Complete Mitochondrial Genome Analysis and Clinical Documentation of a Five‐Generational Indian Family with Mitochondrial 1555A>G Mutation and Postlingual Hearing Loss
Summary Hearing loss is the most common sensory disorder and is genetically heterogeneous. Apart from nuclear gene mutations, a number of inherited mitochondrial mutations have also been implicated. The m.1555A>G mutation in the mitochondrial MT‐RNR1 gene is reported as the most common mutation c...
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Veröffentlicht in: | Annals of human genetics 2014-05, Vol.78 (3), p.217-234 |
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creator | Subathra, Mahalingam Selvakumari, Mathiyalagan Ramesh, Arabandi Ramakrishnan, Rajagopalan Karan, Kalpita Rashmi Kaur, Manpreet Manikandan, Mayakannan Srikumari Srisailapathy, C. R. |
description | Summary
Hearing loss is the most common sensory disorder and is genetically heterogeneous. Apart from nuclear gene mutations, a number of inherited mitochondrial mutations have also been implicated. The m.1555A>G mutation in the mitochondrial MT‐RNR1 gene is reported as the most common mutation causing nonsyndromic hearing loss in various ethnic populations. We report here for the first time the clinical, genetic and molecular characterisation of a single large five‐generational Tamil‐speaking South Indian family with maternally inherited nonsyndromic postlingual hearing loss. Molecular analysis led to identification of m.1555A>G in 28 maternal relatives with variable degree of phenotypic expression. The penetrance of hearing loss among the maternal relatives in this family was 55%. Sequence analysis of the complete mitochondrial genome in 36 members of this pedigree identified 25 known variants and one novel variant co‐transmitted along with m.1555A>G mutation. The mtDNA haplotype analysis revealed that the maternal relatives carry the R*T2 haplotype similar to Europeans and South Asians. Sequencing of the coding exon of GJB2 nuclear gene did not show any pathogenic mutations. The results suggest that other nuclear or environmental modifying factors could have played a role in the differential expression of mutation m.1555A>G in postlingual hearing loss in this family. |
doi_str_mv | 10.1111/ahg.12061 |
format | Article |
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Hearing loss is the most common sensory disorder and is genetically heterogeneous. Apart from nuclear gene mutations, a number of inherited mitochondrial mutations have also been implicated. The m.1555A>G mutation in the mitochondrial MT‐RNR1 gene is reported as the most common mutation causing nonsyndromic hearing loss in various ethnic populations. We report here for the first time the clinical, genetic and molecular characterisation of a single large five‐generational Tamil‐speaking South Indian family with maternally inherited nonsyndromic postlingual hearing loss. Molecular analysis led to identification of m.1555A>G in 28 maternal relatives with variable degree of phenotypic expression. The penetrance of hearing loss among the maternal relatives in this family was 55%. Sequence analysis of the complete mitochondrial genome in 36 members of this pedigree identified 25 known variants and one novel variant co‐transmitted along with m.1555A>G mutation. The mtDNA haplotype analysis revealed that the maternal relatives carry the R*T2 haplotype similar to Europeans and South Asians. Sequencing of the coding exon of GJB2 nuclear gene did not show any pathogenic mutations. The results suggest that other nuclear or environmental modifying factors could have played a role in the differential expression of mutation m.1555A>G in postlingual hearing loss in this family.</description><identifier>ISSN: 0003-4800</identifier><identifier>EISSN: 1469-1809</identifier><identifier>DOI: 10.1111/ahg.12061</identifier><identifier>PMID: 24660976</identifier><identifier>CODEN: ANHGAA</identifier><language>eng</language><publisher>England: Wiley Subscription Services, Inc</publisher><subject>Base Sequence ; Connexin 26 ; Connexins - genetics ; DNA Primers - genetics ; Female ; Genes ; Genome, Mitochondrial - genetics ; Genomes ; haplogroups ; Haplotypes ; Haplotypes - genetics ; Hearing loss ; Hearing Loss - genetics ; Hearing protection ; Humans ; India ; m.1555A>G mutation ; mitochondrial genome ; Molecular Sequence Data ; Mutation ; Pedigree ; penetrance ; Point Mutation - genetics ; Postlingual hearing loss ; pure‐tone audiometry ; RNA, Ribosomal - genetics ; Sequence Analysis, DNA ; variable severity</subject><ispartof>Annals of human genetics, 2014-05, Vol.78 (3), p.217-234</ispartof><rights>2014 John Wiley & Sons Ltd/University College London</rights><rights>2014 John Wiley & Sons Ltd/University College London.