Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences

Purpose: Accurate segmentation and volume estimation of the prostate gland in magnetic resonance (MR) and computed tomography (CT) images are necessary steps in diagnosis, treatment, and monitoring of prostate cancer. This paper presents an algorithm for the prostate gland volume estimation based on...

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Veröffentlicht in:Medical physics (Lancaster) 2013-12, Vol.40 (12), p.123503-n/a
Hauptverfasser: Khalvati, Farzad, Salmanpour, Aryan, Rahnamayan, Shahryar, Rodrigues, George, Tizhoosh, Hamid R.
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container_issue 12
container_start_page 123503
container_title Medical physics (Lancaster)
container_volume 40
creator Khalvati, Farzad
Salmanpour, Aryan
Rahnamayan, Shahryar
Rodrigues, George
Tizhoosh, Hamid R.
description Purpose: Accurate segmentation and volume estimation of the prostate gland in magnetic resonance (MR) and computed tomography (CT) images are necessary steps in diagnosis, treatment, and monitoring of prostate cancer. This paper presents an algorithm for the prostate gland volume estimation based on the semiautomated segmentation of individual slices in T2-weighted MR and CT image sequences. Methods: The proposedInter-Slice Bidirectional Registration-based Segmentation (iBRS) algorithm relies on interslice image registration of volume data to segment the prostate gland without the use of an anatomical atlas. It requires the user to mark only three slices in a given volume dataset, i.e., the first, middle, and last slices. Next, the proposed algorithm uses a registration algorithm to autosegment the remaining slices. We conducted comprehensive experiments to measure the performance of the proposed algorithm using three registration methods (i.e., rigid, affine, and nonrigid techniques). Results: The results with the proposed technique were compared with manual marking using prostate MR and CT images from 117 patients. Manual marking was performed by an expert user for all 117 patients. The median accuracies for individual slices measured using the Dice similarity coefficient (DSC) were 92% and 91% for MR and CT images, respectively. The iBRS algorithm was also evaluated regarding user variability, which confirmed that the algorithm was robust to interuser variability when marking the prostate gland. Conclusions: The proposed algorithm exploits the interslice data redundancy of the images in a volume dataset of MR and CT images and eliminates the need for an atlas, minimizing the computational cost while producing highly accurate results which are robust to interuser variability.
doi_str_mv 10.1118/1.4829511
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This paper presents an algorithm for the prostate gland volume estimation based on the semiautomated segmentation of individual slices in T2-weighted MR and CT image sequences. Methods: The proposedInter-Slice Bidirectional Registration-based Segmentation (iBRS) algorithm relies on interslice image registration of volume data to segment the prostate gland without the use of an anatomical atlas. It requires the user to mark only three slices in a given volume dataset, i.e., the first, middle, and last slices. Next, the proposed algorithm uses a registration algorithm to autosegment the remaining slices. We conducted comprehensive experiments to measure the performance of the proposed algorithm using three registration methods (i.e., rigid, affine, and nonrigid techniques). Results: The results with the proposed technique were compared with manual marking using prostate MR and CT images from 117 patients. Manual marking was performed by an expert user for all 117 patients. The median accuracies for individual slices measured using the Dice similarity coefficient (DSC) were 92% and 91% for MR and CT images, respectively. The iBRS algorithm was also evaluated regarding user variability, which confirmed that the algorithm was robust to interuser variability when marking the prostate gland. 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This paper presents an algorithm for the prostate gland volume estimation based on the semiautomated segmentation of individual slices in T2-weighted MR and CT image sequences. Methods: The proposedInter-Slice Bidirectional Registration-based Segmentation (iBRS) algorithm relies on interslice image registration of volume data to segment the prostate gland without the use of an anatomical atlas. It requires the user to mark only three slices in a given volume dataset, i.e., the first, middle, and last slices. Next, the proposed algorithm uses a registration algorithm to autosegment the remaining slices. We conducted comprehensive experiments to measure the performance of the proposed algorithm using three registration methods (i.e., rigid, affine, and nonrigid techniques). Results: The results with the proposed technique were compared with manual marking using prostate MR and CT images from 117 patients. Manual marking was performed by an expert user for all 117 patients. The median accuracies for individual slices measured using the Dice similarity coefficient (DSC) were 92% and 91% for MR and CT images, respectively. The iBRS algorithm was also evaluated regarding user variability, which confirmed that the algorithm was robust to interuser variability when marking the prostate gland. 