Quantitative trait locus analysis of Verticillium wilt resistance in an introgressed recombinant inbred population of Upland cotton
Verticillium wilt (VW) of Upland cotton (Gossypium hirsutum L.) is caused by the soil-borne fungal pathogen Verticillium dahlia Kleb. The availability of VW-resistant cultivars is vital for control of this economically important disease, but there is a paucity of Upland cotton breeding lines and cul...
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| Veröffentlicht in: | Molecular breeding 2014-03, Vol.33 (3), p.709-720 |
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| creator | Fang, Hui Zhou, Huiping Sanogo, Soum Lipka, Alexander E Fang, David D Percy, Richard G Hughs, Sidney E Jones, Don C Gore, Michael A Zhang, Jinfa |
| description | Verticillium wilt (VW) of Upland cotton (Gossypium hirsutum L.) is caused by the soil-borne fungal pathogen Verticillium dahlia Kleb. The availability of VW-resistant cultivars is vital for control of this economically important disease, but there is a paucity of Upland cotton breeding lines and cultivars with a high level of resistance to VW. In general, G. barbadense L. (source of Pima cotton) is more VW-resistant than Upland cotton. However, the transfer of VW resistance from G. barbadense to Upland cotton is challenging because of hybrid breakdown in the F2 and successive generations of interspecific populations. We conducted two replicated greenhouse studies (tests 1 and 2) to assess the heritability of VW resistance to a defoliating V. dahliae isolate and identify genetic markers associated with VW resistance in an Upland cotton recombinant inbred mapping population that has stable introgression from Pima cotton. Disease ratings at the seedling stage on several different days after the first inoculation (DAI) in test 1, as well as the percentages of infected and defoliated leaves at 2 DAI in test 2, were found to be low to moderately heritable, indicating the importance of a replicated progeny test in selection for VW resistance. With a newly constructed linkage map consisting of 882 simple sequence repeat, single nucleotide polymorphism, and resistance gene analog–amplified fragment length polymorphism marker loci, we identified a total of 21 quantitative trait loci (QTLs) on 11 chromosomes and two linkage groups associated with VW resistance at several different DAIs in greenhouse tests 1 and 2. The markers associated with the VW resistance QTLs will facilitate fine mapping and cloning of VW resistance genes and genomics-assisted breeding for VW-resistant cultivars. |
| doi_str_mv | 10.1007/s11032-013-9987-9 |
| format | Article |
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The availability of VW-resistant cultivars is vital for control of this economically important disease, but there is a paucity of Upland cotton breeding lines and cultivars with a high level of resistance to VW. In general, G. barbadense L. (source of Pima cotton) is more VW-resistant than Upland cotton. However, the transfer of VW resistance from G. barbadense to Upland cotton is challenging because of hybrid breakdown in the F2 and successive generations of interspecific populations. We conducted two replicated greenhouse studies (tests 1 and 2) to assess the heritability of VW resistance to a defoliating V. dahliae isolate and identify genetic markers associated with VW resistance in an Upland cotton recombinant inbred mapping population that has stable introgression from Pima cotton. Disease ratings at the seedling stage on several different days after the first inoculation (DAI) in test 1, as well as the percentages of infected and defoliated leaves at 2 DAI in test 2, were found to be low to moderately heritable, indicating the importance of a replicated progeny test in selection for VW resistance. With a newly constructed linkage map consisting of 882 simple sequence repeat, single nucleotide polymorphism, and resistance gene analog–amplified fragment length polymorphism marker loci, we identified a total of 21 quantitative trait loci (QTLs) on 11 chromosomes and two linkage groups associated with VW resistance at several different DAIs in greenhouse tests 1 and 2. The markers associated with the VW resistance QTLs will facilitate fine mapping and cloning of VW resistance genes and genomics-assisted breeding for VW-resistant cultivars.