Influence of drift and admixture on population structure of American black bears (Ursus americanus) in the Central Interior Highlands, USA, 50 years after translocation
Bottlenecks, founder events, and genetic drift often result in decreased genetic diversity and increased population differentiation. These events may follow abundance declines due to natural or anthropogenic perturbations, where translocations may be an effective conservation strategy to increase po...
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Veröffentlicht in: | Molecular ecology 2014-05, Vol.23 (10), p.2414-2427 |
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creator | Puckett, Emily E Kristensen, Thea V Wilton, Clay M Lyda, Sara B Noyce, Karen V Holahan, Paula M Leslie, David M. Jr Beringer, Jeff Belant, Jerrold L White, Don Jr Eggert, Lori S |
description | Bottlenecks, founder events, and genetic drift often result in decreased genetic diversity and increased population differentiation. These events may follow abundance declines due to natural or anthropogenic perturbations, where translocations may be an effective conservation strategy to increase population size. American black bears (Ursus americanus) were nearly extirpated from the Central Interior Highlands, USA by 1920. In an effort to restore bears, 254 individuals were translocated from Minnesota, USA, and Manitoba, Canada, into the Ouachita and Ozark Mountains from 1958 to 1968. Using 15 microsatellites and mitochondrial haplotypes, we observed contemporary genetic diversity and differentiation between the source and supplemented populations. We inferred four genetic clusters: Source, Ouachitas, Ozarks, and a cluster in Missouri where no individuals were translocated. Coalescent models using approximate Bayesian computation identified an admixture model as having the highest posterior probability (0.942) over models where the translocation was unsuccessful or acted as a founder event. Nuclear genetic diversity was highest in the source (AR = 9.11) and significantly lower in the translocated populations (AR = 7.07–7.34; P = 0.004). The Missouri cluster had the lowest genetic diversity (AR = 5.48) and served as a natural experiment showing the utility of translocations to increase genetic diversity following demographic bottlenecks. Differentiation was greater between the two admixed populations than either compared to the source, suggesting that genetic drift acted strongly over the eight generations since the translocation. The Ouachitas and Missouri were previously hypothesized to be remnant lineages. We observed a pretranslocation remnant signature in Missouri but not in the Ouachitas. |
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Jr ; Beringer, Jeff ; Belant, Jerrold L ; White, Don Jr ; Eggert, Lori S</creator><creatorcontrib>Puckett, Emily E ; Kristensen, Thea V ; Wilton, Clay M ; Lyda, Sara B ; Noyce, Karen V ; Holahan, Paula M ; Leslie, David M. Jr ; Beringer, Jeff ; Belant, Jerrold L ; White, Don Jr ; Eggert, Lori S</creatorcontrib><description>Bottlenecks, founder events, and genetic drift often result in decreased genetic diversity and increased population differentiation. These events may follow abundance declines due to natural or anthropogenic perturbations, where translocations may be an effective conservation strategy to increase population size. American black bears (Ursus americanus) were nearly extirpated from the Central Interior Highlands, USA by 1920. In an effort to restore bears, 254 individuals were translocated from Minnesota, USA, and Manitoba, Canada, into the Ouachita and Ozark Mountains from 1958 to 1968. Using 15 microsatellites and mitochondrial haplotypes, we observed contemporary genetic diversity and differentiation between the source and supplemented populations. We inferred four genetic clusters: Source, Ouachitas, Ozarks, and a cluster in Missouri where no individuals were translocated. Coalescent models using approximate Bayesian computation identified an admixture model as having the highest posterior probability (0.942) over models where the translocation was unsuccessful or acted as a founder event. Nuclear genetic diversity was highest in the source (AR = 9.11) and significantly lower in the translocated populations (AR = 7.07–7.34; P = 0.004). The Missouri cluster had the lowest genetic diversity (AR = 5.48) and served as a natural experiment showing the utility of translocations to increase genetic diversity following demographic bottlenecks. Differentiation was greater between the two admixed populations than either compared to the source, suggesting that genetic drift acted strongly over the eight generations since the translocation. The Ouachitas and Missouri were previously hypothesized to be remnant lineages. We observed a pretranslocation remnant signature in Missouri but not in the Ouachitas.