Ontogenetic variation in epibiont community structure in the deep‐sea yeti crab, Kiwa puravida: convergence among crustaceans
Recent investigations have demonstrated that unusually ‘hairy’ yeti crabs within the family Kiwaidae associate with two predominant filamentous bacterial families, the Epsilon and Gammaproteobacteria. These analyses, however, were based on samples collected from a single body region, the setae of pe...
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Veröffentlicht in: | Molecular ecology 2014-03, Vol.23 (6), p.1457-1472 |
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description | Recent investigations have demonstrated that unusually ‘hairy’ yeti crabs within the family Kiwaidae associate with two predominant filamentous bacterial families, the Epsilon and Gammaproteobacteria. These analyses, however, were based on samples collected from a single body region, the setae of pereopods. To more thoroughly investigate the microbiome associated with Kiwa puravida, a yeti crab species from Costa Rica, we utilized barcoded 16S rRNA amplicon pyrosequencing, as well as microscopy and terminal restriction fragment length polymorphism analysis. Results indicate that, indeed, the bacterial community on the pereopods is far less diverse than on the rest of the body (Shannon indices ranged from 1.30–2.02 and 2.22–2.66, respectively). Similarly, the bacterial communities associated with juveniles and adults were more complex than previously recognized, with as many as 46 bacterial families represented. Ontogenetic differences in the microbial community, from egg to juvenile to adult, included a dramatic under‐representation of the Helicobacteraceae and higher abundances of both Thiotrichaceae and Methylococcaceae for the eggs, which paralleled patterns observed in another bacteria–crustacean symbiosis. The degree to which abiotic and biotic feedbacks influence the bacterial community on the crabs is still not known, but predictions suggest that both the local environment and host‐derived factors influence the establishment and maintenance of microbes associated with the surfaces of aquatic animals. |
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These analyses, however, were based on samples collected from a single body region, the setae of pereopods. To more thoroughly investigate the microbiome associated with Kiwa puravida, a yeti crab species from Costa Rica, we utilized barcoded 16S rRNA amplicon pyrosequencing, as well as microscopy and terminal restriction fragment length polymorphism analysis. Results indicate that, indeed, the bacterial community on the pereopods is far less diverse than on the rest of the body (Shannon indices ranged from 1.30–2.02 and 2.22–2.66, respectively). Similarly, the bacterial communities associated with juveniles and adults were more complex than previously recognized, with as many as 46 bacterial families represented. Ontogenetic differences in the microbial community, from egg to juvenile to adult, included a dramatic under‐representation of the Helicobacteraceae and higher abundances of both Thiotrichaceae and Methylococcaceae for the eggs, which paralleled patterns observed in another bacteria–crustacean symbiosis. The degree to which abiotic and biotic feedbacks influence the bacterial community on the crabs is still not known, but predictions suggest that both the local environment and host‐derived factors influence the establishment and maintenance of microbes associated with the surfaces of aquatic animals.</description><identifier>ISSN: 0962-1083</identifier><identifier>EISSN: 1365-294X</identifier><identifier>DOI: 10.1111/mec.12439</identifier><identifier>PMID: 23952239</identifier><language>eng</language><publisher>England: Blackwell Publishing Ltd</publisher><subject>adults ; Animals ; Anomura - microbiology ; Bacteria ; Bacteria - classification ; Bacteria - genetics ; bacterial communities ; community structure ; Costa Rica ; crab ; crabs ; Crustacea ; Crustaceans ; deep-sea ; DNA Barcoding, Taxonomic ; eggs ; epibiont ; Female ; Genetic diversity ; Helicobacteraceae ; In Situ Hybridization, Fluorescence ; juveniles ; Kiwa ; Marine biology ; Methylococcaceae ; Microbiology ; Microbiota ; microorganisms ; microscopy ; Microscopy, Electron, Transmission ; Ovum - microbiology ; Phylogeny ; Polymorphism ; Polymorphism, Restriction Fragment Length ; restriction fragment length polymorphism ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; sequence analysis ; Sequence Analysis, DNA ; Symbiosis ; Thiotrichaceae</subject><ispartof>Molecular ecology, 2014-03, Vol.23 (6), p.1457-1472</ispartof><rights>2013 John Wiley & Sons Ltd</rights><rights>2013 John Wiley & Sons Ltd.