Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences
Purpose: Accurate segmentation and volume estimation of the prostate gland in magnetic resonance (MR) and computed tomography (CT) images are necessary steps in diagnosis, treatment, and monitoring of prostate cancer. This paper presents an algorithm for the prostate gland volume estimation based on...
Gespeichert in:
Veröffentlicht in: | Medical physics (Lancaster) 2013-12, Vol.40 (12), p.123503-n/a |
---|---|
Hauptverfasser: | , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | n/a |
---|---|
container_issue | 12 |
container_start_page | 123503 |
container_title | Medical physics (Lancaster) |
container_volume | 40 |
creator | Khalvati, Farzad Salmanpour, Aryan Rahnamayan, Shahryar Rodrigues, George Tizhoosh, Hamid R. |
description | Purpose:
Accurate segmentation and volume estimation of the prostate gland in magnetic resonance (MR) and computed tomography (CT) images are necessary steps in diagnosis, treatment, and monitoring of prostate cancer. This paper presents an algorithm for the prostate gland volume estimation based on the semiautomated segmentation of individual slices in T2-weighted MR and CT image sequences.
Methods:
The proposedInter-Slice Bidirectional Registration-based Segmentation (iBRS) algorithm relies on interslice image registration of volume data to segment the prostate gland without the use of an anatomical atlas. It requires the user to mark only three slices in a given volume dataset, i.e., the first, middle, and last slices. Next, the proposed algorithm uses a registration algorithm to autosegment the remaining slices. We conducted comprehensive experiments to measure the performance of the proposed algorithm using three registration methods (i.e., rigid, affine, and nonrigid techniques).
Results:
The results with the proposed technique were compared with manual marking using prostate MR and CT images from 117 patients. Manual marking was performed by an expert user for all 117 patients. The median accuracies for individual slices measured using the Dice similarity coefficient (DSC) were 92% and 91% for MR and CT images, respectively. The iBRS algorithm was also evaluated regarding user variability, which confirmed that the algorithm was robust to interuser variability when marking the prostate gland.
Conclusions:
The proposed algorithm exploits the interslice data redundancy of the images in a volume dataset of MR and CT images and eliminates the need for an atlas, minimizing the computational cost while producing highly accurate results which are robust to interuser variability. |
doi_str_mv | 10.1118/1.4829511 |
format | Article |
fullrecord | <record><control><sourceid>proquest_scita</sourceid><recordid>TN_cdi_proquest_miscellaneous_1467067890</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1467067890</sourcerecordid><originalsourceid>FETCH-LOGICAL-c4211-87bd168edd2fb578077d03dec01084b51d8c27304da385c4655967e82eab99ec3</originalsourceid><addsrcrecordid>eNp9kUtP3DAURi3UCobHgj-ALHUDlQLXr9hZViNeEqgIwdpK7JvBVSaZ2pki_n09ZFp1Q1e2r44_33NNyDGDc8aYuWDn0vBKMbZDZlxqUUgO1ScyA6hkwSWoPbKf0g8AKIWCXbLHpeCgpJiR7rYfMRapCw5pE3yI6MYw9HVHIy5CGmO9ORZNndDThIsl9uN7iQ4tHV-QruKQcgXpoqt7T0NP7x_pZjd_omFZLzDf-rnG3mE6JJ_bukt4tF0PyPPV5dP8prj7fn07_3ZXOMkZK4xuPCsNes_bRmkDWnsQHh0wMLJRzBvHtQDpa2GUk6VSVanRcKybqkInDsiXKTd3FmxyYUT34oa-z26Wc66Y1CpTpxOVDXKDabTLkBx2WQOHdbJMlhpKbSrI6NmEuiybIrZ2FbNbfLMM7OYLLLPbL8jsyTZ23SzR_yX_zDwDxQS8hg7fPk6y9w_bwK8TvxF5H_1_X_8Q_jXEf8JXvhW_AVeHqc0</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1467067890</pqid></control><display><type>article</type><title>Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences</title><source>MEDLINE</source><source>Wiley Online Library Journals Frontfile Complete</source><source>Alma/SFX Local Collection</source><creator>Khalvati, Farzad ; Salmanpour, Aryan ; Rahnamayan, Shahryar ; Rodrigues, George ; Tizhoosh, Hamid R.</creator><creatorcontrib>Khalvati, Farzad ; Salmanpour, Aryan ; Rahnamayan, Shahryar ; Rodrigues, George ; Tizhoosh, Hamid R.</creatorcontrib><description>Purpose:
Accurate segmentation and volume estimation of the prostate gland in magnetic resonance (MR) and computed tomography (CT) images are necessary steps in diagnosis, treatment, and monitoring of prostate cancer. This paper presents an algorithm for the prostate gland volume estimation based on the semiautomated segmentation of individual slices in T2-weighted MR and CT image sequences.
