Diversity of the Luciferin Binding Protein Gene in Bioluminescent Dinoflagellates - Insights from a New Gene in Noctiluca scintillans and Sequences from Gonyaulacoid Genera
Dinoflagellate bioluminescence systems operate with or without a luciferin binding protein, representing two distinct modes of light production. However, the distribution, diversity, and evolution of the luciferin binding protein gene within bioluminescent dinoflagellates are not well known. We used...
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Veröffentlicht in: | The Journal of eukaryotic microbiology 2014-03, Vol.61 (2), p.134-145 |
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description | Dinoflagellate bioluminescence systems operate with or without a luciferin binding protein, representing two distinct modes of light production. However, the distribution, diversity, and evolution of the luciferin binding protein gene within bioluminescent dinoflagellates are not well known. We used PCR to detect and partially sequence this gene from the heterotrophic dinoflagellate Noctiluca scintillans and a group of ecologically important gonyaulacoid species. We report an additional luciferin binding protein gene in N. scintillans which is not attached to luciferase, further to its typical combined bioluminescence gene. This supports the hypothesis that a profound re‐organization of the bioluminescence system has taken place in this organism. We also show that the luciferin binding protein gene is present in the genera Ceratocorys, Gonyaulax, and Protoceratium, and is prevalent in bioluminescent species of Alexandrium. Therefore, this gene is an integral component of the standard molecular bioluminescence machinery in dinoflagellates. Nucleotide sequences showed high within‐strain variation among gene copies, revealing a highly diverse gene family comprising multiple gene types in some organisms. Phylogenetic analyses showed that, in some species, the evolution of the luciferin binding protein gene was different from the organism's general phylogenies, highlighting the complex evolutionary history of dinoflagellate bioluminescence systems. |
doi_str_mv | 10.1111/jeu.12091 |
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However, the distribution, diversity, and evolution of the luciferin binding protein gene within bioluminescent dinoflagellates are not well known. We used PCR to detect and partially sequence this gene from the heterotrophic dinoflagellate Noctiluca scintillans and a group of ecologically important gonyaulacoid species. We report an additional luciferin binding protein gene in N. scintillans which is not attached to luciferase, further to its typical combined bioluminescence gene. This supports the hypothesis that a profound re‐organization of the bioluminescence system has taken place in this organism. We also show that the luciferin binding protein gene is present in the genera Ceratocorys, Gonyaulax, and Protoceratium, and is prevalent in bioluminescent species of Alexandrium. Therefore, this gene is an integral component of the standard molecular bioluminescence machinery in dinoflagellates. Nucleotide sequences showed high within‐strain variation among gene copies, revealing a highly diverse gene family comprising multiple gene types in some organisms. Phylogenetic analyses showed that, in some species, the evolution of the luciferin binding protein gene was different from the organism's general phylogenies, highlighting the complex evolutionary history of dinoflagellate bioluminescence systems.</description><identifier>ISSN: 1066-5234</identifier><identifier>EISSN: 1550-7408</identifier><identifier>DOI: 10.1111/jeu.12091</identifier><identifier>PMID: 24373055</identifier><language>eng</language><publisher>United States: Blackwell Publishing Ltd</publisher><subject>Amino Acid Sequence ; Bioluminescence ; Calcium-Binding Proteins - genetics ; Cluster Analysis ; Dinoflagellida - genetics ; DNA, Protozoan - chemistry ; DNA, Protozoan - genetics ; gene evolution ; Gene Order ; Genetic Variation ; luciferase ; Molecular Sequence Data ; Multigene Family ; PCR ; Phylogeny ; Polymerase Chain Reaction ; Protozoan Proteins - genetics ; Sequence Analysis, DNA ; Sequence Homology, Amino Acid</subject><ispartof>The Journal of eukaryotic microbiology, 2014-03, Vol.61 (2), p.134-145</ispartof><rights>2013 The Author(s) Journal of Eukaryotic Microbiology © 2013 International Society of Protistologists</rights><rights>2013 The Author(s) Journal of Eukaryotic Microbiology © 2013 International Society of Protistologists.