Population Variation Revealed High-Altitude Adaptation of Tibetan Mastiffs
With the assistance of their human companions, dogs have dispersed into new environments during the expansion of human civilization. Tibetan Mastiff (TM), a native of the Tibetan Plateau, was derived from the domesticated Chinese native dog and, like Tibetans, has adapted to the extreme environment...
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Veröffentlicht in: | Molecular biology and evolution 2014-05, Vol.31 (5), p.1200-1205 |
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creator | Li, Yan Wu, Dong-Dong Boyko, Adam R. Wang, Guo-Dong Wu, Shi-Fang Irwin, David M. Zhang, Ya-Ping |
description | With the assistance of their human companions, dogs have dispersed into new environments during the expansion of human civilization. Tibetan Mastiff (TM), a native of the Tibetan Plateau, was derived from the domesticated Chinese native dog and, like Tibetans, has adapted to the extreme environment of high altitude. Here, we genotyped genome-wide single-nucleotide polymorphisms (SNPs) from 32 TMs and compared them with SNPs from 20 Chinese native dogs and 14 gray wolves (Canis lupus). We identified 16 genes with signals of positive selection in the TM, with 12 of these candidate genes associated with functions that have roles in adaptation to high-altitude adaptation, such as EPAS1, SIRT7, PLXNA4, and MAFG that have roles in responses to hypoxia. This study provides important information on the genetic diversity of the TM and potential mechanisms for adaptation to hypoxia. |
doi_str_mv | 10.1093/molbev/msu070 |
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Tibetan Mastiff (TM), a native of the Tibetan Plateau, was derived from the domesticated Chinese native dog and, like Tibetans, has adapted to the extreme environment of high altitude. Here, we genotyped genome-wide single-nucleotide polymorphisms (SNPs) from 32 TMs and compared them with SNPs from 20 Chinese native dogs and 14 gray wolves (Canis lupus). We identified 16 genes with signals of positive selection in the TM, with 12 of these candidate genes associated with functions that have roles in adaptation to high-altitude adaptation, such as EPAS1, SIRT7, PLXNA4, and MAFG that have roles in responses to hypoxia. This study provides important information on the genetic diversity of the TM and potential mechanisms for adaptation to hypoxia.</description><identifier>ISSN: 0737-4038</identifier><identifier>EISSN: 1537-1719</identifier><identifier>DOI: 10.1093/molbev/msu070</identifier><identifier>PMID: 24520091</identifier><language>eng</language><publisher>United States: Oxford University Press</publisher><subject>Acclimatization - genetics ; Acclimatization - physiology ; Adaptation ; Altitude ; Animal populations ; Animals ; China ; Dogs ; Dogs - classification ; Dogs - genetics ; Dogs - physiology ; Evolution, Molecular ; Genetic diversity ; Genetic Variation ; Genetics, Population ; Genome ; Humans ; Hypoxia ; Models, Genetic ; Pets - classification ; Pets - genetics ; Pets - physiology ; Phylogeny ; Polymorphism, Single Nucleotide ; Tibet ; Wolves - genetics</subject><ispartof>Molecular biology and evolution, 2014-05, Vol.31 (5), p.1200-1205</ispartof><rights>The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2014</rights><rights>Copyright Oxford Publishing Limited(England) May 2014</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c459t-ffa345bc2969bdde9c798380010191646c98339848b7c6022aeb8896259631a73</citedby><cites>FETCH-LOGICAL-c459t-ffa345bc2969bdde9c798380010191646c98339848b7c6022aeb8896259631a73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,1599,27905,27906</link.rule.ids><linktorsrc>$$Uhttps://dx.doi.org/10.1093/molbev/msu070$$EView_record_in_Oxford_University_Press$$FView_record_in_$$GOxford_University_Press</linktorsrc><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24520091$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Li, Yan</creatorcontrib><creatorcontrib>Wu, Dong-Dong</creatorcontrib><creatorcontrib>Boyko, Adam R.</creatorcontrib><creatorcontrib>Wang, Guo-Dong</creatorcontrib><creatorcontrib>Wu, Shi-Fang</creatorcontrib><creatorcontrib>Irwin, David M.</creatorcontrib><creatorcontrib>Zhang, Ya-Ping</creatorcontrib><title>Population Variation Revealed High-Altitude Adaptation of Tibetan Mastiffs</title><title>Molecular biology and evolution</title><addtitle>Mol Biol Evol</addtitle><description>With the assistance of their human companions, dogs have dispersed into new environments during the expansion of human civilization. Tibetan Mastiff (TM), a native of the Tibetan Plateau, was derived from the domesticated Chinese native dog and, like Tibetans, has adapted to the extreme environment of high altitude. Here, we genotyped genome-wide single-nucleotide polymorphisms (SNPs) from 32 TMs and compared them with SNPs from 20 Chinese native dogs and 14 gray wolves (Canis lupus). We identified 16 genes with signals of positive selection in the TM, with 12 of these candidate genes associated with functions that have roles in adaptation to high-altitude adaptation, such as EPAS1, SIRT7, PLXNA4, and MAFG that have roles in responses to hypoxia. This study provides important information on the genetic diversity of the TM and potential mechanisms for adaptation to hypoxia.