</rights><rights>Copyright © 2014 John Wiley & Sons Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4819-946f2b76b8cebe449c6b9c717624eb3127ac9326043681b0adee4190c356c43b3</citedby><cites>FETCH-LOGICAL-c4819-946f2b76b8cebe449c6b9c717624eb3127ac9326043681b0adee4190c356c43b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fmec.12439$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fmec.12439$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,777,781,1412,27905,27906,45555,45556</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23952239$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Goffredi, Shana K</creatorcontrib><creatorcontrib>Gregory, Ann</creatorcontrib><creatorcontrib>Jones, William J</creatorcontrib><creatorcontrib>Morella, Norma M</creatorcontrib><creatorcontrib>Sakamoto, Reid I</creatorcontrib><title>Ontogenetic variation in epibiont community structure in the deep‐sea yeti crab, Kiwa puravida: convergence among crustaceans</title><title>Molecular ecology</title><addtitle>Mol Ecol</addtitle><description>Recent investigations have demonstrated that unusually ‘hairy’ yeti crabs within the family Kiwaidae associate with two predominant filamentous bacterial families, the Epsilon and Gammaproteobacteria. These analyses, however, were based on samples collected from a single body region, the setae of pereopods. To more thoroughly investigate the microbiome associated with Kiwa puravida, a yeti crab species from Costa Rica, we utilized barcoded 16S rRNA amplicon pyrosequencing, as well as microscopy and terminal restriction fragment length polymorphism analysis. Results indicate that, indeed, the bacterial community on the pereopods is far less diverse than on the rest of the body (Shannon indices ranged from 1.30–2.02 and 2.22–2.66, respectively). Similarly, the bacterial communities associated with juveniles and adults were more complex than previously recognized, with as many as 46 bacterial families represented. Ontogenetic differences in the microbial community, from egg to juvenile to adult, included a dramatic under‐representation of the Helicobacteraceae and higher abundances of both Thiotrichaceae and Methylococcaceae for the eggs, which paralleled patterns observed in another bacteria–crustacean symbiosis. The degree to which abiotic and biotic feedbacks influence the bacterial community on the crabs is still not known, but predictions suggest that both the local environment and host‐derived factors influence the establishment and maintenance of microbes associated with the surfaces of aquatic animals.</description><subject>adults</subject><subject>Animals</subject><subject>Anomura - microbiology</subject><subject>Bacteria</subject><subject>Bacteria - classification</subject><subject>Bacteria - genetics</subject><subject>bacterial communities</subject><subject>community structure</subject><subject>Costa Rica</subject><subject>crab</subject><subject>crabs</subject><subject>Crustacea</subject><subject>Crustaceans</subject><subject>deep-sea</subject><subject>DNA Barcoding, Taxonomic</subject><subject>eggs</subject><subject>epibiont</subject><subject>Female</subject><subject>Genetic diversity</subject><subject>Helicobacteraceae</subject><subject>In Situ Hybridization, Fluorescence</subject><subject>juveniles</subject><subject>Kiwa</subject><subject>Marine biology</subject><subject>Methylococcaceae</subject><subject>Microbiology</subject><subject>Microbiota</subject><subject>microorganisms</subject><subject>microscopy</subject><subject>Microscopy, Electron, Transmission</subject><subject>Ovum - microbiology</subject><subject>Phylogeny</subject><subject>Polymorphism</subject><subject>Polymorphism, Restriction Fragment Length</subject><subject>restriction fragment length polymorphism</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>sequence analysis</subject><subject>Sequence Analysis, DNA</subject><subject>Symbiosis</subject><subject>Thiotrichaceae</subject><issn>0962-1083</issn><issn>1365-294X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kc1uEzEURi0EoqGw4AXAEhuQmNZ_4xmzQ1EJ0EIXpcDOsp2b4JLxDLYnJSt4BJ6RJ8EhbRdIeGFb8vmOr_Qh9JCSA1rWYQfugDLB1S00oVzWFVPi8200IUqyipKW76F7KV0QQjmr67toj3FVs7JN0I_TkPslBMje4bWJ3mTfB-wDhsHbcs3Y9V03Bp83OOU4ujxG2L7nL4DnAMPvn78SGLwpBuyisc_xsb80eBijWfu5eVHyYQ2x_OEAm64Py4KNKRsHJqT76M7CrBI8uDr30fmrow_T19XJ6ezN9OVJ5URLVaWEXDDbSNs6sCCEctIq19BGMgGWU9YYpziTRHDZUktMmUxQRRyvpRPc8n30dOcdYv9thJR155OD1coE6MekaU1awbhUqqBP_kEv-jGGMt2WahpJhWKFerajXOxTirDQQ_SdiRtNid62oksr-m8rhX10ZRxtB_Mb8rqGAhzugEu_gs3_Tfrd0fRaWe0SPmX4fpMw8auWDW9q_en9TJ9xNZt-VG_1ceEf7_iF6bVZRp_0-RkjVBBC2pYTzv8AiGewbg</recordid><startdate>201403</startdate><enddate>201403</enddate><creator>Goffredi, Shana K</creator><creator>Gregory, Ann</creator><creator>Jones, William J</creator><creator>Morella, Norma M</creator><creator>Sakamoto, Reid I</creator><general>Blackwell Publishing Ltd</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7SS</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201403</creationdate><title>Ontogenetic variation in epibiont community structure in the deep‐sea yeti crab, Kiwa puravida: convergence among crustaceans</title><author>Goffredi, Shana K ; Gregory, Ann ; Jones, William J ; Morella, Norma M ; Sakamoto, Reid