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3981-3c0f0fc585f23793e1e159aeb12c1716fc471bf992303987eb0383a02ef67eff3</citedby><cites>FETCH-LOGICAL-c3981-3c0f0fc585f23793e1e159aeb12c1716fc471bf992303987eb0383a02ef67eff3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fjeu.12091$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fjeu.12091$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24373055$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Valiadi, Martha</creatorcontrib><creatorcontrib>Iglesias-Rodriguez, Maria Debora</creatorcontrib><title>Diversity of the Luciferin Binding Protein Gene in Bioluminescent Dinoflagellates - Insights from a New Gene in Noctiluca scintillans and Sequences from Gonyaulacoid Genera</title><title>The Journal of eukaryotic microbiology</title><addtitle>J. Eukaryot. Microbiol</addtitle><description>Dinoflagellate bioluminescence systems operate with or without a luciferin binding protein, representing two distinct modes of light production. However, the distribution, diversity, and evolution of the luciferin binding protein gene within bioluminescent dinoflagellates are not well known. We used PCR to detect and partially sequence this gene from the heterotrophic dinoflagellate Noctiluca scintillans and a group of ecologically important gonyaulacoid species. We report an additional luciferin binding protein gene in N. scintillans which is not attached to luciferase, further to its typical combined bioluminescence gene. This supports the hypothesis that a profound re‐organization of the bioluminescence system has taken place in this organism. We also show that the luciferin binding protein gene is present in the genera Ceratocorys, Gonyaulax, and Protoceratium, and is prevalent in bioluminescent species of Alexandrium. Therefore, this gene is an integral component of the standard molecular bioluminescence machinery in dinoflagellates. Nucleotide sequences showed high within‐strain variation among gene copies, revealing a highly diverse gene family comprising multiple gene types in some organisms. Phylogenetic analyses showed that, in some species, the evolution of the luciferin binding protein gene was different from the organism's general phylogenies, highlighting the complex evolutionary history of dinoflagellate bioluminescence systems.</description><subject>Amino Acid Sequence</subject><subject>Bioluminescence</subject><subject>Calcium-Binding Proteins - genetics</subject><subject>Cluster Analysis</subject><subject>Dinoflagellida - genetics</subject><subject>DNA, Protozoan - chemistry</subject><subject>DNA, Protozoan - genetics</subject><subject>gene evolution</subject><subject>Gene Order</subject><subject>Genetic Variation</subject><subject>luciferase</subject><subject>Molecular Sequence Data</subject><subject>Multigene Family</subject><subject>PCR</subject><subject>Phylogeny</subject><subject>Polymerase Chain Reaction</subject><subject>Protozoan Proteins - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology, Amino Acid</subject><issn>1066-5234</issn><issn>1550-7408</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kctuEzEUhi0EoqWw4AWQl7CY1pfxeGZJb6EoClRt1aXlOMepy4xdbE9L3omHxE3S7PDGF33fr2P9CH2k5JCWdXQP4yFlpKOv0D4VglSyJu3rciZNUwnG6z30LqV7QmjDKH2L9ljNJSdC7KO_p-4RYnJ5hYPF-Q7wdDTOQnQeHzu_cH6Jf8aQodwn4AGv30M_Ds5DMuAzPnU-2F4voe91hoQrfOGTW97lhG0MA9Z4Bk87eRZMdv1oNE7G-XLstU9Y-wW-gt8jeANbbRL8So-9NsEt1nbU79Ebq_sEH7b7Abo5P7s--VZNf0wuTr5OK8O7llbcEEusEa2wjMuOAwUqOg1zygyVtLGmlnRuu45xUgQJc8JbrgkD20iwlh-gz5vchxjKTCmrwZW_Po8KYUyKCtLWTNKWFPTLBjUxpBTBqofoBh1XihL1XI4q5ah1OYX9tI0d5wMsduRLGwU42gBProfV_5PU97Obl8hqY7iU4c_O0PGXaiSXQt3OJupYXt9eElkrwv8B3O2qDQ</recordid><startdate>201403</startdate><enddate>201403</enddate><creator>Valiadi, Martha</creator><creator>Iglesias-Rodriguez, Maria Debora</creator><general>Blackwell Publishing