</rights><rights>Copyright © 2014 John Wiley & Sons Ltd/University College London</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3521-191c46dfac4e426b4a72da7e16054c9d31976ed222d61c7ae4b3aaccef1f2713</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fahg.12061$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fahg.12061$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1416,1432,27923,27924,45573,45574,46408,46832</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24660976$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Subathra, Mahalingam</creatorcontrib><creatorcontrib>Selvakumari, Mathiyalagan</creatorcontrib><creatorcontrib>Ramesh, Arabandi</creatorcontrib><creatorcontrib>Ramakrishnan, Rajagopalan</creatorcontrib><creatorcontrib>Karan, Kalpita Rashmi</creatorcontrib><creatorcontrib>Kaur, Manpreet</creatorcontrib><creatorcontrib>Manikandan, Mayakannan</creatorcontrib><creatorcontrib>Srikumari Srisailapathy, C. R.</creatorcontrib><title>Complete Mitochondrial Genome Analysis and Clinical Documentation of a Five‐Generational Indian Family with Mitochondrial 1555A>G Mutation and Postlingual Hearing Loss</title><title>Annals of human genetics</title><addtitle>Ann Hum Genet</addtitle><description>Summary
Hearing loss is the most common sensory disorder and is genetically heterogeneous. Apart from nuclear gene mutations, a number of inherited mitochondrial mutations have also been implicated. The m.1555A>G mutation in the mitochondrial MT‐RNR1 gene is reported as the most common mutation causing nonsyndromic hearing loss in various ethnic populations. We report here for the first time the clinical, genetic and molecular characterisation of a single large five‐generational Tamil‐speaking South Indian family with maternally inherited nonsyndromic postlingual hearing loss. Molecular analysis led to identification of m.1555A>G in 28 maternal relatives with variable degree of phenotypic expression. The penetrance of hearing loss among the maternal relatives in this family was 55%. Sequence analysis of the complete mitochondrial genome in 36 members of this pedigree identified 25 known variants and one novel variant co‐transmitted along with m.1555A>G mutation. The mtDNA haplotype analysis revealed that the maternal relatives carry the R*T2 haplotype similar to Europeans and South Asians. Sequencing of the coding exon of GJB2 nuclear gene did not show any pathogenic mutations. The results suggest that other nuclear or environmental modifying factors could have played a role in the differential expression of mutation m.1555A>G in postlingual hearing loss in this family.</description><subject>Base Sequence</subject><subject>Connexin 26</subject><subject>Connexins - genetics</subject><subject>DNA Primers - genetics</subject><subject>Female</subject><subject>Genes</subject><subject>Genome, Mitochondrial - genetics</subject><subject>Genomes</subject><subject>haplogroups</subject><subject>Haplotypes</subject><subject>Haplotypes - genetics</subject><subject>Hearing loss</subject><subject>Hearing Loss - genetics</subject><subject>Hearing protection</subject><subject>Humans</subject><subject>India</subject><subject>m.1555A>G mutation</subject><subject>mitochondrial genome</subject><subject>Molecular Sequence Data</subject><subject>Mutation</subject><subject>Pedigree</subject><subject>penetrance</subject><subject>Point Mutation - genetics</subject><subject>Postlingual hearing loss</subject><subject>pure‐tone audiometry</subject><subject>RNA, Ribosomal - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>variable severity</subject><issn>0003-4800</issn><issn>1469-1809</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNksFuEzEQhi0EoqFw4AWQJS5ctvXYXu_uBSkKJKmUCg69rxx7tnHltcN6lyo3HoHX4LV4Etw0cOgJX2Y083l-2fMT8hbYBeRzqXe3F8CZgmdkBlI1BdSseU5mjDFRyJqxM_IqpTvGgNdSvCRnXCrFmkrNyK9F7PceR6TXboxmF4MdnPZ0hSH2SOdB-0Nyiepg6cK74Exufopm6jGMenQx0NhRTZfuO_7-8TNfw-FYzthVsE4HutS98wd678bdExEoy3L-cUWvp9OoB5WvMY1Z6HbKwBr1kFO6iSm9Ji867RO-OcVzcrP8fLNYF5svq6vFfFMYUXIooAEjle20kSi52kpdcasrBMVKaRorIL8bLefcKjCVRrkVWhuDHXS8AnFOPjyO3Q_x24RpbHuXDHqvA8YptVByJmrFhPwPFKQUrG54Rt8_Qe_iNORPOlJClUI0IlPvTtS07dG2-8H1eji0f9eVgctH4N55PPzrA2sffNBmH7RHH7Tz9eqYiD-LK6Zt</recordid><startdate>201405</startdate><enddate>201405</enddate><creator>Subathra, Mahalingam</creator><creator>Selvakumari, Mathiyalagan</creator><creator>Ramesh, Arabandi</creator><creator>Ramakrishnan, Rajagopalan</creator><creator>Karan, Kalpita Rashmi</creator><creator>Kaur, Manpreet</creator><creator>Manikandan, Mayakannan</creator><creator>Srikumari Srisailapathy, C. R.