</description><identifier>ISSN: 1380-3743</identifier><identifier>EISSN: 1572-9788</identifier><identifier>DOI: 10.1007/s11032-013-9987-9</identifier><language>eng</language><publisher>Dordrecht: Springer-Verlag</publisher><subject>Amplified fragment length polymorphism ; Biomedical and Life Sciences ; Biotechnology ; Breeding ; breeding lines ; chromosome mapping ; Chromosomes ; Cloning ; Cotton ; Cultivars ; Dahlia ; Disease control ; Economic importance ; fungi ; Gene mapping ; Gene polymorphism ; genes ; Genetic markers ; Genomics ; Gossypium barbadense ; Gossypium hirsutum ; greenhouse experimentation ; Greenhouses ; Heritability ; hybrids ; Inbreeding ; Inoculation ; Interspecific ; introgression ; leaves ; Life Sciences ; linkage groups ; loci ; Mapping ; Markers ; Molecular biology ; Nucleotides ; pathogens ; Plant biology ; Plant breeding ; Plant Genetics and Genomics ; Plant growth ; Plant Pathology ; Plant Physiology ; Plant Sciences ; Polymorphism ; Progeny ; Quantitative trait loci ; Seedlings ; Single-nucleotide polymorphism ; Verticillium ; Verticillium wilt ; wilting</subject><ispartof>Molecular breeding, 2014-03, Vol.33 (3), p.709-720</ispartof><rights>Springer Science+Business Media Dordrecht 2013</rights><rights>Molecular Breeding is a copyright of Springer, (2013). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c443t-3783c619d4044530b181a33f8d4ba9040b60b6c361db45f08057bc712682d97d3</citedby><cites>FETCH-LOGICAL-c443t-3783c619d4044530b181a33f8d4ba9040b60b6c361db45f08057bc712682d97d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11032-013-9987-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11032-013-9987-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids></links><search><creatorcontrib>Fang, Hui</creatorcontrib><creatorcontrib>Zhou, Huiping</creatorcontrib><creatorcontrib>Sanogo, Soum</creatorcontrib><creatorcontrib>Lipka, Alexander E</creatorcontrib><creatorcontrib>Fang, David D</creatorcontrib><creatorcontrib>Percy, Richard G</creatorcontrib><creatorcontrib>Hughs, Sidney E</creatorcontrib><creatorcontrib>Jones, Don C</creatorcontrib><creatorcontrib>Gore, Michael A</creatorcontrib><creatorcontrib>Zhang, Jinfa</creatorcontrib><title>Quantitative trait locus analysis of Verticillium wilt resistance in an introgressed recombinant inbred population of Upland cotton</title><title>Molecular breeding</title><addtitle>Mol Breeding</addtitle><description>Verticillium wilt (VW) of Upland cotton (Gossypium hirsutum L.) is caused by the soil-borne fungal pathogen Verticillium dahlia Kleb. The availability of VW-resistant cultivars is vital for control of this economically important disease, but there is a paucity of Upland cotton breeding lines and cultivars with a high level of resistance to VW. In general, G. barbadense L. (source of Pima cotton) is more VW-resistant than Upland cotton. However, the transfer of VW resistance from G. barbadense to Upland cotton is challenging because of hybrid breakdown in the F2 and successive generations of interspecific populations. We conducted two replicated greenhouse studies (tests 1 and 2) to assess the heritability of VW resistance to a defoliating V. dahliae isolate and identify genetic markers associated with VW resistance in an Upland cotton recombinant inbred mapping population that has stable introgression from Pima cotton. Disease ratings at the seedling stage on several different days after the first inoculation (DAI) in test 1, as well as the percentages of infected and defoliated leaves at 2 DAI in test 2, were found to be low to moderately heritable, indicating the importance of a replicated progeny test in selection for VW resistance. With a newly constructed linkage map consisting of 882 simple sequence repeat, single nucleotide polymorphism, and resistance gene analog–amplified fragment length polymorphism marker loci, we identified a total of 21 quantitative trait loci (QTLs) on 11 chromosomes and two linkage groups associated with VW resistance at several different DAIs in greenhouse tests 1 and 2. The markers associated with the VW resistance QTLs will facilitate fine mapping and cloning of VW resistance genes and genomics-assisted breeding for VW-resistant cultivars.