Statistical shape model of a liver for autopsy imaging
Purpose Modeling the postmortem liver for autopsy imaging is a challenging problem owing to the variation in organ deformation found in cadavers and limited availability of postmortem liver CT scans. An algorithm was developed to construct a statistical shape model (SSM) for the adult postmortem...
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Veröffentlicht in: | International journal for computer assisted radiology and surgery 2014-03, Vol.9 (2), p.269-281 |
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creator | Saito, Atsushi Shimizu, Akinobu Watanabe, Hidefumi Yamamoto, Seiji Nawano, Shigeru Kobatake, Hidefumi |
description | Purpose
Modeling the postmortem liver for autopsy imaging is a challenging problem owing to the variation in organ deformation found in cadavers and limited availability of postmortem liver CT scans. An algorithm was developed to construct a statistical shape model (SSM) for the adult postmortem liver in autopsy imaging.
Methods
First, we investigated the relationship between SSMs obtained from in vivo liver CT scans and those from postmortem cases. Liver shapes were embedded in level set functions and statistically modeled using a spatially weighted principal components analysis. The performance of the SSMs was evaluated in terms of generalization and specificity. Several algorithms for the transformation from in vivo livers to postmortem livers were proposed to enhance the performance of an SSM for a postmortem liver, followed by a comparative study on SSMs. Specifically, five SSMs for a postmortem liver were constructed and evaluated using 32 postmortem liver labels, and postmortem liver labels synthesized from 144 in vivo liver labels were constructed using the proposed transformation algorithms. We also compared the proposed SSMs with three conventional SSMs trained from postmortem liver labels and/or in vivo liver labels.
Results
The investigation showed that the performance of an SSM constructed using in vivo liver labels suffered when describing postmortem liver shapes. Two of the five proposed SSMs trained using synthesized postmortem livers showed the best performance with no significant differences between them, and they statistically outperformed all conventional SSMs tested.
Conclusions
The performance of conventional SSMs can be improved by using both postmortem liver shape labels and artificial shape labels synthesized from in vivo liver shape labels. |
doi_str_mv | 10.1007/s11548-013-0923-6 |
format | Article |
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Modeling the postmortem liver for autopsy imaging is a challenging problem owing to the variation in organ deformation found in cadavers and limited availability of postmortem liver CT scans. An algorithm was developed to construct a statistical shape model (SSM) for the adult postmortem liver in autopsy imaging.
Methods
First, we investigated the relationship between SSMs obtained from in vivo liver CT scans and those from postmortem cases. Liver shapes were embedded in level set functions and statistically modeled using a spatially weighted principal components analysis. The performance of the SSMs was evaluated in terms of generalization and specificity. Several algorithms for the transformation from in vivo livers to postmortem livers were proposed to enhance the performance of an SSM for a postmortem liver, followed by a comparative study on SSMs. Specifically, five SSMs for a postmortem liver were constructed and evaluated using 32 postmortem liver labels, and postmortem liver labels synthesized from 144 in vivo liver labels were constructed using the proposed transformation algorithms. We also compared the proposed SSMs with three conventional SSMs trained from postmortem liver labels and/or in vivo liver labels.
Results
The investigation showed that the performance of an SSM constructed using in vivo liver labels suffered when describing postmortem liver shapes. Two of the five proposed SSMs trained using synthesized postmortem livers showed the best performance with no significant differences between them, and they statistically outperformed all conventional SSMs tested.