</creator><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201405</creationdate><title>Complete Mitochondrial Genome Analysis and Clinical Documentation of a Five‐Generational Indian Family with Mitochondrial 1555A>G Mutation and Postlingual Hearing Loss</title><author>Subathra, Mahalingam ; Selvakumari, Mathiyalagan ; Ramesh, Arabandi ; Ramakrishnan, Rajagopalan ; Karan, Kalpita Rashmi ; Kaur, Manpreet ; Manikandan, Mayakannan ; Srikumari Srisailapathy, C. R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3521-191c46dfac4e426b4a72da7e16054c9d31976ed222d61c7ae4b3aaccef1f2713</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Base Sequence</topic><topic>Connexin 26</topic><topic>Connexins - genetics</topic><topic>DNA Primers - genetics</topic><topic>Female</topic><topic>Genes</topic><topic>Genome, Mitochondrial - genetics</topic><topic>Genomes</topic><topic>haplogroups</topic><topic>Haplotypes</topic><topic>Haplotypes - genetics</topic><topic>Hearing loss</topic><topic>Hearing Loss - genetics</topic><topic>Hearing protection</topic><topic>Humans</topic><topic>India</topic><topic>m.1555A>G mutation</topic><topic>mitochondrial genome</topic><topic>Molecular Sequence Data</topic><topic>Mutation</topic><topic>Pedigree</topic><topic>penetrance</topic><topic>Point Mutation - genetics</topic><topic>Postlingual hearing loss</topic><topic>pure‐tone audiometry</topic><topic>RNA, Ribosomal - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>variable severity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Subathra, Mahalingam</creatorcontrib><creatorcontrib>Selvakumari, Mathiyalagan</creatorcontrib><creatorcontrib>Ramesh, Arabandi</creatorcontrib><creatorcontrib>Ramakrishnan, Rajagopalan</creatorcontrib><creatorcontrib>Karan, Kalpita Rashmi</creatorcontrib><creatorcontrib>Kaur, Manpreet</creatorcontrib><creatorcontrib>Manikandan, Mayakannan</creatorcontrib><creatorcontrib>Srikumari Srisailapathy, C. R.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Annals of human genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Subathra, Mahalingam</au><au>Selvakumari, Mathiyalagan</au><au>Ramesh, Arabandi</au><au>Ramakrishnan, Rajagopalan</au><au>Karan, Kalpita Rashmi</au><au>Kaur, Manpreet</au><au>Manikandan, Mayakannan</au><au>Srikumari Srisailapathy, C. R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete Mitochondrial Genome Analysis and Clinical Documentation of a Five‐Generational Indian Family with Mitochondrial 1555A>G Mutation and Postlingual Hearing Loss</atitle><jtitle>Annals of human genetics</jtitle><addtitle>Ann Hum Genet</addtitle><date>2014-05</date><risdate>2014</risdate><volume>78</volume><issue>3</issue><spage>217</spage><epage>234</epage><pages>217-234</pages><issn>0003-4800</issn><eissn>1469-1809</eissn><coden>ANHGAA</coden><abstract>Summary
Hearing loss is the most common sensory disorder and is genetically heterogeneous. Apart from nuclear gene mutations, a number of inherited mitochondrial mutations have also been implicated. The m.1555A>G mutation in the mitochondrial MT‐RNR1 gene is reported as the most common mutation causing nonsyndromic hearing loss in various ethnic populations. We report here for the first time the clinical, genetic and molecular characterisation of a single large five‐generational Tamil‐speaking South Indian family with maternally inherited nonsyndromic postlingual hearing loss. Molecular analysis led to identification of m.1555A>G in 28 maternal relatives with variable degree of phenotypic expression. The penetrance of hearing loss among the maternal relatives in this family was 55%. Sequence analysis of the complete mitochondrial genome in 36 members of this pedigree identified 25 known variants and one novel variant co‐transmitted along with m.1555A>G mutation. The mtDNA haplotype analysis revealed that the maternal relatives carry the R*T2 haplotype similar to Europeans and South Asians. Sequencing of the coding exon of GJB2 nuclear gene did not show any pathogenic mutations. The results suggest that other nuclear or environmental modifying factors could have played a role in the differential expression of mutation m.1555A>G in postlingual hearing loss in this family.</abstract><cop>England</cop><pub>Wiley Subscription Services, Inc</pub><pmid>24660976</pmid><doi>10.1111/ahg.12061</doi><tpages>18</tpages></addata></record> |
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subjects | Base Sequence Connexin 26 Connexins - genetics DNA Primers - genetics Female Genes Genome, Mitochondrial - genetics Genomes haplogroups Haplotypes Haplotypes - genetics Hearing loss Hearing Loss - genetics Hearing protection Humans India m.1555A>G mutation mitochondrial genome Molecular Sequence Data Mutation Pedigree penetrance Point Mutation - genetics Postlingual hearing loss pure‐tone audiometry RNA, Ribosomal - genetics Sequence Analysis, DNA variable severity |
title | Complete Mitochondrial Genome Analysis and Clinical Documentation of a Five‐Generational Indian Family with Mitochondrial 1555A>G Mutation and Postlingual Hearing Loss |
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