Transcriptional machinery of TNF-α-inducible YTH domain containing 2 (YTHDC2) gene
We previously demonstrated that a cellular factor, cyclosporin A (CsA) associated helicase-like protein (CAHL) that is identical to YTH domain containing 2 (YTHDC2), forms trimer complex with cyclophilin B and NS5B of hepatitis C virus (HCV) and facilitates HCV genome replication. Gene expression of...
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description | We previously demonstrated that a cellular factor, cyclosporin A (CsA) associated helicase-like protein (CAHL) that is identical to YTH domain containing 2 (YTHDC2), forms trimer complex with cyclophilin B and NS5B of hepatitis C virus (HCV) and facilitates HCV genome replication. Gene expression of YTHDC2 was shown in tumor cell lines and tumor necrosis factor (TNF)-α-treated hepatocytes, but not in untreated. However, the function of YTHDC2 in the tumor cells and the mechanism by which the YTHDC2 gene is transcribed in these cells is largely unknown. We first evaluated that the role of YTHDC2 in the proliferation of hepatocellular carcinoma (HCC) cell line Huh7 using RNA interference and found that YTHDC2-downregulated Huh7 were significantly decreased cell growth as compared to control. We next demonstrated that the cAMP response element (CRE) site in the promoter region of the YTHDC2 gene is critical for YTHDC2 transcription. To further investigate the transcription factors bound to the CRE site, we performed chromatin immunoprecipitation assays. Our findings demonstrate that c-Jun and ATF-2 bind to the CRE site in Huh7, and that TNF-α induces the biological activity of these transcription factors in hepatocytes as well as Huh7. Moreover, treatment with the HDAC inhibitor, trichostatin A (TSA), reduces YTHDC2 expression in Huh7 and in TNF-α-stimulated hepatocytes. Collectively, these data show that YTHDC2 plays an important role in tumor cells growth and activation/recruitment of c-Jun and ATF-2 to the YTHDC2 promoter is necessary for the transcription of YTHDC2, and that HDAC activity is required for the efficient expression of YTHDC2 in both of hepatocyte and HCC cells.
•The growth rate is reduced in YTHDC2-downregulated tumor cells.•YTHDC2 gene expression is regulated by transcription factor c-Jun and ATF2.•HDAC activity plays an important role for the efficient YTHDC2 gene expression. |
doi_str_mv | 10.1016/j.gene.2013.11.005 |
format | Article |
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•The growth rate is reduced in YTHDC2-downregulated tumor cells.•YTHDC2 gene expression is regulated by transcription factor c-Jun and ATF2.•HDAC activity plays an important role for the efficient YTHDC2 gene expression.</description><identifier>ISSN: 0378-1119</identifier><identifier>EISSN: 1879-0038</identifier><identifier>DOI: 10.1016/j.gene.2013.11.005</identifier><identifier>PMID: 24269672</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>ATF-2 ; Base Sequence ; c-Jun ; Carcinoma, Hepatocellular - genetics ; Carcinoma, Hepatocellular - pathology ; Cell growth ; Cell Line, Tumor ; Cell Proliferation ; CpG Islands ; DNA Methylation ; DNA Primers ; Gene Knockdown Techniques ; HDAC ; Humans ; Liver Neoplasms - genetics ; Liver Neoplasms - pathology ; Promoter Regions, Genetic ; Reverse Transcriptase Polymerase Chain Reaction ; RNA helicase ; RNA Interference ; RNA-Binding Proteins - genetics ; Transcription, Genetic ; Tumor Necrosis Factor-alpha - metabolism ; YTHDC2</subject><ispartof>Gene, 2014-02, Vol.535 (1), p.24-32</ispartof><rights>2013 Elsevier B.V.</rights><rights>Copyright © 2013 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c356t-6aec6c2240e72e924e38444bfaed4d78fd3a319d48884bf65318030ef4cc6b1f3</citedby><cites>FETCH-LOGICAL-c356t-6aec6c2240e72e924e38444bfaed4d78fd3a319d48884bf65318030ef4cc6b1f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.gene.2013.11.005$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3549,27923,27924,45994</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24269672$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tanabe, Atsushi</creatorcontrib><creatorcontrib>Konno, Junpei</creatorcontrib><creatorcontrib>Tanikawa, Kenya</creatorcontrib><creatorcontrib>Sahara, Hiroeki</creatorcontrib><title>Transcriptional