Conclusions
The performance of conventional SSMs can be improved by using both postmortem liver shape labels and artificial shape labels synthesized from in vivo liver shape labels.</description><identifier>ISSN: 1861-6410</identifier><identifier>EISSN: 1861-6429</identifier><identifier>DOI: 10.1007/s11548-013-0923-6</identifier><identifier>PMID: 23877279</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Adult ; Algorithms ; Autopsy ; Computer Imaging ; Computer Science ; Health Informatics ; Humans ; Imaging ; Imaging, Three-Dimensional - methods ; Liver - diagnostic imaging ; Medicine ; Medicine & Public Health ; Models, Statistical ; Original Article ; Pattern Recognition and Graphics ; Principal Component Analysis ; Radiology ; Reproducibility of Results ; Surgery ; Tomography, X-Ray Computed - methods ; Vision</subject><ispartof>International journal for computer assisted radiology and surgery, 2014-03, Vol.9 (2), p.269-281</ispartof><rights>CARS 2013</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c344t-f96544a7a507d2a3ed75542088437ea28216bacad3b749998eeba31f06b1db743</citedby><cites>FETCH-LOGICAL-c344t-f96544a7a507d2a3ed75542088437ea28216bacad3b749998eeba31f06b1db743</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11548-013-0923-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11548-013-0923-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23877279$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Saito, Atsushi</creatorcontrib><creatorcontrib>Shimizu, Akinobu</creatorcontrib><creatorcontrib>Watanabe, Hidefumi</creatorcontrib><creatorcontrib>Yamamoto, Seiji</creatorcontrib><creatorcontrib>Nawano, Shigeru</creatorcontrib><creatorcontrib>Kobatake, Hidefumi</creatorcontrib><title>Statistical shape model of a liver for autopsy imaging</title><title>International journal for computer assisted radiology and surgery</title><addtitle>Int J CARS</addtitle><addtitle>Int J Comput Assist Radiol Surg</addtitle><description>Purpose
Modeling the postmortem liver for autopsy imaging is a challenging problem owing to the variation in organ deformation found in cadavers and limited availability of postmortem liver CT scans. An algorithm was developed to construct a statistical shape model (SSM) for the adult postmortem liver in autopsy imaging.
Methods
First, we investigated the relationship between SSMs obtained from in vivo liver CT scans and those from postmortem cases. Liver shapes were embedded in level set functions and statistically modeled using a spatially weighted principal components analysis. The performance of the SSMs was evaluated in terms of generalization and specificity. Several algorithms for the transformation from in vivo livers to postmortem livers were proposed to enhance the performance of an SSM for a postmortem liver, followed by a comparative study on SSMs. Specifically, five SSMs for a postmortem liver were constructed and evaluated using 32 postmortem liver labels, and postmortem liver labels synthesized from 144 in vivo liver labels were constructed using the proposed transformation algorithms. We also compared the proposed SSMs with three conventional SSMs trained from postmortem liver labels and/or in vivo liver labels.
Results
The investigation showed that the performance of an SSM constructed using in vivo liver labels suffered when describing postmortem liver shapes. Two of the five proposed SSMs trained using synthesized postmortem livers showed the best performance with no significant differences between them, and they statistically outperformed all conventional SSMs tested.
Conclusions
The performance of conventional SSMs can be improved by using both postmortem liver shape labels and artificial shape labels synthesized from in vivo liver shape labels.</description><subject>Adult</subject><subject>Algorithms</subject><subject>Autopsy</subject><subject>Computer Imaging</subject><subject>Computer Science</subject><subject>Health Informatics</subject><subject>Humans</subject><subject>Imaging</subject><subject>Imaging, Three-Dimensional - methods</subject><subject>Liver - diagnostic imaging</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Models, Statistical</subject><subject>Original Article</subject><subject>Pattern Recognition and Graphics</subject><subject>Principal Component Analysis</subject><subject>Radiology</subject><subject>Reproducibility of Results</subject><subject>Surgery</subject><subject>Tomography, X-Ray Computed - methods</subject><subject>Vision</subject><issn>1861-6410</issn><issn>1861-6429</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kMtOwzAQRS0EoqXwAWyQl2wCHr-zRBUvqRILYG05iVNSJXGxE6T-Pa5SumQ1o5l7r2YOQtdA7oAQdR8BBNcZAZaRnLJMnqA5aAmZ5DQ_PfZAZugixg0hXCgmztGMMq0UVfkcyffBDk0cmtK2OH7ZrcOdr1yLfY0tbpsfF3DtA7bj4Ldxh5vOrpt-fYnOattGd3WoC_T59PixfMlWb8-vy4dVVjLOh6zOpeDcKiuIqqhlrlJCcEq05kw5SzUFWdjSVqxQPM9z7VxhGdREFlClEVug2yl3G_z36OJguiaWrm1t7_wYDQiiUx4HmqQwScvgYwyuNtuQrg07A8TscZkJl0m4zB6Xkclzc4gfi85VR8cfnySgkyCmVb92wWz8GPr08j-pv6LJc-A</recordid><startdate>20140301</startdate><enddate>20140301</enddate><creator>Saito, Atsushi</creator><creator>Shimizu, Akinobu</creator><creator>Watanabe, Hidefumi</creator><creator>Yamamoto, Seiji</creator><creator>Nawano, Shigeru</creator><creator>Kobatake, Hidefumi</creator><general>Springer