</description><subject>Acclimatization - genetics</subject><subject>Acclimatization - physiology</subject><subject>Adaptation</subject><subject>Altitude</subject><subject>Animal populations</subject><subject>Animals</subject><subject>China</subject><subject>Dogs</subject><subject>Dogs - classification</subject><subject>Dogs - genetics</subject><subject>Dogs - physiology</subject><subject>Evolution, Molecular</subject><subject>Genetic diversity</subject><subject>Genetic Variation</subject><subject>Genetics, Population</subject><subject>Genome</subject><subject>Humans</subject><subject>Hypoxia</subject><subject>Models, Genetic</subject><subject>Pets - classification</subject><subject>Pets - genetics</subject><subject>Pets - physiology</subject><subject>Phylogeny</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Tibet</subject><subject>Wolves - genetics</subject><issn>0737-4038</issn><issn>1537-1719</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkM1LwzAYxoMobk6PXqXgxUtdvpqP4xjqlIki02tJ21Qz2qU2ycD_3kinghdP7_PCj4eHHwCnCF4iKMm0tU2ht9PWBcjhHhijjPAUcST3wRjymCkkYgSOnFtDiChl7BCMMM0whBKNwd2j7UKjvLGb5EX1ZkhPeqtVo6tkYV7f0lnjjQ-VTmaV6vxA2DpZmUJ7tUnulfOmrt0xOKhV4_TJ7k7A8_XVar5Ilw83t_PZMi1pJn1a14rQrCixZLKoKi1LLgURcRxEEjHKyvgSKagoeMkgxkoXQkiGM8kIUpxMwMXQ2_X2PWjn89a4UjeN2mgbXI4yJATiEIqInv9B1zb0m7guUhhjSbmEkUoHquytc72u8643reo_cgTzL8n5IDkfJEf-bNcailZXP_S31d-FNnT_dH0CnoOFzQ</recordid><startdate>20140501</startdate><enddate>20140501</enddate><creator>Li, Yan</creator><creator>Wu, Dong-Dong</creator><creator>Boyko, Adam R.</creator><creator>Wang, Guo-Dong</creator><creator>Wu, Shi-Fang</creator><creator>Irwin, David M.</creator><creator>Zhang, Ya-Ping</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20140501</creationdate><title>Population Variation Revealed High-Altitude Adaptation of Tibetan Mastiffs</title><author>Li, Yan ; Wu, Dong-Dong ; Boyko, Adam R. ; Wang, Guo-Dong ; Wu, Shi-Fang ; Irwin, David M. ; Zhang, Ya-Ping</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c459t-ffa345bc2969bdde9c798380010191646c98339848b7c6022aeb8896259631a73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Acclimatization - genetics</topic><topic>Acclimatization - physiology</topic><topic>Adaptation</topic><topic>Altitude</topic><topic>Animal populations</topic><topic>Animals</topic><topic>China</topic><topic>Dogs</topic><topic>Dogs - classification</topic><topic>Dogs - genetics</topic><topic>Dogs - physiology</topic><topic>Evolution, Molecular</topic><topic>Genetic diversity</topic><topic>Genetic Variation</topic><topic>Genetics, Population</topic><topic>Genome</topic><topic>Humans</topic><topic>Hypoxia</topic><topic>Models, Genetic</topic><topic>Pets - classification</topic><topic>Pets - genetics</topic><topic>Pets - physiology</topic><topic>Phylogeny</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Tibet</topic><topic>Wolves - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Li, Yan</creatorcontrib><creatorcontrib>Wu, Dong-Dong</creatorcontrib><creatorcontrib>Boyko, Adam R.</creatorcontrib><creatorcontrib>Wang, Guo-Dong</creatorcontrib><creatorcontrib>Wu, Shi-Fang</creatorcontrib><creatorcontrib>Irwin, David M.</creatorcontrib><creatorcontrib>Zhang, Ya-Ping</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular biology and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Li, Yan</au><au>Wu, Dong-Dong</au><au>Boyko, Adam R.</au><au>Wang, Guo-Dong</au><au>Wu, Shi-Fang</au><au>Irwin, David M.</au><au>Zhang, Ya-Ping</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Population Variation Revealed High-Altitude Adaptation of Tibetan Mastiffs</atitle><jtitle>Molecular biology and evolution</jtitle><addtitle>Mol Biol Evol</addtitle><date>2014-05-01</date><risdate>2014</risdate><volume>31</volume><issue>5</issue><spage>1200</spage><epage>1205</epage><pages>1200-1205</pages><issn>0737-4038</issn><eissn>1537-1719</eissn><abstract>With the assistance of their human companions, dogs have dispersed into new environments during the expansion of human civilization. Tibetan Mastiff (TM), a native of the Tibetan Plateau, was derived from the domesticated Chinese native dog and, like Tibetans, has adapted to the extreme environment of high altitude. Here, we genotyped genome-wide single-nucleotide polymorphisms (SNPs) from 32 TMs and compared them with SNPs from 20 Chinese native dogs and 14 gray wolves (Canis lupus). We identified 16 genes with signals of positive selection in the TM, with 12 of these candidate genes associated with functions that have roles in adaptation to high-altitude adaptation, such as EPAS1, SIRT7, PLXNA4, and MAFG that have roles in responses to hypoxia. This study provides important information on the genetic diversity of the TM and potential mechanisms for adaptation to hypoxia.</abstract><cop>United States</cop><pub>Oxford University Press</pub><pmid>24520091</pmid><doi>10.1093/molbev/msu070</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Acclimatization - genetics Acclimatization - physiology Adaptation Altitude Animal populations Animals China Dogs Dogs - classification Dogs - genetics Dogs - physiology Evolution, Molecular Genetic diversity Genetic Variation Genetics, Population Genome Humans Hypoxia Models, Genetic Pets - classification Pets - genetics Pets - physiology Phylogeny Polymorphism, Single Nucleotide Tibet Wolves - genetics |
title | Population Variation Revealed High-Altitude Adaptation of Tibetan Mastiffs |
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