Methods:
The proposedInter-Slice Bidirectional Registration-based Segmentation (iBRS) algorithm relies on interslice image registration of volume data to segment the prostate gland without the use of an anatomical atlas. It requires the user to mark only three slices in a given volume dataset, i.e., the first, middle, and last slices. Next, the proposed algorithm uses a registration algorithm to autosegment the remaining slices. We conducted comprehensive experiments to measure the performance of the proposed algorithm using three registration methods (i.e., rigid, affine, and nonrigid techniques).
Results:
The results with the proposed technique were compared with manual marking using prostate MR and CT images from 117 patients. Manual marking was performed by an expert user for all 117 patients. The median accuracies for individual slices measured using the Dice similarity coefficient (DSC) were 92% and 91% for MR and CT images, respectively. The iBRS algorithm was also evaluated regarding user variability, which confirmed that the algorithm was robust to interuser variability when marking the prostate gland.
Conclusions:
The proposed algorithm exploits the interslice data redundancy of the images in a volume dataset of MR and CT images and eliminates the need for an atlas, minimizing the computational cost while producing highly accurate results which are robust to interuser variability.</description><identifier>ISSN: 0094-2405</identifier><identifier>EISSN: 2473-4209</identifier><identifier>DOI: 10.1118/1.4829511</identifier><identifier>PMID: 24320543</identifier><identifier>CODEN: MPHYA6</identifier><language>eng</language><publisher>United States: American Association of Physicists in Medicine</publisher><subject>ACCURACY ; ALGORITHMS ; Biological material, e.g. blood, urine; Haemocytometers ; biological organs ; biomedical MRI ; CALORIMETRY ; Cancer ; Clinical applications ; Computed tomography ; computed tomography imaging ; Computerised tomographs ; computerised tomography ; COMPUTERIZED TOMOGRAPHY ; DATASETS ; DIAGNOSIS ; Digital computing or data processing equipment or methods, specially adapted for specific applications ; Humans ; Image data processing or generation, in general ; IMAGE PROCESSING ; Image Processing, Computer-Assisted - methods ; image registration ; image segmentation ; image sequences ; Interpolation ; Involving electronic [emr] or nuclear [nmr] magnetic resonance, e.g. magnetic resonance imaging ; magnetic resonance imaging ; Magnetic Resonance Imaging - methods ; Male ; medical image processing ; Medical image segmentation ; Medical imaging ; Medical magnetic resonance imaging ; NEOPLASMS ; Organ Size ; PATIENTS ; PROSTATE ; Prostate - diagnostic imaging ; Prostate - pathology ; prostate segmentation ; prostate volume ; Prostatic Neoplasms - diagnostic imaging ; Prostatic Neoplasms - pathology ; RADIOLOGY AND NUCLEAR MEDICINE ; Registration ; Segmentation ; Surface reconstruction ; Tomography, X-Ray Computed - methods ; Ultrasonography</subject><ispartof>Medical physics (Lancaster), 2013-12, Vol.40 (12), p.123503-n/a</ispartof><rights>American Association of Physicists in Medicine</rights><rights>2013 American Association of Physicists in Medicine</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4211-87bd168edd2fb578077d03dec01084b51d8c27304da385c4655967e82eab99ec3</citedby><cites>FETCH-LOGICAL-c4211-87bd168edd2fb578077d03dec01084b51d8c27304da385c4655967e82eab99ec3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1118%2F1.4829511$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1118%2F1.4829511$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>230,314,780,784,885,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24320543$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/22251475$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Khalvati, Farzad</creatorcontrib><creatorcontrib>Salmanpour, Aryan</creatorcontrib><creatorcontrib>Rahnamayan, Shahryar</creatorcontrib><creatorcontrib>Rodrigues, George</creatorcontrib><creatorcontrib>Tizhoosh, Hamid R.</creatorcontrib><title>Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences</title><title>Medical physics (Lancaster)</title><addtitle>Med Phys</addtitle><description>Purpose:
Accurate segmentation and volume estimation of the prostate gland in magnetic resonance (MR) and computed tomography (CT) images are necessary steps in diagnosis, treatment, and monitoring of prostate cancer. This paper presents an algorithm for the prostate gland volume estimation based on the semiautomated segmentation of individual slices in T2-weighted MR and CT image sequences.