machinery of TNF-α-inducible YTH domain containing 2 (YTHDC2) gene</title><title>Gene</title><addtitle>Gene</addtitle><description>We previously demonstrated that a cellular factor, cyclosporin A (CsA) associated helicase-like protein (CAHL) that is identical to YTH domain containing 2 (YTHDC2), forms trimer complex with cyclophilin B and NS5B of hepatitis C virus (HCV) and facilitates HCV genome replication. Gene expression of YTHDC2 was shown in tumor cell lines and tumor necrosis factor (TNF)-α-treated hepatocytes, but not in untreated. However, the function of YTHDC2 in the tumor cells and the mechanism by which the YTHDC2 gene is transcribed in these cells is largely unknown. We first evaluated that the role of YTHDC2 in the proliferation of hepatocellular carcinoma (HCC) cell line Huh7 using RNA interference and found that YTHDC2-downregulated Huh7 were significantly decreased cell growth as compared to control. We next demonstrated that the cAMP response element (CRE) site in the promoter region of the YTHDC2 gene is critical for YTHDC2 transcription. To further investigate the transcription factors bound to the CRE site, we performed chromatin immunoprecipitation assays. Our findings demonstrate that c-Jun and ATF-2 bind to the CRE site in Huh7, and that TNF-α induces the biological activity of these transcription factors in hepatocytes as well as Huh7. Moreover, treatment with the HDAC inhibitor, trichostatin A (TSA), reduces YTHDC2 expression in Huh7 and in TNF-α-stimulated hepatocytes. Collectively, these data show that YTHDC2 plays an important role in tumor cells growth and activation/recruitment of c-Jun and ATF-2 to the YTHDC2 promoter is necessary for the transcription of YTHDC2, and that HDAC activity is required for the efficient expression of YTHDC2 in both of hepatocyte and HCC cells.
•The growth rate is reduced in YTHDC2-downregulated tumor cells.•YTHDC2 gene expression is regulated by transcription factor c-Jun and ATF2.•HDAC activity plays an important role for the efficient YTHDC2 gene expression.</description><subject>ATF-2</subject><subject>Base Sequence</subject><subject>c-Jun</subject><subject>Carcinoma, Hepatocellular - genetics</subject><subject>Carcinoma, Hepatocellular - pathology</subject><subject>Cell growth</subject><subject>Cell Line, Tumor</subject><subject>Cell Proliferation</subject><subject>CpG Islands</subject><subject>DNA Methylation</subject><subject>DNA Primers</subject><subject>Gene Knockdown Techniques</subject><subject>HDAC</subject><subject>Humans</subject><subject>Liver Neoplasms - genetics</subject><subject>Liver Neoplasms - pathology</subject><subject>Promoter Regions, Genetic</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>RNA helicase</subject><subject>RNA Interference</subject><subject>RNA-Binding Proteins - genetics</subject><subject>Transcription, Genetic</subject><subject>Tumor Necrosis Factor-alpha - metabolism</subject><subject>YTHDC2</subject><issn>0378-1119</issn><issn>1879-0038</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9UMtuFDEQtCIQ2QR-IAfkY3KYidv2eDwSF7R5ShEcWA6cLK_dE7ya8Sz2bKR8Fj_CN-HVBo7pS0ndVaXqIuQMWA0M1OWmfsSINWcgaoCaseaILEC3XcWY0G_IgolWVwDQHZOTnDesTNPwd-SYS6461fIF-bZKNmaXwnYOU7QDHa37GSKmZzr1dPXlpvrzuwrR71xYD0h_rO6on0YbInVTnAuG-Eg5PS-HqyW_oPtE78nb3g4ZP7zgKfl-c71a3lUPX2_vl58fKicaNVfKolOOc8mw5dhxiUJLKde9RS99q3svrIDOS6112apGgGaCYS-dU2voxSk5P_hu0_Rrh3k2Y8gOh8FGnHbZgGzbRjVcqULlB6pLU84Je7NNYbTp2QAz-zLNxuyjm32ZBsCUporo44v_bj2i_y_5114hfDoQsHz5FDCZ7AJGhz4kdLPxU3jN_y_7hYSP</recordid><startdate>20140201</startdate><enddate>20140201</enddate><creator>Tanabe, Atsushi</creator><creator>Konno, Junpei</creator><creator>Tanikawa, Kenya</creator><creator>Sahara, Hiroeki</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20140201</creationdate><title>Transcriptional machinery of TNF-α-inducible YTH domain containing 2 (YTHDC2) gene</title><author>Tanabe, Atsushi ; Konno, Junpei ; Tanikawa, Kenya ; Sahara, Hiroeki</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c356t-6aec6c2240e72e924e38444bfaed4d78fd3a319d48884bf65318030ef4cc6b1f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>ATF-2</topic><topic>Base Sequence</topic><topic>c-Jun</topic><topic>Carcinoma, Hepatocellular - genetics</topic><topic>Carcinoma, Hepatocellular - pathology</topic><topic>Cell growth</topic><topic>Cell Line, Tumor</topic><topic>Cell Proliferation</topic><topic>CpG Islands</topic><topic>DNA Methylation</topic><topic>DNA Primers</topic><topic>Gene Knockdown Techniques</topic><topic>HDAC</topic><topic>Humans</topic><topic>Liver Neoplasms - genetics</topic><topic>Liver Neoplasms - pathology</topic><topic>Promoter Regions, Genetic</topic><topic>Reverse Transcriptase Polymerase Chain Reaction</topic><topic>RNA helicase</topic><topic>RNA Interference</topic><topic>RNA-Binding Proteins - genetics</topic><topic>Transcription, Genetic</topic><topic>Tumor Necrosis Factor-alpha - metabolism</topic><topic>YTHDC2</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tanabe, Atsushi</creatorcontrib><creatorcontrib>Konno, Junpei</creatorcontrib><creatorcontrib>Tanikawa, Kenya</creatorcontrib><creatorcontrib>Sahara, Hiroeki</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Gene</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tanabe, Atsushi</au><au>Konno, Junpei</au><au>Tanikawa, Kenya</au><au>Sahara, Hiroeki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Transcriptional machinery of TNF-α-inducible YTH domain containing 2 (YTHDC2) gene</atitle><jtitle>Gene</jtitle><addtitle>Gene</addtitle><date>2014-02-01</date><risdate>2014</risdate><volume>535</volume><issue>1</issue><spage>24</spage><epage>32</epage><pages>24-32</pages><issn>0378-1119</issn><eissn>1879-0038</eissn><abstract>We previously demonstrated that a cellular factor, cyclosporin A (CsA) associated helicase-like protein (CAHL) that is identical to YTH domain containing 2 (YTHDC2), forms trimer complex with cyclophilin B and NS5B of hepatitis C virus (HCV) and facilitates HCV genome replication. Gene expression of YTHDC2 was shown in tumor cell lines and tumor necrosis factor (TNF)-α-treated hepatocytes, but not in untreated. However, the function of YTHDC2 in the tumor cells and the mechanism by which the YTHDC2 gene is transcribed in these cells is largely unknown. We first evaluated that the role of YTHDC2 in the proliferation of hepatocellular carcinoma (HCC) cell line Huh7 using RNA interference and found that YTHDC2-downregulated Huh7 were significantly decreased cell growth as compared to control. We next demonstrated that the cAMP response element (CRE) site in the promoter region of the YTHDC2 gene is critical for YTHDC2 transcription. To further investigate the transcription factors bound to the CRE site, we performed chromatin immunoprecipitation assays. Our findings demonstrate that c-Jun and ATF-2 bind to the CRE site in Huh7, and that TNF-α induces the biological activity of these transcription factors in hepatocytes as well as Huh7. Moreover, treatment with the HDAC inhibitor, trichostatin A (TSA), reduces YTHDC2 expression in Huh7 and in TNF-α-stimulated hepatocytes. Collectively, these data show that YTHDC2 plays an important role in tumor cells growth and activation/recruitment of c-Jun and ATF-2 to the YTHDC2 promoter is necessary for the transcription of YTHDC2, and that HDAC activity is required for the efficient expression of YTHDC2 in both of hepatocyte and HCC cells.
•The growth rate is reduced in YTHDC2-downregulated tumor cells.•YTHDC2 gene expression is regulated by transcription factor c-Jun and ATF2.•HDAC activity plays an important role for the efficient YTHDC2 gene expression.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>24269672</pmid><doi>10.1016/j.gene.2013.11.005</doi><tpages>9</tpages></addata></record> |
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subjects | ATF-2 Base Sequence c-Jun Carcinoma, Hepatocellular - genetics Carcinoma, Hepatocellular - pathology Cell growth Cell Line, Tumor Cell Proliferation CpG Islands DNA Methylation DNA Primers Gene Knockdown Techniques HDAC Humans Liver Neoplasms - genetics Liver Neoplasms - pathology Promoter Regions, Genetic Reverse Transcriptase Polymerase Chain Reaction RNA helicase RNA Interference RNA-Binding Proteins - genetics Transcription, Genetic Tumor Necrosis Factor-alpha - metabolism YTHDC2 |
title | Transcriptional machinery of TNF-α-inducible YTH domain containing 2 (YTHDC2) gene |
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