Berlin Heidelberg</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20140301</creationdate><title>Statistical shape model of a liver for autopsy imaging</title><author>Saito, Atsushi ; Shimizu, Akinobu ; Watanabe, Hidefumi ; Yamamoto, Seiji ; Nawano, Shigeru ; Kobatake, Hidefumi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c344t-f96544a7a507d2a3ed75542088437ea28216bacad3b749998eeba31f06b1db743</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Adult</topic><topic>Algorithms</topic><topic>Autopsy</topic><topic>Computer Imaging</topic><topic>Computer Science</topic><topic>Health Informatics</topic><topic>Humans</topic><topic>Imaging</topic><topic>Imaging, Three-Dimensional - methods</topic><topic>Liver - diagnostic imaging</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>Models, Statistical</topic><topic>Original Article</topic><topic>Pattern Recognition and Graphics</topic><topic>Principal Component Analysis</topic><topic>Radiology</topic><topic>Reproducibility of Results</topic><topic>Surgery</topic><topic>Tomography, X-Ray Computed - methods</topic><topic>Vision</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Saito, Atsushi</creatorcontrib><creatorcontrib>Shimizu, Akinobu</creatorcontrib><creatorcontrib>Watanabe, Hidefumi</creatorcontrib><creatorcontrib>Yamamoto, Seiji</creatorcontrib><creatorcontrib>Nawano, Shigeru</creatorcontrib><creatorcontrib>Kobatake, Hidefumi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal for computer assisted radiology and surgery</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Saito, Atsushi</au><au>Shimizu, Akinobu</au><au>Watanabe, Hidefumi</au><au>Yamamoto, Seiji</au><au>Nawano, Shigeru</au><au>Kobatake, Hidefumi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Statistical shape model of a liver for autopsy imaging</atitle><jtitle>International journal for computer assisted radiology and surgery</jtitle><stitle>Int J CARS</stitle><addtitle>Int J Comput Assist Radiol Surg</addtitle><date>2014-03-01</date><risdate>2014</risdate><volume>9</volume><issue>2</issue><spage>269</spage><epage>281</epage><pages>269-281</pages><issn>1861-6410</issn><eissn>1861-6429</eissn><abstract>Purpose
Modeling the postmortem liver for autopsy imaging is a challenging problem owing to the variation in organ deformation found in cadavers and limited availability of postmortem liver CT scans. An algorithm was developed to construct a statistical shape model (SSM) for the adult postmortem liver in autopsy imaging.
Methods
First, we investigated the relationship between SSMs obtained from in vivo liver CT scans and those from postmortem cases. Liver shapes were embedded in level set functions and statistically modeled using a spatially weighted principal components analysis. The performance of the SSMs was evaluated in terms of generalization and specificity. Several algorithms for the transformation from in vivo livers to postmortem livers were proposed to enhance the performance of an SSM for a postmortem liver, followed by a comparative study on SSMs. Specifically, five SSMs for a postmortem liver were constructed and evaluated using 32 postmortem liver labels, and postmortem liver labels synthesized from 144 in vivo liver labels were constructed using the proposed transformation algorithms. We also compared the proposed SSMs with three conventional SSMs trained from postmortem liver labels and/or in vivo liver labels.
Results
The investigation showed that the performance of an SSM constructed using in vivo liver labels suffered when describing postmortem liver shapes. Two of the five proposed SSMs trained using synthesized postmortem livers showed the best performance with no significant differences between them, and they statistically outperformed all conventional SSMs tested.
Conclusions
The performance of conventional SSMs can be improved by using both postmortem liver shape labels and artificial shape labels synthesized from in vivo liver shape labels.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>23877279</pmid><doi>10.1007/s11548-013-0923-6</doi><tpages>13</tpages></addata></record> |
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subjects | Adult Algorithms Autopsy Computer Imaging Computer Science Health Informatics Humans Imaging Imaging, Three-Dimensional - methods Liver - diagnostic imaging Medicine Medicine & Public Health Models, Statistical Original Article Pattern Recognition and Graphics Principal Component Analysis Radiology Reproducibility of Results Surgery Tomography, X-Ray Computed - methods Vision |
title | Statistical shape model of a liver for autopsy imaging |
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