Methods:
The proposedInter-Slice Bidirectional Registration-based Segmentation (iBRS) algorithm relies on interslice image registration of volume data to segment the prostate gland without the use of an anatomical atlas. It requires the user to mark only three slices in a given volume dataset, i.e., the first, middle, and last slices. Next, the proposed algorithm uses a registration algorithm to autosegment the remaining slices. We conducted comprehensive experiments to measure the performance of the proposed algorithm using three registration methods (i.e., rigid, affine, and nonrigid techniques).
Results:
The results with the proposed technique were compared with manual marking using prostate MR and CT images from 117 patients. Manual marking was performed by an expert user for all 117 patients. The median accuracies for individual slices measured using the Dice similarity coefficient (DSC) were 92% and 91% for MR and CT images, respectively. The iBRS algorithm was also evaluated regarding user variability, which confirmed that the algorithm was robust to interuser variability when marking the prostate gland.
Conclusions:
The proposed algorithm exploits the interslice data redundancy of the images in a volume dataset of MR and CT images and eliminates the need for an atlas, minimizing the computational cost while producing highly accurate results which are robust to interuser variability.</description><subject>ACCURACY</subject><subject>ALGORITHMS</subject><subject>Biological material, e.g. blood, urine; Haemocytometers</subject><subject>biological organs</subject><subject>biomedical MRI</subject><subject>CALORIMETRY</subject><subject>Cancer</subject><subject>Clinical applications</subject><subject>Computed tomography</subject><subject>computed tomography imaging</subject><subject>Computerised tomographs</subject><subject>computerised tomography</subject><subject>COMPUTERIZED TOMOGRAPHY</subject><subject>DATASETS</subject><subject>DIAGNOSIS</subject><subject>Digital computing or data processing equipment or methods, specially adapted for specific applications</subject><subject>Humans</subject><subject>Image data processing or generation, in general</subject><subject>IMAGE PROCESSING</subject><subject>Image Processing, Computer-Assisted - methods</subject><subject>image registration</subject><subject>image segmentation</subject><subject>image sequences</subject><subject>Interpolation</subject><subject>Involving electronic [emr] or nuclear [nmr] magnetic resonance, e.g. magnetic resonance imaging</subject><subject>magnetic resonance imaging</subject><subject>Magnetic Resonance Imaging - methods</subject><subject>Male</subject><subject>medical image processing</subject><subject>Medical image segmentation</subject><subject>Medical imaging</subject><subject>Medical magnetic resonance imaging</subject><subject>NEOPLASMS</subject><subject>Organ Size</subject><subject>PATIENTS</subject><subject>PROSTATE</subject><subject>Prostate - diagnostic imaging</subject><subject>Prostate - pathology</subject><subject>prostate segmentation</subject><subject>prostate volume</subject><subject>Prostatic Neoplasms - diagnostic imaging</subject><subject>Prostatic Neoplasms - pathology</subject><subject>RADIOLOGY AND NUCLEAR MEDICINE</subject><subject>Registration</subject><subject>Segmentation</subject><subject>Surface reconstruction</subject><subject>Tomography, X-Ray Computed - methods</subject><subject>Ultrasonography</subject><issn>0094-2405</issn><issn>2473-4209</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kUtP3DAURi3UCobHgj-ALHUDlQLXr9hZViNeEqgIwdpK7JvBVSaZ2pki_n09ZFp1Q1e2r44_33NNyDGDc8aYuWDn0vBKMbZDZlxqUUgO1ScyA6hkwSWoPbKf0g8AKIWCXbLHpeCgpJiR7rYfMRapCw5pE3yI6MYw9HVHIy5CGmO9ORZNndDThIsl9uN7iQ4tHV-QruKQcgXpoqt7T0NP7x_pZjd_omFZLzDf-rnG3mE6JJ_bukt4tF0PyPPV5dP8prj7fn07_3ZXOMkZK4xuPCsNes_bRmkDWnsQHh0wMLJRzBvHtQDpa2GUk6VSVanRcKybqkInDsiXKTd3FmxyYUT34oa-z26Wc66Y1CpTpxOVDXKDabTLkBx2WQOHdbJMlhpKbSrI6NmEuiybIrZ2FbNbfLMM7OYLLLPbL8jsyTZ23SzR_yX_zDwDxQS8hg7fPk6y9w_bwK8TvxF5H_1_X_8Q_jXEf8JXvhW_AVeHqc0</recordid><startdate>201312</startdate><enddate>201312</enddate><creator>Khalvati, Farzad</creator><creator>Salmanpour, Aryan</creator><creator>Rahnamayan, Shahryar</creator><creator>Rodrigues, George</creator><creator>Tizhoosh, Hamid R.