Clinical correlations of mutations affecting six components of the SWI/SNF complex: Detailed description of 21 patients and a review of the literature
Mutations in the components of the SWItch/sucrose nonfermentable (SWI/SNF)‐like chromatin remodeling complex have recently been reported to cause Coffin–Siris syndrome (CSS), Nicolaides–Baraitser syndrome (NCBRS), and ARID1B‐related intellectual disability (ID) syndrome. We detail here the genotype‐...
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creator | Kosho, Tomoki Okamoto, Nobuhiko Ohashi, Hirofumi Tsurusaki, Yoshinori Imai, Yoko Hibi-Ko, Yumiko Kawame, Hiroshi Homma, Tomomi Tanabe, Saori Kato, Mitsuhiro Hiraki, Yoko Yamagata, Takanori Yano, Shoji Sakazume, Satoru Ishii, Takuma Nagai, Toshiro Ohta, Tohru Niikawa, Norio Mizuno, Seiji Kaname, Tadashi Naritomi, Kenji Narumi, Yoko Wakui, Keiko Fukushima, Yoshimitsu Miyatake, Satoko Mizuguchi, Takeshi Saitsu, Hirotomo Miyake, Noriko Matsumoto, Naomichi |
description | Mutations in the components of the SWItch/sucrose nonfermentable (SWI/SNF)‐like chromatin remodeling complex have recently been reported to cause Coffin–Siris syndrome (CSS), Nicolaides–Baraitser syndrome (NCBRS), and ARID1B‐related intellectual disability (ID) syndrome. We detail here the genotype‐phenotype correlations for 85 previously published and one additional patient with mutations in the SWI/SNF complex: four with SMARCB1 mutations, seven with SMARCA4 mutations, 37 with SMARCA2 mutations, one with an SMARCE1 mutation, three with ARID1A mutations, and 33 with ARID1B mutations. The mutations were associated with syndromic ID and speech impairment (severe/profound in SMARCB1, SMARCE1, and ARID1A mutations; variable in SMARCA4, SMARCA2, and ARID1B mutations), which was frequently accompanied by agenesis or hypoplasia of the corpus callosum. SMARCB1 mutations caused “classical” CSS with typical facial “coarseness” and significant digital/nail hypoplasia. SMARCA4 mutations caused CSS without typical facial coarseness and with significant digital/nail hypoplasia. SMARCA2 mutations caused NCBRS, typically with short stature, sparse hair, a thin vermillion of the upper lip, an everted lower lip and prominent finger joints. A SMARCE1 mutation caused CSS without typical facial coarseness and with significant digital/nail hypoplasia. ARID1A mutations caused the most severe CSS with severe physical complications. ARID1B mutations caused CSS without typical facial coarseness and with mild digital/nail hypoplasia, or caused syndromic ID. Because of the common underlying mechanism and overlapping clinical features, we propose that these conditions be referred to collectively as “SWI/SNF‐related ID syndromes”. © 2013 Wiley Periodicals, Inc. |
doi_str_mv | 10.1002/ajmg.a.35933 |
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We detail here the genotype‐phenotype correlations for 85 previously published and one additional patient with mutations in the SWI/SNF complex: four with SMARCB1 mutations, seven with SMARCA4 mutations, 37 with SMARCA2 mutations, one with an SMARCE1 mutation, three with ARID1A mutations, and 33 with ARID1B mutations. The mutations were associated with syndromic ID and speech impairment (severe/profound in SMARCB1, SMARCE1, and ARID1A mutations; variable in SMARCA4, SMARCA2, and ARID1B mutations), which was frequently accompanied by agenesis or hypoplasia of the corpus callosum. SMARCB1 mutations caused “classical” CSS with typical facial “coarseness” and significant digital/nail hypoplasia. SMARCA4 mutations caused CSS without typical facial coarseness and with significant digital/nail hypoplasia. SMARCA2 mutations caused NCBRS, typically with short stature, sparse hair, a thin vermillion of the upper lip, an everted lower lip and prominent finger joints. A SMARCE1 mutation caused CSS without typical facial coarseness and with significant digital/nail hypoplasia. ARID1A mutations caused the most severe CSS with severe physical complications. ARID1B mutations caused CSS without typical facial coarseness and with mild digital/nail hypoplasia, or caused syndromic ID. Because of the common underlying mechanism and overlapping clinical features, we propose that these conditions be referred to collectively as “SWI/SNF‐related ID syndromes”. © 2013 Wiley Periodicals, Inc.