) produced high correlation regression coefficient R2 of 0.99. The reaction efficiencies were 96.3% to 101.2% for the standard curves, indicating highly efficient reactions. Specific genotypes were detected in single or multiple mixed samples. Our results suggest that these reference materials may provide useful standards for standardizing quality assurance for different HPV-typing assays and for proficiency testing in diagnostic laboratories.
•The candidate reference materials comprising 15 targets are constructed.•Reference materials showed high correlation regression coefficients and reaction efficiencies.•Specific genotypes were detected in single or multiple mixed samples.•Reference materials are vital for standardizing quality assurance and for proficiency testing.</description><subject>Clinical Laboratory Techniques</subject><subject>DNA, Recombinant - genetics</subject><subject>Genotype</subject><subject>Genotyping Techniques - standards</subject><subject>Human papillomavirus</subject><subject>Humans</subject><subject>Papillomaviridae - genetics</subject><subject>Proficiency</subject><subject>Reference material</subject><subject>Reference Standards</subject><subject>Reproducibility of Results</subject><issn>0009-8981</issn><issn>1873-3492</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kEtr3DAUhUVpSCZpfkA2Qctu7OgdmaxK0jwgkE0L3QlZum412JYjyQP599V00i67ulz4zoHzIXRBSUsJVVfb1jnbMkJFS1hLKP-ANlRf84aLjn1EG0JI1-hO0xN0mvO2voIoeoxOmJCaKSk26Mcd7GCMywRzwXHACQZIMDvAky2Qgh0zLhF7KOAKphL7MPwhCv61TnbGi13COMbJ7kJaM_4JcyxvC-RP6GioYTh_v2fo-_3Xb7ePzfPLw9Ptl-fGcSJLo6gS1nPb814w0mutrrXjulPKsl66fpBegOActNLEdT1TpCMV5B33nPaen6HPh94lxdcVcjFTyA7G0c4Q12yo5KSTtVVWlB5Ql2LOdalZUphsejOUmL1QszVVqNkLNYSZKrRmLt_r134C_y_x12AFbg4A1JG7AMlkF_YCfUhVmfEx_Kf-N2j2hf0</recordid><startdate>20140610</startdate><enddate>20140610</enddate><creator>Rhee, Jee Eun</creator><creator>Kang, Young Soon</creator><creator>Seo, Hyun Hee</creator><creator>Choi, Ju-yeon</creator><creator>Kee, Mee-Kyung</creator><creator>Kim, Tae-Jin</creator><creator>Hong, Sung Ran</creator><creator>Kim, Sung Soon</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20140610</creationdate><title>Development of reference materials to detect 15 different human papillomavirus genotypes</title><author>Rhee, Jee Eun ; Kang, Young Soon ; Seo, Hyun Hee ; Choi, Ju-yeon ; Kee, Mee-Kyung ; Kim, Tae-Jin ; Hong, Sung Ran ; Kim, Sung Soon</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c305t-6164ad3ab3b420b88678c38966a2b5cbf5d4e433e8680c9b2609020b393d31bd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Clinical Laboratory Techniques</topic><topic>DNA, Recombinant - genetics</topic><topic>Genotype</topic><topic>Genotyping Techniques - standards</topic><topic>Human papillomavirus</topic><topic>Humans</topic><topic>Papillomaviridae - genetics</topic><topic>Proficiency</topic><topic>Reference material</topic><topic>Reference Standards</topic><topic>Reproducibility of Results</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Rhee, Jee Eun</creatorcontrib><creatorcontrib>Kang, Young Soon</creatorcontrib><creatorcontrib>Seo, Hyun Hee</creatorcontrib><creatorcontrib>Choi, Ju-yeon</creatorcontrib><creatorcontrib>Kee, Mee-Kyung</creatorcontrib><creatorcontrib>Kim, Tae-Jin</creatorcontrib><creatorcontrib>Hong, Sung Ran</creatorcontrib><creatorcontrib>Kim, Sung Soon</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Clinica chimica acta</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Rhee, Jee Eun</au><au>Kang, Young Soon</au><au>Seo, Hyun Hee</au><au>Choi, Ju-yeon</au><au>Kee, Mee-Kyung</au><au>Kim, Tae-Jin</au><au>Hong, Sung Ran</au><au>Kim, Sung Soon</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Development of reference materials to detect 15 different human papillomavirus genotypes</atitle><jtitle>Clinica chimica acta</jtitle><addtitle>Clin Chim Acta</addtitle><date>2014-06-10</date><risdate>2014</risdate><volume>433</volume><spage>243</spage><epage>248</epage><pages>243-248</pages><issn>0009-8981</issn><eissn>1873-3492</eissn><abstract>Accurate human papillomavirus (HPV) typing is essential for evaluating and monitoring HPV vaccines in cervical cancer screening and in epidemiological surveys. In our country, different HPV DNA detection and genotyping methodologies have been established for diagnosing and monitoring HPV-related disease in clinical practice and for research. However, there is a lack of reference materials to standardize the methods for HPV detection and genotyping. In this study, we constructed candidate reference materials comprising 15 targets (13 types of high-risk HPV, two types of low-risk HPV). We evaluated whether the candidate reference materials could be used as the reference for HPV detection and genotyping using quantitative real-time polymerase chain reaction. Standard curves for the wide linear range (101–106copies/μL) produced high correlation regression coefficient R2 of 0.99. The reaction efficiencies were 96.3% to 101.2% for the standard curves, indicating highly efficient reactions. Specific genotypes were detected in single or multiple mixed samples. Our results suggest that these reference materials may provide useful standards for standardizing quality assurance for different HPV-typing assays and for proficiency testing in diagnostic laboratories.
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subjects | Clinical Laboratory Techniques DNA, Recombinant - genetics Genotype Genotyping Techniques - standards Human papillomavirus Humans Papillomaviridae - genetics Proficiency Reference material Reference Standards Reproducibility of Results |
title | Development of reference materials to detect 15 different human papillomavirus genotypes |
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