</creator><general>American Association of Physicists in Medicine</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>OTOTI</scope></search><sort><creationdate>201312</creationdate><title>Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences</title><author>Khalvati, Farzad ; Salmanpour, Aryan ; Rahnamayan, Shahryar ; Rodrigues, George ; Tizhoosh, Hamid R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4211-87bd168edd2fb578077d03dec01084b51d8c27304da385c4655967e82eab99ec3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>ACCURACY</topic><topic>ALGORITHMS</topic><topic>Biological material, e.g. blood, urine; Haemocytometers</topic><topic>biological organs</topic><topic>biomedical MRI</topic><topic>CALORIMETRY</topic><topic>Cancer</topic><topic>Clinical applications</topic><topic>Computed tomography</topic><topic>computed tomography imaging</topic><topic>Computerised tomographs</topic><topic>computerised tomography</topic><topic>COMPUTERIZED TOMOGRAPHY</topic><topic>DATASETS</topic><topic>DIAGNOSIS</topic><topic>Digital computing or data processing equipment or methods, specially adapted for specific applications</topic><topic>Humans</topic><topic>Image data processing or generation, in general</topic><topic>IMAGE PROCESSING</topic><topic>Image Processing, Computer-Assisted - methods</topic><topic>image registration</topic><topic>image segmentation</topic><topic>image sequences</topic><topic>Interpolation</topic><topic>Involving electronic [emr] or nuclear [nmr] magnetic resonance, e.g. magnetic resonance imaging</topic><topic>magnetic resonance imaging</topic><topic>Magnetic Resonance Imaging - methods</topic><topic>Male</topic><topic>medical image processing</topic><topic>Medical image segmentation</topic><topic>Medical imaging</topic><topic>Medical magnetic resonance imaging</topic><topic>NEOPLASMS</topic><topic>Organ Size</topic><topic>PATIENTS</topic><topic>PROSTATE</topic><topic>Prostate - diagnostic imaging</topic><topic>Prostate - pathology</topic><topic>prostate segmentation</topic><topic>prostate volume</topic><topic>Prostatic Neoplasms - diagnostic imaging</topic><topic>Prostatic Neoplasms - pathology</topic><topic>RADIOLOGY AND NUCLEAR MEDICINE</topic><topic>Registration</topic><topic>Segmentation</topic><topic>Surface reconstruction</topic><topic>Tomography, X-Ray Computed - methods</topic><topic>Ultrasonography</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Khalvati, Farzad</creatorcontrib><creatorcontrib>Salmanpour, Aryan</creatorcontrib><creatorcontrib>Rahnamayan, Shahryar</creatorcontrib><creatorcontrib>Rodrigues, George</creatorcontrib><creatorcontrib>Tizhoosh, Hamid R.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><jtitle>Medical physics (Lancaster)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Khalvati, Farzad</au><au>Salmanpour, Aryan</au><au>Rahnamayan, Shahryar</au><au>Rodrigues, George</au><au>Tizhoosh, Hamid R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences</atitle><jtitle>Medical physics (Lancaster)</jtitle><addtitle>Med Phys</addtitle><date>2013-12</date><risdate>2013</risdate><volume>40</volume><issue>12</issue><spage>123503</spage><epage>n/a</epage><pages>123503-n/a</pages><issn>0094-2405</issn><eissn>2473-4209</eissn><coden>MPHYA6</coden><abstract>Purpose:
Accurate segmentation and volume estimation of the prostate gland in magnetic resonance (MR) and computed tomography (CT) images are necessary steps in diagnosis, treatment, and monitoring of prostate cancer. This paper presents an algorithm for the prostate gland volume estimation based on the semiautomated segmentation of individual slices in T2-weighted MR and CT image sequences.