I</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4819-946f2b76b8cebe449c6b9c717624eb3127ac9326043681b0adee4190c356c43b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>adults</topic><topic>Animals</topic><topic>Anomura - microbiology</topic><topic>Bacteria</topic><topic>Bacteria - classification</topic><topic>Bacteria - genetics</topic><topic>bacterial communities</topic><topic>community structure</topic><topic>Costa Rica</topic><topic>crab</topic><topic>crabs</topic><topic>Crustacea</topic><topic>Crustaceans</topic><topic>deep-sea</topic><topic>DNA Barcoding, Taxonomic</topic><topic>eggs</topic><topic>epibiont</topic><topic>Female</topic><topic>Genetic diversity</topic><topic>Helicobacteraceae</topic><topic>In Situ Hybridization, Fluorescence</topic><topic>juveniles</topic><topic>Kiwa</topic><topic>Marine biology</topic><topic>Methylococcaceae</topic><topic>Microbiology</topic><topic>Microbiota</topic><topic>microorganisms</topic><topic>microscopy</topic><topic>Microscopy, Electron, Transmission</topic><topic>Ovum - microbiology</topic><topic>Phylogeny</topic><topic>Polymorphism</topic><topic>Polymorphism, Restriction Fragment Length</topic><topic>restriction fragment length polymorphism</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>sequence analysis</topic><topic>Sequence Analysis, DNA</topic><topic>Symbiosis</topic><topic>Thiotrichaceae</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Goffredi, Shana K</creatorcontrib><creatorcontrib>Gregory, Ann</creatorcontrib><creatorcontrib>Jones, William J</creatorcontrib><creatorcontrib>Morella, Norma M</creatorcontrib><creatorcontrib>Sakamoto, Reid I</creatorcontrib><collection>AGRIS</collection><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Molecular ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Goffredi, Shana K</au><au>Gregory, Ann</au><au>Jones, William J</au><au>Morella, Norma M</au><au>Sakamoto, Reid I</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Ontogenetic variation in epibiont community structure in the deep‐sea yeti crab, Kiwa puravida: convergence among crustaceans</atitle><jtitle>Molecular ecology</jtitle><addtitle>Mol Ecol</addtitle><date>2014-03</date><risdate>2014</risdate><volume>23</volume><issue>6</issue><spage>1457</spage><epage>1472</epage><pages>1457-1472</pages><issn>0962-1083</issn><eissn>1365-294X</eissn><abstract>Recent investigations have demonstrated that unusually ‘hairy’ yeti crabs within the family Kiwaidae associate with two predominant filamentous bacterial families, the Epsilon and Gammaproteobacteria. These analyses, however, were based on samples collected from a single body region, the setae of pereopods. To more thoroughly investigate the microbiome associated with Kiwa puravida, a yeti crab species from Costa Rica, we utilized barcoded 16S rRNA amplicon pyrosequencing, as well as microscopy and terminal restriction fragment length polymorphism analysis. Results indicate that, indeed, the bacterial community on the pereopods is far less diverse than on the rest of the body (Shannon indices ranged from 1.30–2.02 and 2.22–2.66, respectively). Similarly, the bacterial communities associated with juveniles and adults were more complex than previously recognized, with as many as 46 bacterial families represented. Ontogenetic differences in the microbial community, from egg to juvenile to adult, included a dramatic under‐representation of the Helicobacteraceae and higher abundances of both Thiotrichaceae and Methylococcaceae for the eggs, which paralleled patterns observed in another bacteria–crustacean symbiosis. The degree to which abiotic and biotic feedbacks influence the bacterial community on the crabs is still not known, but predictions suggest that both the local environment and host‐derived factors influence the establishment and maintenance of microbes associated with the surfaces of aquatic animals.</abstract><cop>England</cop><pub>Blackwell Publishing Ltd</pub><pmid>23952239</pmid><doi>10.1111/mec.12439</doi><tpages>16</tpages></addata></record> |
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subjects | adults Animals Anomura - microbiology Bacteria Bacteria - classification Bacteria - genetics bacterial communities community structure Costa Rica crab crabs Crustacea Crustaceans deep-sea DNA Barcoding, Taxonomic eggs epibiont Female Genetic diversity Helicobacteraceae In Situ Hybridization, Fluorescence juveniles Kiwa Marine biology Methylococcaceae Microbiology Microbiota microorganisms microscopy Microscopy, Electron, Transmission Ovum - microbiology Phylogeny Polymorphism Polymorphism, Restriction Fragment Length restriction fragment length polymorphism ribosomal RNA RNA, Ribosomal, 16S - genetics sequence analysis Sequence Analysis, DNA Symbiosis Thiotrichaceae |
title | Ontogenetic variation in epibiont community structure in the deep‐sea yeti crab, Kiwa puravida: convergence among crustaceans |
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