Ltd</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>201403</creationdate><title>Diversity of the Luciferin Binding Protein Gene in Bioluminescent Dinoflagellates - Insights from a New Gene in Noctiluca scintillans and Sequences from Gonyaulacoid Genera</title><author>Valiadi, Martha ; Iglesias-Rodriguez, Maria Debora</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3981-3c0f0fc585f23793e1e159aeb12c1716fc471bf992303987eb0383a02ef67eff3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Amino Acid Sequence</topic><topic>Bioluminescence</topic><topic>Calcium-Binding Proteins - genetics</topic><topic>Cluster Analysis</topic><topic>Dinoflagellida - genetics</topic><topic>DNA, Protozoan - chemistry</topic><topic>DNA, Protozoan - genetics</topic><topic>gene evolution</topic><topic>Gene Order</topic><topic>Genetic Variation</topic><topic>luciferase</topic><topic>Molecular Sequence Data</topic><topic>Multigene Family</topic><topic>PCR</topic><topic>Phylogeny</topic><topic>Polymerase Chain Reaction</topic><topic>Protozoan Proteins - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Homology, Amino Acid</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Valiadi, Martha</creatorcontrib><creatorcontrib>Iglesias-Rodriguez, Maria Debora</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>The Journal of eukaryotic microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Valiadi, Martha</au><au>Iglesias-Rodriguez, Maria Debora</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Diversity of the Luciferin Binding Protein Gene in Bioluminescent Dinoflagellates - Insights from a New Gene in Noctiluca scintillans and Sequences from Gonyaulacoid Genera</atitle><jtitle>The Journal of eukaryotic microbiology</jtitle><addtitle>J. Eukaryot. Microbiol</addtitle><date>2014-03</date><risdate>2014</risdate><volume>61</volume><issue>2</issue><spage>134</spage><epage>145</epage><pages>134-145</pages><issn>1066-5234</issn><eissn>1550-7408</eissn><abstract>Dinoflagellate bioluminescence systems operate with or without a luciferin binding protein, representing two distinct modes of light production. However, the distribution, diversity, and evolution of the luciferin binding protein gene within bioluminescent dinoflagellates are not well known. We used PCR to detect and partially sequence this gene from the heterotrophic dinoflagellate Noctiluca scintillans and a group of ecologically important gonyaulacoid species. We report an additional luciferin binding protein gene in N. scintillans which is not attached to luciferase, further to its typical combined bioluminescence gene. This supports the hypothesis that a profound re‐organization of the bioluminescence system has taken place in this organism. We also show that the luciferin binding protein gene is present in the genera Ceratocorys, Gonyaulax, and Protoceratium, and is prevalent in bioluminescent species of Alexandrium. Therefore, this gene is an integral component of the standard molecular bioluminescence machinery in dinoflagellates. Nucleotide sequences showed high within‐strain variation among gene copies, revealing a highly diverse gene family comprising multiple gene types in some organisms. Phylogenetic analyses showed that, in some species, the evolution of the luciferin binding protein gene was different from the organism's general phylogenies, highlighting the complex evolutionary history of dinoflagellate bioluminescence systems.</abstract><cop>United States</cop><pub>Blackwell Publishing Ltd</pub><pmid>24373055</pmid><doi>10.1111/jeu.12091</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amino Acid Sequence Bioluminescence Calcium-Binding Proteins - genetics Cluster Analysis Dinoflagellida - genetics DNA, Protozoan - chemistry DNA, Protozoan - genetics gene evolution Gene Order Genetic Variation luciferase Molecular Sequence Data Multigene Family PCR Phylogeny Polymerase Chain Reaction Protozoan Proteins - genetics Sequence Analysis, DNA Sequence Homology, Amino Acid |
title | Diversity of the Luciferin Binding Protein Gene in Bioluminescent Dinoflagellates - Insights from a New Gene in Noctiluca scintillans and Sequences from Gonyaulacoid Genera |
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