Methods:
The proposedInter-Slice Bidirectional Registration-based Segmentation (iBRS) algorithm relies on interslice image registration of volume data to segment the prostate gland without the use of an anatomical atlas. It requires the user to mark only three slices in a given volume dataset, i.e., the first, middle, and last slices. Next, the proposed algorithm uses a registration algorithm to autosegment the remaining slices. We conducted comprehensive experiments to measure the performance of the proposed algorithm using three registration methods (i.e., rigid, affine, and nonrigid techniques).
Results:
The results with the proposed technique were compared with manual marking using prostate MR and CT images from 117 patients. Manual marking was performed by an expert user for all 117 patients. The median accuracies for individual slices measured using the Dice similarity coefficient (DSC) were 92% and 91% for MR and CT images, respectively. The iBRS algorithm was also evaluated regarding user variability, which confirmed that the algorithm was robust to interuser variability when marking the prostate gland.
Conclusions:
The proposed algorithm exploits the interslice data redundancy of the images in a volume dataset of MR and CT images and eliminates the need for an atlas, minimizing the computational cost while producing highly accurate results which are robust to interuser variability.</abstract><cop>United States</cop><pub>American Association of Physicists in Medicine</pub><pmid>24320543</pmid><doi>10.1118/1.4829511</doi><tpages>11</tpages></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0094-2405 |
ispartof | Medical physics (Lancaster), 2013-12, Vol.40 (12), p.123503-n/a |
issn | 0094-2405 2473-4209 |
language | eng |
recordid | cdi_proquest_miscellaneous_1467067890 |
source | MEDLINE; Wiley Online Library Journals Frontfile Complete; Alma/SFX Local Collection |
subjects | ACCURACY ALGORITHMS Biological material, e.g. blood, urine Haemocytometers biological organs biomedical MRI CALORIMETRY Cancer Clinical applications Computed tomography computed tomography imaging Computerised tomographs computerised tomography COMPUTERIZED TOMOGRAPHY DATASETS DIAGNOSIS Digital computing or data processing equipment or methods, specially adapted for specific applications Humans Image data processing or generation, in general IMAGE PROCESSING Image Processing, Computer-Assisted - methods image registration image segmentation image sequences Interpolation Involving electronic [emr] or nuclear [nmr] magnetic resonance, e.g. magnetic resonance imaging magnetic resonance imaging Magnetic Resonance Imaging - methods Male medical image processing Medical image segmentation Medical imaging Medical magnetic resonance imaging NEOPLASMS Organ Size PATIENTS PROSTATE Prostate - diagnostic imaging Prostate - pathology prostate segmentation prostate volume Prostatic Neoplasms - diagnostic imaging Prostatic Neoplasms - pathology RADIOLOGY AND NUCLEAR MEDICINE Registration Segmentation Surface reconstruction Tomography, X-Ray Computed - methods Ultrasonography |
title | Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-06T08%3A20%3A00IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_scita&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Inter-slice%20bidirectional%20registration-based%20segmentation%20of%20the%20prostate%20gland%20in%20MR%20and%20CT%20image%20sequences&rft.jtitle=Medical%20physics%20(Lancaster)&rft.au=Khalvati,%20Farzad&rft.date=2013-12&rft.volume=40&rft.issue=12&rft.spage=123503&rft.epage=n/a&rft.pages=123503-n/a&rft.issn=0094-2405&rft.eissn=2473-4209&rft.coden=MPHYA6&rft_id=info:doi/10.1118/1.4829511&rft_dat=%3Cproquest_scita%3E1467067890%3C/proquest_scita%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1467067890&rft_id=info:pmid/24320543&rfr_iscdi=true |