Population Variation Revealed High-Altitude Adaptation of Tibetan Mastiffs

With the assistance of their human companions, dogs have dispersed into new environments during the expansion of human civilization. Tibetan Mastiff (TM), a native of the Tibetan Plateau, was derived from the domesticated Chinese native dog and, like Tibetans, has adapted to the extreme environment...

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Veröffentlicht in:Molecular biology and evolution 2014-05, Vol.31 (5), p.1200-1205
Hauptverfasser: Li, Yan, Wu, Dong-Dong, Boyko, Adam R., Wang, Guo-Dong, Wu, Shi-Fang, Irwin, David M., Zhang, Ya-Ping
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container_end_page 1205
container_issue 5
container_start_page 1200
container_title Molecular biology and evolution
container_volume 31
creator Li, Yan
Wu, Dong-Dong
Boyko, Adam R.
Wang, Guo-Dong
Wu, Shi-Fang
Irwin, David M.
Zhang, Ya-Ping
description With the assistance of their human companions, dogs have dispersed into new environments during the expansion of human civilization. Tibetan Mastiff (TM), a native of the Tibetan Plateau, was derived from the domesticated Chinese native dog and, like Tibetans, has adapted to the extreme environment of high altitude. Here, we genotyped genome-wide single-nucleotide polymorphisms (SNPs) from 32 TMs and compared them with SNPs from 20 Chinese native dogs and 14 gray wolves (Canis lupus). We identified 16 genes with signals of positive selection in the TM, with 12 of these candidate genes associated with functions that have roles in adaptation to high-altitude adaptation, such as EPAS1, SIRT7, PLXNA4, and MAFG that have roles in responses to hypoxia. This study provides important information on the genetic diversity of the TM and potential mechanisms for adaptation to hypoxia.
doi_str_mv 10.1093/molbev/msu070
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Tibetan Mastiff (TM), a native of the Tibetan Plateau, was derived from the domesticated Chinese native dog and, like Tibetans, has adapted to the extreme environment of high altitude. Here, we genotyped genome-wide single-nucleotide polymorphisms (SNPs) from 32 TMs and compared them with SNPs from 20 Chinese native dogs and 14 gray wolves (Canis lupus). We identified 16 genes with signals of positive selection in the TM, with 12 of these candidate genes associated with functions that have roles in adaptation to high-altitude adaptation, such as EPAS1, SIRT7, PLXNA4, and MAFG that have roles in responses to hypoxia. This study provides important information on the genetic diversity of the TM and potential mechanisms for adaptation to hypoxia.</description><identifier>ISSN: 0737-4038</identifier><identifier>EISSN: 1537-1719</identifier><identifier>DOI: 10.1093/molbev/msu070</identifier><identifier>PMID: 24520091</identifier><language>eng</language><publisher>United States: Oxford University Press</publisher><subject>Acclimatization - genetics ; Acclimatization - physiology ; Adaptation ; Altitude ; Animal populations ; Animals ; China ; Dogs ; Dogs - classification ; Dogs - genetics ; Dogs - physiology ; Evolution, Molecular ; Genetic diversity ; Genetic Variation ; Genetics, Population ; Genome ; Humans ; Hypoxia ; Models, Genetic ; Pets - classification ; Pets - genetics ; Pets - physiology ; Phylogeny ; Polymorphism, Single Nucleotide ; Tibet ; Wolves - genetics</subject><ispartof>Molecular biology and evolution, 2014-05, Vol.31 (5), p.1200-1205</ispartof><rights>The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2014</rights><rights>Copyright Oxford Publishing Limited(England) May 2014</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c459t-ffa345bc2969bdde9c798380010191646c98339848b7c6022aeb8896259631a73</citedby><cites>FETCH-LOGICAL-c459t-ffa345bc2969bdde9c798380010191646c98339848b7c6022aeb8896259631a73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,1599,27905,27906</link.rule.ids><linktorsrc>$$Uhttps://dx.doi.org/10.1093/molbev/msu070$$EView_record_in_Oxford_University_Press$$FView_record_in_$$GOxford_University_Press</linktorsrc><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24520091$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Yan</creatorcontrib><creatorcontrib>Wu, Dong-Dong</creatorcontrib><creatorcontrib>Boyko, Adam R.</creatorcontrib><creatorcontrib>Wang, Guo-Dong</creatorcontrib><creatorcontrib>Wu, Shi-Fang</creatorcontrib><creatorcontrib>Irwin, David M.</creatorcontrib><creatorcontrib>Zhang, Ya-Ping</creatorcontrib><title>Population Variation Revealed High-Altitude Adaptation of Tibetan Mastiffs</title><title>Molecular biology and evolution</title><addtitle>Mol Biol Evol</addtitle><description>With the assistance of their human companions, dogs have dispersed into new environments during the expansion of human civilization. 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subjects Acclimatization - genetics
Acclimatization - physiology
Adaptation
Altitude
Animal populations
Animals
China
Dogs
Dogs - classification
Dogs - genetics
Dogs - physiology
Evolution, Molecular
Genetic diversity
Genetic Variation
Genetics, Population
Genome
Humans
Hypoxia
Models, Genetic
Pets - classification
Pets - genetics
Pets - physiology
Phylogeny
Polymorphism, Single Nucleotide
Tibet
Wolves - genetics
title Population Variation Revealed High-Altitude Adaptation of Tibetan Mastiffs
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