</description><identifier>ISSN: 0962-1083</identifier><identifier>EISSN: 1365-294X</identifier><identifier>DOI: 10.1111/mec.12748</identifier><identifier>PMID: 24712442</identifier><language>eng</language><publisher>England: Blackwell Science</publisher><subject>Animals ; approximate Bayesian computation ; Bayes Theorem ; Bears ; DNA, Mitochondrial - genetics ; Founder Effect ; Genetic diversity ; Genetic Drift ; Genetic Variation ; Genetics, Population ; Haplotypes ; highlands ; Microsatellite Repeats ; Models, Genetic ; Molecular Sequence Data ; Population genetics ; population growth ; population size ; population structure ; probability ; reintroduction ; Sequence Analysis, DNA ; United States ; Ursidae - genetics ; Ursus americanus</subject><ispartof>Molecular ecology, 2014-05, Vol.23 (10), p.2414-2427</ispartof><rights>Published 2014. This article is a U.S. Government work and is in the public domain in the USA.</rights><rights>Copyright © 2014 John Wiley & Sons Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3638-448e28427229aee53aedcd2c1074dc7f5abcf675feedc1ad6333498e982b5d4c3</citedby><cites>FETCH-LOGICAL-c3638-448e28427229aee53aedcd2c1074dc7f5abcf675feedc1ad6333498e982b5d4c3</cites><orcidid>0000-0002-9325-4629</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fmec.12748$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fmec.12748$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>315,781,785,1418,27929,27930,45579,45580</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24712442$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Puckett, Emily E</creatorcontrib><creatorcontrib>Kristensen, Thea V</creatorcontrib><creatorcontrib>Wilton, Clay M</creatorcontrib><creatorcontrib>Lyda, Sara B</creatorcontrib><creatorcontrib>Noyce, Karen V</creatorcontrib><creatorcontrib>Holahan, Paula M</creatorcontrib><creatorcontrib>Leslie, David M. Jr</creatorcontrib><creatorcontrib>Beringer, Jeff</creatorcontrib><creatorcontrib>Belant, Jerrold L</creatorcontrib><creatorcontrib>White, Don Jr</creatorcontrib><creatorcontrib>Eggert, Lori S</creatorcontrib><title>Influence of drift and admixture on population structure of American black bears (Ursus americanus) in the Central Interior Highlands, USA, 50 years after translocation</title><title>Molecular ecology</title><addtitle>Mol Ecol</addtitle><description>Bottlenecks, founder events, and genetic drift often result in decreased genetic diversity and increased population differentiation. These events may follow abundance declines due to natural or anthropogenic perturbations, where translocations may be an effective conservation strategy to increase population size. American black bears (Ursus americanus) were nearly extirpated from the Central Interior Highlands, USA by 1920. In an effort to restore bears, 254 individuals were translocated from Minnesota, USA, and Manitoba, Canada, into the Ouachita and Ozark Mountains from 1958 to 1968. Using 15 microsatellites and mitochondrial haplotypes, we observed contemporary genetic diversity and differentiation between the source and supplemented populations. We inferred four genetic clusters: Source, Ouachitas, Ozarks, and a cluster in Missouri where no individuals were translocated. Coalescent models using approximate Bayesian computation identified an admixture model as having the highest posterior probability (0.942) over models where the translocation was unsuccessful or acted as a founder event. Nuclear genetic diversity was highest in the source (AR = 9.11) and significantly lower in the translocated populations (AR = 7.07–7.34; P = 0.004). The Missouri cluster had the lowest genetic diversity (AR = 5.48) and served as a natural experiment showing the utility of translocations to increase genetic diversity following demographic bottlenecks. Differentiation was greater between the two admixed populations than either compared to the source, suggesting that genetic drift acted strongly over the eight generations since the translocation. The Ouachitas and Missouri were previously hypothesized to be remnant lineages. We observed a pretranslocation remnant signature in Missouri but not in the Ouachitas.</description><subject>Animals</subject><subject>approximate Bayesian computation</subject><subject>Bayes Theorem</subject><subject>Bears</subject><subject>DNA, Mitochondrial - genetics</subject><subject>Founder Effect</subject><subject>Genetic diversity</subject><subject>Genetic Drift</subject><subject>Genetic Variation</subject><subject>Genetics, Population</subject><subject>Haplotypes</subject><subject>highlands</subject><subject>Microsatellite Repeats</subject><subject>Models, Genetic</subject><subject>Molecular Sequence Data</subject><subject>Population genetics</subject><subject>population growth</subject><subject>population size</subject><subject>population structure</subject><subject>probability</subject><subject>reintroduction</subject><subject>Sequence Analysis, DNA</subject><subject>United States</subject><subject>Ursidae - genetics</subject><subject>Ursus