</description><subject>Amplified fragment length polymorphism</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Breeding</subject><subject>breeding lines</subject><subject>chromosome mapping</subject><subject>Chromosomes</subject><subject>Cloning</subject><subject>Cotton</subject><subject>Cultivars</subject><subject>Dahlia</subject><subject>Disease control</subject><subject>Economic importance</subject><subject>fungi</subject><subject>Gene mapping</subject><subject>Gene polymorphism</subject><subject>genes</subject><subject>Genetic markers</subject><subject>Genomics</subject><subject>Gossypium barbadense</subject><subject>Gossypium hirsutum</subject><subject>greenhouse experimentation</subject><subject>Greenhouses</subject><subject>Heritability</subject><subject>hybrids</subject><subject>Inbreeding</subject><subject>Inoculation</subject><subject>Interspecific</subject><subject>introgression</subject><subject>leaves</subject><subject>Life Sciences</subject><subject>linkage groups</subject><subject>loci</subject><subject>Mapping</subject><subject>Markers</subject><subject>Molecular biology</subject><subject>Nucleotides</subject><subject>pathogens</subject><subject>Plant biology</subject><subject>Plant breeding</subject><subject>Plant Genetics and Genomics</subject><subject>Plant growth</subject><subject>Plant Pathology</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Polymorphism</subject><subject>Progeny</subject><subject>Quantitative trait loci</subject><subject>Seedlings</subject><subject>Single-nucleotide polymorphism</subject><subject>Verticillium</subject><subject>Verticillium wilt</subject><subject>wilting</subject><issn>1380-3743</issn><issn>1572-9788</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp9UUtrFTEUHkTBtvoDXBlw0820eU0eSymtFgql6HUbMpnMJSU3GZOM0rV_3HMZodCFEJLD-R45ydd1Hwi-IBjLy0oIZrTHhPVaK9nrV90JGSTttVTqNdRM4Z5Jzt52p7U-YtBoIU66Pw-rTS0028Ivj1qxoaGY3VqRTTY-1VBRntEPX1pwIcawHtDvEBsqHqBmk_MoJODC3kreQ7v6CVCXD2NIYA3AWKC15GWNcEtOR8PdEm2akMut5fSuezPbWP37f-dZt7u5_n71tb-7_3J79fmud5yzBtMr5gTRE8ecDwyPRBHL2KwmPlqNOR4FLMcEmUY-zFjhQY5OEioUnbSc2Fl3vvkuJf9cfW3mEKrzEUbxea2GDIQyhrUcgPrpBfUxrwV-pBpKBaaCMs6ARTaWK7nW4mezlHCw5ckQbI6xmC0WA7GYYyxGg4ZumgrctPfl2fl_oo-baLbZ2H0J1ey-UUw45CjgnZr9BZFWmos</recordid><startdate>20140301</startdate><enddate>20140301</enddate><creator>Fang, Hui</creator><creator>Zhou, Huiping</creator><creator>Sanogo, Soum</creator><creator>Lipka, Alexander E</creator><creator>Fang, David D</creator><creator>Percy, Richard G</creator><creator>Hughs, Sidney E</creator><creator>Jones, Don C</creator><creator>Gore, Michael A</creator><creator>Zhang, Jinfa</creator><general>Springer-Verlag</general><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>8FD</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20140301</creationdate><title>Quantitative trait locus analysis of Verticillium wilt resistance in an introgressed recombinant inbred population of Upland cotton</title><author>Fang, Hui ; Zhou, Huiping ; Sanogo, Soum ; Lipka, Alexander E ; Fang, David D ; Percy, Richard G ; Hughs, Sidney E ; Jones, Don C ; Gore, Michael A ; Zhang, Jinfa</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c443t-3783c619d4044530b181a33f8d4ba9040b60b6c361db45f08057bc712682d97d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Amplified fragment length polymorphism</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Breeding</topic><topic>breeding lines</topic><topic>chromosome mapping</topic><topic>Chromosomes</topic><topic>Cloning</topic><topic>Cotton</topic><topic>Cultivars</topic><topic>Dahlia</topic><topic>Disease control</topic><topic>Economic importance</topic><topic>fungi</topic><topic>Gene mapping</topic><topic>Gene polymorphism</topic><topic>genes</topic><topic>Genetic markers</topic><topic>Genomics</topic><topic>Gossypium barbadense</topic><topic>Gossypium hirsutum</topic><topic>greenhouse experimentation</topic><topic>Greenhouses</topic><topic>Heritability</topic><topic>hybrids</topic><topic>Inbreeding</topic><topic>Inoculation</topic><topic>Interspecific</topic><topic>introgression</topic><topic>leaves</topic><topic>Life Sciences</topic><topic>linkage groups</topic><topic>loci</topic><topic>Mapping</topic><topic>Markers</topic><topic>Molecular biology</topic><topic>Nucleotides</topic><topic>pathogens</topic><topic>Plant biology</topic><topic>Plant breeding</topic><topic>Plant Genetics and Genomics</topic><topic>Plant growth</topic><topic>Plant Pathology</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Polymorphism</topic><topic>Progeny</topic><topic>Quantitative trait loci</topic><topic>Seedlings</topic><topic>Single-nucleotide polymorphism</topic><topic>Verticillium</topic><topic>Verticillium