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Salmanpour, Aryan ; Rahnamayan, Shahryar ; Rodrigues, George ; Tizhoosh, Hamid R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4211-87bd168edd2fb578077d03dec01084b51d8c27304da385c4655967e82eab99ec3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>ACCURACY</topic><topic>ALGORITHMS</topic><topic>Biological material, e.g. blood, urine; Haemocytometers</topic><topic>biological organs</topic><topic>biomedical MRI</topic><topic>CALORIMETRY</topic><topic>Cancer</topic><topic>Clinical applications</topic><topic>Computed tomography</topic><topic>computed tomography imaging</topic><topic>Computerised tomographs</topic><topic>computerised tomography</topic><topic>COMPUTERIZED TOMOGRAPHY</topic><topic>DATASETS</topic><topic>DIAGNOSIS</topic><topic>Digital computing or data processing equipment or methods, specially adapted for specific applications</topic><topic>Humans</topic><topic>Image data processing or generation, in general</topic><topic>IMAGE PROCESSING</topic><topic>Image Processing, Computer-Assisted - methods</topic><topic>image registration</topic><topic>image segmentation</topic><topic>image sequences</topic><topic>Interpolation</topic><topic>Involving electronic [emr] or nuclear [nmr] magnetic resonance, e.g. magnetic resonance imaging</topic><topic>magnetic resonance imaging</topic><topic>Magnetic Resonance Imaging - methods</topic><topic>Male</topic><topic>medical image processing</topic><topic>Medical image segmentation</topic><topic>Medical imaging</topic><topic>Medical magnetic resonance imaging</topic><topic>NEOPLASMS</topic><topic>Organ Size</topic><topic>PATIENTS</topic><topic>PROSTATE</topic><topic>Prostate - diagnostic imaging</topic><topic>Prostate - pathology</topic><topic>prostate segmentation</topic><topic>prostate volume</topic><topic>Prostatic Neoplasms - diagnostic imaging</topic><topic>Prostatic Neoplasms - pathology</topic><topic>RADIOLOGY AND NUCLEAR MEDICINE</topic><topic>Registration</topic><topic>Segmentation</topic><topic>Surface reconstruction</topic><topic>Tomography, X-Ray Computed - methods</topic><topic>Ultrasonography</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Khalvati, Farzad</creatorcontrib><creatorcontrib>Salmanpour, Aryan</creatorcontrib><creatorcontrib>Rahnamayan, Shahryar</creatorcontrib><creatorcontrib>Rodrigues, George</creatorcontrib><creatorcontrib>Tizhoosh, Hamid R.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><jtitle>Medical physics (Lancaster)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Khalvati, Farzad</au><au>Salmanpour, Aryan</au><au>Rahnamayan, Shahryar</au><au>Rodrigues, George</au><au>Tizhoosh, Hamid R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences</atitle><jtitle>Medical physics (Lancaster)</jtitle><addtitle>Med Phys</addtitle><date>2013-12</date><risdate>2013</risdate><volume>40</volume><issue>12</issue><spage>123503</spage><epage>n/a</epage><pages>123503-n/a</pages><issn>0094-2405</issn><eissn>2473-4209</eissn><coden>MPHYA6</coden><abstract>Purpose: Accurate segmentation and volume estimation of the prostate gland in magnetic resonance (MR) and computed tomography (CT) images are necessary steps in diagnosis, treatment, and monitoring of prostate cancer. This paper presents an algorithm for the prostate gland volume estimation based on the semiautomated segmentation of individual slices in T2-weighted MR and CT image sequences. Methods: The proposedInter-Slice Bidirectional Registration-based Segmentation (iBRS) algorithm relies on interslice image registration of volume data to segment the prostate gland without the use of an anatomical atlas. It requires the user to mark only three slices in a given volume dataset, i.e., the first, middle, and last slices. Next, the proposed algorithm uses a registration algorithm to autosegment the remaining slices. We conducted comprehensive experiments to measure the performance of the proposed algorithm using three registration methods (i.e., rigid, affine, and nonrigid techniques). Results: The results with the proposed technique were compared with manual marking using prostate MR and CT images from 117 patients. Manual marking was performed by an expert user for all 117 patients. The median accuracies for individual slices measured using the Dice similarity coefficient (DSC) were 92% and 91% for MR and CT images, respectively. The iBRS algorithm was also evaluated regarding user variability, which confirmed that the algorithm was robust to interuser variability when marking the prostate gland. Conclusions: The proposed algorithm exploits the interslice data redundancy of the images in a volume dataset of MR and CT images and eliminates the need for an atlas, minimizing the computational cost while producing highly accurate results which are robust to interuser variability.</abstract><cop>United States</cop><pub>American Association of Physicists in Medicine</pub><pmid>24320543</pmid><doi>10.1118/1.4829511</doi><tpages>11</tpages></addata></record>
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subjects ACCURACY
ALGORITHMS
Biological material, e.g. blood, urine
Haemocytometers
biological organs
biomedical MRI
CALORIMETRY
Cancer
Clinical applications
Computed tomography
computed tomography imaging
Computerised tomographs
computerised tomography
COMPUTERIZED TOMOGRAPHY
DATASETS
DIAGNOSIS
Digital computing or data processing equipment or methods, specially adapted for specific applications
Humans
Image data processing or generation, in general
IMAGE PROCESSING
Image Processing, Computer-Assisted - methods
image registration
image segmentation
image sequences
Interpolation
Involving electronic [emr] or nuclear [nmr] magnetic resonance, e.g. magnetic resonance imaging
magnetic resonance imaging
Magnetic Resonance Imaging - methods
Male
medical image processing
Medical image segmentation
Medical imaging
Medical magnetic resonance imaging
NEOPLASMS
Organ Size
PATIENTS
PROSTATE
Prostate - diagnostic imaging
Prostate - pathology
prostate segmentation
prostate volume
Prostatic Neoplasms - diagnostic imaging
Prostatic Neoplasms - pathology
RADIOLOGY AND NUCLEAR MEDICINE
Registration
Segmentation
Surface reconstruction
Tomography, X-Ray Computed - methods
Ultrasonography
title Inter-slice bidirectional registration-based segmentation of the prostate gland in MR and CT image sequences
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