americanus</subject><issn>0962-1083</issn><issn>1365-294X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkc1u1DAUhSMEokNhwQuAJTat1LT-TZzlaGinI9qiqoxgZznOdes2P4OdiM4b8Zh4JtMukJDwxta53z33WidJ3hN8TOI5acAcE5pz-SKZEJaJlBb8x8tkgouMpgRLtpe8CeEeY8KoEK-TPcpzQjmnk-T3orX1AK0B1FlUeWd7pNsK6apxj_3go9yiVbcaat27-Ay9H8yoWzRtwDujW1TW2jygErQP6GDpwxCQ3tWGcIhci_o7QDNoe69rtGj7WOs8One3d3WcFo7Q8mZ6hARG662HtpFAEW5D3Znt5LfJK6vrAO92936yPDv9NjtPL77OF7PpRWpYxmTKuQQqOc0pLTSAYBoqU1FDcM4rk1uhS2OzXFiIOtFVxhjjhYRC0lJU3LD95GD0Xfnu5wChV40LBuq4J3RDUETQohCMCPE_qMizjBZZRD_9hd53g2_jRzYUp6yIkUXqcKSM70LwYNXKu0b7tSJYbZJWMWm1TTqyH3aOQ9lA9Uw-RRuBkxH45WpY_9tJXZ7OnizTscOFHh6fO7R_UFnOcqG-X83V9eez-Zfrq0u14T-OvNWd0rfeBbW8oZhwjLGUmeTsD1Ugy_U</recordid><startdate>201405</startdate><enddate>201405</enddate><creator>Puckett, Emily E</creator><creator>Kristensen, Thea V</creator><creator>Wilton, Clay M</creator><creator>Lyda, Sara B</creator><creator>Noyce, Karen V</creator><creator>Holahan, Paula M</creator><creator>Leslie, David M. Jr</creator><creator>Beringer, Jeff</creator><creator>Belant, Jerrold L</creator><creator>White, Don Jr</creator><creator>Eggert, Lori S</creator><general>Blackwell Science</general><general>Blackwell Publishing Ltd</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-9325-4629</orcidid></search><sort><creationdate>201405</creationdate><title>Influence of drift and admixture on population structure of American black bears (Ursus americanus) in the Central Interior Highlands, USA, 50 years after translocation</title><author>Puckett, Emily E ; Kristensen, Thea V ; Wilton, Clay M ; Lyda, Sara B ; Noyce, Karen V ; Holahan, Paula M ; Leslie, David M. 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Jr</creatorcontrib><creatorcontrib>Beringer, Jeff</creatorcontrib><creatorcontrib>Belant, Jerrold L</creatorcontrib><creatorcontrib>White, Don Jr</creatorcontrib><creatorcontrib>Eggert, Lori S</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Puckett, Emily E</au><au>Kristensen, Thea V</au><au>Wilton, Clay M</au><au>Lyda, Sara B</au><au>Noyce, Karen V</au><au>Holahan, Paula M</au><au>Leslie, David M. Jr</au><au>Beringer, Jeff</au><au>Belant, Jerrold L</au><au>White, Don Jr</au><au>Eggert, Lori S</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Influence of drift and admixture on population structure of American black bears (Ursus americanus) in the Central Interior Highlands, USA, 50 years after translocation</atitle><jtitle>Molecular ecology</jtitle><addtitle>Mol Ecol</addtitle><date>2014-05</date><risdate>2014</risdate><volume>23</volume><issue>10</issue><spage>2414</spage><epage>2427</epage><pages>2414-2427</pages><issn>0962-1083</issn><eissn>1365-294X</eissn><abstract>Bottlenecks, founder events, and genetic drift often result in decreased genetic diversity and increased population differentiation. These events may follow abundance declines due to natural or anthropogenic perturbations, where translocations may be an effective conservation strategy to increase population size. American black bears (Ursus americanus) were nearly extirpated from the Central Interior Highlands, USA by 1920. In an effort to restore bears, 254 individuals were translocated from Minnesota, USA, and Manitoba, Canada, into the Ouachita and Ozark Mountains from 1958 to 1968. Using 15 microsatellites and mitochondrial haplotypes, we observed contemporary genetic diversity and differentiation between the source and supplemented populations. We inferred four genetic clusters: Source, Ouachitas, Ozarks, and a cluster in Missouri where no individuals were translocated. Coalescent models using approximate Bayesian computation identified an admixture model as having the highest posterior probability (0.942) over models where the translocation was unsuccessful or acted as a founder event. Nuclear genetic diversity was highest in the source (AR = 9.11) and significantly lower in the translocated populations (AR = 7.07–7.34; P = 0.004). The Missouri cluster had the lowest genetic diversity (AR = 5.48) and served as a natural experiment showing the utility of translocations to increase genetic diversity following demographic bottlenecks. Differentiation was greater between the two admixed populations than either compared to the source, suggesting that genetic drift acted strongly over the eight generations since the translocation. The Ouachitas and Missouri were previously hypothesized to be remnant lineages. We observed a pretranslocation remnant signature in Missouri but not in the Ouachitas.</abstract><cop>England</cop><pub>Blackwell Science</pub><pmid>24712442</pmid><doi>10.1111/mec.12748</doi><tpages>14</tpages><orcidid>https://orcid.org/0000-0002-9325-4629</orcidid></addata></record> |
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subjects | Animals approximate Bayesian computation Bayes Theorem Bears DNA, Mitochondrial - genetics Founder Effect Genetic diversity Genetic Drift Genetic Variation Genetics, Population Haplotypes highlands Microsatellite Repeats Models, Genetic Molecular Sequence Data Population genetics population growth population size population structure probability reintroduction Sequence Analysis, DNA United States Ursidae - genetics Ursus americanus |
title | Influence of drift and admixture on population structure of American black bears (Ursus americanus) in the Central Interior Highlands, USA, 50 years after translocation |
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