</description><identifier>ISSN: 1552-4825</identifier><identifier>EISSN: 1552-4833</identifier><identifier>DOI: 10.1002/ajmg.a.35933</identifier><identifier>PMID: 23637025</identifier><language>eng</language><publisher>United States: Blackwell Publishing Ltd</publisher><subject>Abnormalities, Multiple - genetics ; ARID1A ; ARID1B ; Body height ; Chromatin Assembly and Disassembly - genetics ; Chromosomal Proteins, Non-Histone - genetics ; Coffin-Siris syndrome ; DNA Helicases - genetics ; DNA-Binding Proteins - genetics ; Face - abnormalities ; Facies ; Female ; Foot Deformities, Congenital - genetics ; Genetic Association Studies ; Hand Deformities, Congenital - genetics ; Humans ; Hypotrichosis - genetics ; intellectual disability (ID) ; Intellectual Disability - genetics ; Male ; Micrognathism - genetics ; Mutation ; Neck - abnormalities ; Nicolaides-Baraitser syndrome ; Nuclear Proteins - genetics ; SMARCA2 ; SMARCA4 ; SMARCB1 ; SMARCB1 Protein ; SMARCE1 ; SWI/SNF complex ; Syndrome ; Transcription Factors - genetics</subject><ispartof>American journal of medical genetics. Part A, 2013-06, Vol.161A (6), p.1221-1237</ispartof><rights>Copyright © 2013 Wiley Periodicals, Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5393-77c646858cc7e2c5a40953427d2e21368db72a217107148a1d4e637331e78b953</citedby><cites>FETCH-LOGICAL-c5393-77c646858cc7e2c5a40953427d2e21368db72a217107148a1d4e637331e78b953</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fajmg.a.35933$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fajmg.a.35933$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23637025$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kosho, Tomoki</creatorcontrib><creatorcontrib>Okamoto, Nobuhiko</creatorcontrib><creatorcontrib>Ohashi, Hirofumi</creatorcontrib><creatorcontrib>Tsurusaki, Yoshinori</creatorcontrib><creatorcontrib>Imai, Yoko</creatorcontrib><creatorcontrib>Hibi-Ko, Yumiko</creatorcontrib><creatorcontrib>Kawame, Hiroshi</creatorcontrib><creatorcontrib>Homma, Tomomi</creatorcontrib><creatorcontrib>Tanabe, Saori</creatorcontrib><creatorcontrib>Kato, Mitsuhiro</creatorcontrib><creatorcontrib>Hiraki, Yoko</creatorcontrib><creatorcontrib>Yamagata, Takanori</creatorcontrib><creatorcontrib>Yano, Shoji</creatorcontrib><creatorcontrib>Sakazume, Satoru</creatorcontrib><creatorcontrib>Ishii, Takuma</creatorcontrib><creatorcontrib>Nagai, Toshiro</creatorcontrib><creatorcontrib>Ohta, Tohru</creatorcontrib><creatorcontrib>Niikawa, Norio</creatorcontrib><creatorcontrib>Mizuno, Seiji</creatorcontrib><creatorcontrib>Kaname, Tadashi</creatorcontrib><creatorcontrib>Naritomi, Kenji</creatorcontrib><creatorcontrib>Narumi, Yoko</creatorcontrib><creatorcontrib>Wakui, Keiko</creatorcontrib><creatorcontrib>Fukushima, Yoshimitsu</creatorcontrib><creatorcontrib>Miyatake, Satoko</creatorcontrib><creatorcontrib>Mizuguchi, Takeshi</creatorcontrib><creatorcontrib>Saitsu, Hirotomo</creatorcontrib><creatorcontrib>Miyake, Noriko</creatorcontrib><creatorcontrib>Matsumoto, Naomichi</creatorcontrib><title>Clinical correlations of mutations affecting six components of the SWI/SNF complex: Detailed description of 21 patients and a review of the literature</title><title>American journal of medical genetics. Part A</title><addtitle>Am. J. Med. Genet</addtitle><description>Mutations in the