wilt</topic><topic>wilting</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fang, Hui</creatorcontrib><creatorcontrib>Zhou, Huiping</creatorcontrib><creatorcontrib>Sanogo, Soum</creatorcontrib><creatorcontrib>Lipka, Alexander E</creatorcontrib><creatorcontrib>Fang, David D</creatorcontrib><creatorcontrib>Percy, Richard G</creatorcontrib><creatorcontrib>Hughs, Sidney E</creatorcontrib><creatorcontrib>Jones, Don C</creatorcontrib><creatorcontrib>Gore, Michael A</creatorcontrib><creatorcontrib>Zhang, Jinfa</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest One 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Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Molecular breeding</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fang, Hui</au><au>Zhou, Huiping</au><au>Sanogo, Soum</au><au>Lipka, Alexander E</au><au>Fang, David D</au><au>Percy, Richard G</au><au>Hughs, Sidney E</au><au>Jones, Don C</au><au>Gore, Michael A</au><au>Zhang, Jinfa</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Quantitative trait locus analysis of Verticillium wilt resistance in an introgressed recombinant inbred population of Upland cotton</atitle><jtitle>Molecular breeding</jtitle><stitle>Mol Breeding</stitle><date>2014-03-01</date><risdate>2014</risdate><volume>33</volume><issue>3</issue><spage>709</spage><epage>720</epage><pages>709-720</pages><issn>1380-3743</issn><eissn>1572-9788</eissn><abstract>Verticillium wilt (VW) of Upland cotton (Gossypium hirsutum L.) is caused by the soil-borne fungal pathogen Verticillium dahlia Kleb. The availability of VW-resistant cultivars is vital for control of this economically important disease, but there is a paucity of Upland cotton breeding lines and cultivars with a high level of resistance to VW. In general, G. barbadense L. (source of Pima cotton) is more VW-resistant than Upland cotton. However, the transfer of VW resistance from G. barbadense to Upland cotton is challenging because of hybrid breakdown in the F2 and successive generations of interspecific populations. We conducted two replicated greenhouse studies (tests 1 and 2) to assess the heritability of VW resistance to a defoliating V. dahliae isolate and identify genetic markers associated with VW resistance in an Upland cotton recombinant inbred mapping population that has stable introgression from Pima cotton. Disease ratings at the seedling stage on several different days after the first inoculation (DAI) in test 1, as well as the percentages of infected and defoliated leaves at 2 DAI in test 2, were found to be low to moderately heritable, indicating the importance of a replicated progeny test in selection for VW resistance. With a newly constructed linkage map consisting of 882 simple sequence repeat, single nucleotide polymorphism, and resistance gene analog–amplified fragment length polymorphism marker loci, we identified a total of 21 quantitative trait loci (QTLs) on 11 chromosomes and two linkage groups associated with VW resistance at several different DAIs in greenhouse tests 1 and 2. The markers associated with the VW resistance QTLs will facilitate fine mapping and cloning of VW resistance genes and genomics-assisted breeding for VW-resistant cultivars.</abstract><cop>Dordrecht</cop><pub>Springer-Verlag</pub><doi>10.1007/s11032-013-9987-9</doi><tpages>12</tpages></addata></record> |
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| source | Springer Nature - Complete Springer Journals |
| subjects | Amplified fragment length polymorphism Biomedical and Life Sciences Biotechnology Breeding breeding lines chromosome mapping Chromosomes Cloning Cotton Cultivars Dahlia Disease control Economic importance fungi Gene mapping Gene polymorphism genes Genetic markers Genomics Gossypium barbadense Gossypium hirsutum greenhouse experimentation Greenhouses Heritability hybrids Inbreeding Inoculation Interspecific introgression leaves Life Sciences linkage groups loci Mapping Markers Molecular biology Nucleotides pathogens Plant biology Plant breeding Plant Genetics and Genomics Plant growth Plant Pathology Plant Physiology Plant Sciences Polymorphism Progeny Quantitative trait loci Seedlings Single-nucleotide polymorphism Verticillium Verticillium wilt wilting |
| title | Quantitative trait locus analysis of Verticillium wilt resistance in an introgressed recombinant inbred population of Upland cotton |
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