components of the SWItch/sucrose nonfermentable (SWI/SNF)‐like chromatin remodeling complex have recently been reported to cause Coffin–Siris syndrome (CSS), Nicolaides–Baraitser syndrome (NCBRS), and ARID1B‐related intellectual disability (ID) syndrome. We detail here the genotype‐phenotype correlations for 85 previously published and one additional patient with mutations in the SWI/SNF complex: four with SMARCB1 mutations, seven with SMARCA4 mutations, 37 with SMARCA2 mutations, one with an SMARCE1 mutation, three with ARID1A mutations, and 33 with ARID1B mutations. The mutations were associated with syndromic ID and speech impairment (severe/profound in SMARCB1, SMARCE1, and ARID1A mutations; variable in SMARCA4, SMARCA2, and ARID1B mutations), which was frequently accompanied by agenesis or hypoplasia of the corpus callosum. SMARCB1 mutations caused “classical” CSS with typical facial “coarseness” and significant digital/nail hypoplasia. SMARCA4 mutations caused CSS without typical facial coarseness and with significant digital/nail hypoplasia. SMARCA2 mutations caused NCBRS, typically with short stature, sparse hair, a thin vermillion of the upper lip, an everted lower lip and prominent finger joints. A SMARCE1 mutation caused CSS without typical facial coarseness and with significant digital/nail hypoplasia. ARID1A mutations caused the most severe CSS with severe physical complications. ARID1B mutations caused CSS without typical facial coarseness and with mild digital/nail hypoplasia, or caused syndromic ID. Because of the common underlying mechanism and overlapping clinical features, we propose that these conditions be referred to collectively as “SWI/SNF‐related ID syndromes”. © 2013 Wiley Periodicals, Inc.</description><subject>Abnormalities, Multiple - genetics</subject><subject>ARID1A</subject><subject>ARID1B</subject><subject>Body height</subject><subject>Chromatin Assembly and Disassembly - genetics</subject><subject>Chromosomal Proteins, Non-Histone - genetics</subject><subject>Coffin-Siris syndrome</subject><subject>DNA Helicases - genetics</subject><subject>DNA-Binding Proteins - genetics</subject><subject>Face - abnormalities</subject><subject>Facies</subject><subject>Female</subject><subject>Foot Deformities, Congenital - genetics</subject><subject>Genetic Association Studies</subject><subject>Hand Deformities, Congenital - genetics</subject><subject>Humans</subject><subject>Hypotrichosis - genetics</subject><subject>intellectual disability (ID)</subject><subject>Intellectual Disability - genetics</subject><subject>Male</subject><subject>Micrognathism - genetics</subject><subject>Mutation</subject><subject>Neck - abnormalities</subject><subject>Nicolaides-Baraitser syndrome</subject><subject>Nuclear Proteins - genetics</subject><subject>SMARCA2</subject><subject>SMARCA4</subject><subject>SMARCB1</subject><subject>SMARCB1 Protein</subject><subject>SMARCE1</subject><subject>SWI/SNF complex</subject><subject>Syndrome</subject><subject>Transcription Factors - genetics</subject><issn>1552-4825</issn><issn>1552-4833</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUtv1DAURiMEoqWwY40ssWFBpn7GCbtRoEPRtCwKqsTG8jg3xUNe2A6d_hF-L868FixgZVs-35Hu_ZLkJcEzgjE91-v2bqZnTBSMPUpOiRA05Tljj493Kk6SZ96vMWZYyOxpckJZxiSm4jT5XTa2s0Y3yPTOQaOD7TuP-hq1Y9g_dF2DCba7Q95uItcOfQdd2FLhO6Cb28vzm-uL7U8Dm3foPQRtG6hQBd44O0yaCaYEDdG5zequQho5-GXh_iBqbACnw-jgefKk1o2HF_vzLPl68eFL-TFdfl5clvNlagQrWCqlyXiWi9wYCdQIzXEhGKeyokAJy_JqJammRBIsCc81qTjEyRkjIPNVRM-SNzvv4PqfI_igWusNNI3uoB-9IrygGeGYZP9HmRBcFlJM6Ou_0HU_ui4OEoVZjgmOaKTe7ijjeu8d1GpwttXuQRGspmrVVK3SalttxF_tpeOqheoIH7qMAN8B93H3D_-Uqfmnq8X84E13MesDbI4x7X6oTDIp1O31QpWSk3J59U0J9gcsxb3E</recordid><startdate>201306</startdate><enddate>201306</enddate><creator>Kosho, Tomoki</creator><creator>Okamoto, Nobuhiko</creator><creator>Ohashi, Hirofumi</creator><creator>Tsurusaki, Yoshinori</creator><creator>Imai, Yoko</creator><creator>Hibi-Ko, Yumiko</creator><creator>Kawame, Hiroshi</creator><creator>Homma, Tomomi</creator><creator>Tanabe, Saori</creator><creator>Kato, Mitsuhiro</creator><creator>Hiraki, Yoko</creator><creator>Yamagata, Takanori</creator><creator>Yano, Shoji</creator><creator>Sakazume, Satoru</creator><creator>Ishii, Takuma</creator><creator>Nagai, Toshiro</creator><creator>Ohta, Tohru</creator><creator>Niikawa, Norio</creator><creator>Mizuno, Seiji</creator><creator>Kaname, Tadashi</creator><creator>Naritomi, Kenji</creator><creator>Narumi, Yoko</creator><creator>Wakui, Keiko</creator><creator>Fukushima, Yoshimitsu</creator><creator>Miyatake, Satoko</creator><creator>Mizuguchi, Takeshi</creator><creator>Saitsu, Hirotomo</creator><creator>Miyake, Noriko</creator><creator>Matsumoto, Naomichi</creator><general>Blackwell Publishing Ltd</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>201306</creationdate><title>Clinical correlations of mutations affecting six components of the SWI/SNF complex: Detailed description of 21 patients and a review of the literature</title><author>Kosho, Tomoki ; Okamoto, Nobuhiko ; Ohashi, Hirofumi ; Tsurusaki, Yoshinori ; Imai, Yoko ; Hibi-Ko, Yumiko ; Kawame, Hiroshi ; Homma, Tomomi ; Tanabe, Saori ; Kato, Mitsuhiro ; Hiraki, Yoko ; Yamagata, Takanori ; Yano, Shoji ; Sakazume, Satoru ; Ishii, Takuma ; Nagai, Toshiro ; Ohta, Tohru ; Niikawa, Norio ; Mizuno, Seiji ; Kaname, Tadashi ; Naritomi, Kenji ; Narumi, Yoko ; Wakui, Keiko ; Fukushima, Yoshimitsu ; Miyatake, Satoko ; Mizuguchi, Takeshi ; Saitsu, Hirotomo ; Miyake, Noriko ; Matsumoto, Naomichi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5393-77c646858cc7e2c5a40953427d2e21368db72a217107148a1d4e637331e78b953</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Abnormalities, Multiple - genetics</topic><topic>ARID1A</topic><topic>ARID1B</topic><topic>Body height</topic><topic>Chromatin Assembly and Disassembly - genetics</topic><topic>Chromosomal Proteins, Non-Histone - genetics</topic><topic>Coffin-Siris syndrome</topic><topic>DNA Helicases - genetics</topic><topic>DNA-Binding Proteins - genetics</topic><topic>Face - abnormalities</topic><topic>Facies</topic><topic>Female</topic><topic>Foot Deformities, Congenital - genetics</topic><topic>Genetic Association Studies</topic><topic>Hand Deformities, Congenital - genetics</topic><topic>Humans</topic><topic>Hypotrichosis - genetics</topic><topic>intellectual disability (ID)</topic><topic>Intellectual Disability - genetics</topic><topic>Male</topic><topic>Micrognathism - genetics</topic><topic>Mutation</topic><topic>Neck - abnormalities</topic><topic>Nicolaides-Baraitser syndrome</topic><topic>Nuclear Proteins - genetics</topic><topic>SMARCA2</topic><topic>SMARCA4</topic><topic>SMARCB1</topic><topic>SMARCB1 Protein</topic><topic>SMARCE1</topic><topic>SWI/SNF complex</topic><topic>Syndrome</topic><topic>Transcription Factors - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kosho, Tomoki</creatorcontrib><creatorcontrib>Okamoto, Nobuhiko</creatorcontrib><creatorcontrib>Ohashi, Hirofumi</creatorcontrib><creatorcontrib>Tsurusaki, Yoshinori</creatorcontrib><creatorcontrib>Imai, Yoko</creatorcontrib><creatorcontrib>Hibi-Ko, Yumiko</creatorcontrib><creatorcontrib>Kawame, Hiroshi</creatorcontrib><creatorcontrib>Homma, Tomomi</creatorcontrib><creatorcontrib>Tanabe, Saori</creatorcontrib><creatorcontrib>Kato, Mitsuhiro</creatorcontrib><creatorcontrib>Hiraki, Yoko</creatorcontrib><creatorcontrib>Yamagata, Takanori</creatorcontrib><creatorcontrib>Yano, Shoji</creatorcontrib><creatorcontrib>Sakazume, Satoru</creatorcontrib><creatorcontrib>Ishii, Takuma</creatorcontrib><creatorcontrib>Nagai, Toshiro</creatorcontrib><creatorcontrib>Ohta, Tohru</creatorcontrib><creatorcontrib>Niikawa, Norio</creatorcontrib><creatorcontrib>Mizuno, Seiji</creatorcontrib><creatorcontrib>Kaname, Tadashi</creatorcontrib><creatorcontrib>Naritomi, Kenji</creatorcontrib><creatorcontrib>Narumi, Yoko</creatorcontrib><creatorcontrib>Wakui, Keiko</creatorcontrib><creatorcontrib>Fukushima, Yoshimitsu</creatorcontrib><creatorcontrib>Miyatake, Satoko</creatorcontrib><creatorcontrib>Mizuguchi, Takeshi</creatorcontrib><creatorcontrib>Saitsu, Hirotomo</creatorcontrib><creatorcontrib>Miyake, Noriko</creatorcontrib><creatorcontrib>Matsumoto, Naomichi</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>American journal of medical genetics. 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Part A</jtitle><addtitle>Am. J. Med. Genet</addtitle><date>2013-06</date><risdate>2013</risdate><volume>161A</volume><issue>6</issue><spage>1221</spage><epage>1237</epage><pages>1221-1237</pages><issn>1552-4825</issn><eissn>1552-4833</eissn><abstract>Mutations in the components of the SWItch/sucrose nonfermentable (SWI/SNF)‐like chromatin remodeling complex have recently been reported to cause Coffin–Siris syndrome (CSS), Nicolaides–Baraitser syndrome (NCBRS), and ARID1B‐related intellectual disability (ID) syndrome. We detail here the genotype‐phenotype correlations for 85 previously published and one additional patient with mutations in the SWI/SNF complex: four with SMARCB1 mutations, seven with SMARCA4 mutations, 37 with SMARCA2 mutations, one with an SMARCE1 mutation, three with ARID1A mutations, and 33 with ARID1B mutations. The mutations were associated with syndromic ID and speech impairment (severe/profound in SMARCB1, SMARCE1, and ARID1A mutations; variable in SMARCA4, SMARCA2, and ARID1B mutations), which was frequently accompanied by agenesis or hypoplasia of the corpus callosum. SMARCB1 mutations caused “classical” CSS with typical facial “coarseness” and significant digital/nail hypoplasia. SMARCA4 mutations caused CSS without typical facial coarseness and with significant digital/nail hypoplasia. SMARCA2 mutations caused NCBRS, typically with short stature, sparse hair, a thin vermillion of the upper lip, an everted lower lip and prominent finger joints. A SMARCE1 mutation caused CSS without typical facial coarseness and with significant digital/nail hypoplasia. ARID1A mutations caused the most severe CSS with severe physical complications. ARID1B mutations caused CSS without typical facial coarseness and with mild digital/nail hypoplasia, or caused syndromic ID. Because of the common underlying mechanism and overlapping clinical features, we propose that these conditions be referred to collectively as “SWI/SNF‐related ID syndromes”. © 2013 Wiley Periodicals, Inc.</abstract><cop>United States</cop><pub>Blackwell Publishing Ltd</pub><pmid>23637025</pmid><doi>10.1002/ajmg.a.35933</doi><tpages>17</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Abnormalities, Multiple - genetics ARID1A ARID1B Body height Chromatin Assembly and Disassembly - genetics Chromosomal Proteins, Non-Histone - genetics Coffin-Siris syndrome DNA Helicases - genetics DNA-Binding Proteins - genetics Face - abnormalities Facies Female Foot Deformities, Congenital - genetics Genetic Association Studies Hand Deformities, Congenital - genetics Humans Hypotrichosis - genetics intellectual disability (ID) Intellectual Disability - genetics Male Micrognathism - genetics Mutation Neck - abnormalities Nicolaides-Baraitser syndrome Nuclear Proteins - genetics SMARCA2 SMARCA4 SMARCB1 SMARCB1 Protein SMARCE1 SWI/SNF complex Syndrome Transcription Factors - genetics |
title | Clinical correlations of mutations affecting six components of the SWI/SNF complex: Detailed description of 21 patients and a review of the literature |
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